Potentials of termite mound soil bacteria in ecosystem engineering for sustainable agriculture

The environmental deteriorating effects arising from the misuse of pesticides and chemical fertilizers in agriculture has resulted in the pursuit of eco-friendly means of producing agricultural produce without compromising the safety of the environment. Thus, the purpose of this review is to assess the potential of bacteria in termite mound soil to serve as biofertilizer and biocontrol as a promising tool for sustainable agriculture. This review has been divided into four main sections: termite and termite mound soils, bacterial composition in termite mound soil, the role of bacteria in termite mound soil as biofertilizers, and the role of bacteria in termite mound soil as biocontrol. Some bacteria in termite mound soils have been isolated and characterized by various means, and these bacteria could improve the fertility of the soil and suppress soil borne plant pathogens through the production of antibiotics, nutrient fixation, and other means. These bacteria in termite mound soils could serve as a remarkable means of reducing the reliance on the usage of chemical fertilizers and pesticides in farming, thereby increasing crop yield.     

Accumulation of local pathogens: a new hypothesis to explain exotic plant invasions

Recent studies have concluded that release from native soil pathogens may explain invasion of exotic plant species. However, release from soil enemies does not explain all plant invasions. The invasion of Ammophila arenaria (marram grass or European beach grass) in California provides an illustrative example for which the enemy release hypothesis has been refuted. To explore the possible role of plant–soil community interactions in this invasion, we developed a mathematical model. First, we analyzed the role of plant–soil community interactions in the succession of A. arenaria in its native range (north-western Europe). Then, we used our model to explore for California how alternative plant–soil community interactions may generate the same effect as if A. arenaria were released from soil enemies. This analysis was carried out by construction of a 'recovery plane' that discriminates between plant competition and plant–soil community interactions. Our model shows that in California, the accumulation of local pathogens by A. arenaria could result in exclusion of native plant species. Moreover, this mechanism could trigger the rate and spatial pattern of invasive spread generally observed in nature. We propose that our 'accumulation of local pathogens' hypothesis could serve as an alternative explanation for the enemy release hypothesis to be considered in further experimental studies on invasive plant species.     

Fungi as a toolbox for sustainable bioremediation of pesticides in soil and water

Pesticides can help reduce yield losses caused by pests, pathogens, and weeds, but their overuse causes serious environmental pollution. They are persistent in the environment and are biomagnified through the food chain, becoming a serious health hazard for humankind. Bioremediation, where microbes are used to degrade pesticides in situ, is a useful technology. This review summarizes data on the fungi involved in the biodegradation of chemical pesticides and their application in soil and water bioremediation. Indications for future studies in this field are given.     

Distinct soil microbial diversity under long-term organic and conventional farming

Low-input agricultural systems aim at reducing the use of synthetic fertilizers and pesticides in order to improve sustainable production and ecosystem health. Despite the integral role of the soil microbiome in agricultural production, we still have a limited understanding of the complex response of microbial diversity to organic and conventional farming. Here we report on the structural response of the soil microbiome to more than two decades of different agricultural management in a long-term field experiment using a high-throughput pyrosequencing approach of bacterial and fungal ribosomal markers. Organic farming increased richness, decreased evenness, reduced dispersion and shifted the structure of the soil microbiota when compared with conventionally managed soils under exclusively mineral fertilization. This effect was largely attributed to the use and quality of organic fertilizers, as differences became smaller when conventionally managed soils under an integrated fertilization scheme were examined. The impact of the plant protection regime, characterized by moderate and targeted application of pesticides, was of subordinate importance. Systems not receiving manure harboured a dispersed and functionally versatile community characterized by presumably oligotrophic organisms adapted to nutrient-limited environments. Systems receiving organic fertilizer were characterized by specific microbial guilds known to be involved in degradation of complex organic compounds such as manure and compost. The throughput and resolution of the sequencing approach permitted to detect specific structural shifts at the level of individual microbial taxa that harbours a novel potential for managing the soil environment by means of promoting beneficial and suppressing detrimental organisms.     

土壤生物与土壤污染研究前沿与展望

随着社会经济发展,人类生产活动对自然环境产生越来越广泛深刻的影响,土壤污染已成为危及生态系统稳定、农产品质量安全和人体健康的突出环境问题之一。重金属、有机污染化合物、病原菌及抗性基因等各类污染物大量进入土壤后,对土壤生物系统造成毒害作用,影响到土壤生态功能;另一方面,土壤生物如细菌、真菌、土壤动物等在一定程度上能够适应土壤污染,深刻影响着污染物在土壤中的迁移转化过程,在土壤污染修复中具有潜在重要作用。从土壤污染的生态毒理效应、土壤生物对土壤污染的响应与适应机制、污染土壤修复原理与技术等三方面综述了土壤生物与土壤污染相关研究前沿,展望了重点研究方向。     

Strategies and agronomic interventions to improve the phosphorus-use efficiency of farming systems

Phosphorus (P)-deficiency is a significant challenge for agricultural productivity on many highly P-sorbing weathered and tropical soils throughout the world. On these soils it can be necessary to apply up to five-fold more P as fertiliser than is exported in products. Given the finite nature of global P resources, it is important that such inefficiencies be addressed. For low P-sorbing soils, P-efficient farming systems will also assist attempts to reduce pollution associated with P losses to the environment. P-balance inefficiency of farms is associated with loss of P in erosion, runoff or leaching, uneven dispersal of animal excreta, and accumulation of P as sparingly-available phosphate and organic P in the soil. In many cases it is possible to minimise P losses in runoff or erosion. Uneven dispersal of P in excreta typically amounts to ~5% of P-fertiliser inputs. However, the rate of P accumulation in moderate to highly P-sorbing soils is a major contributor to inefficient P-fertiliser use. We discuss the causal edaphic, plant and microbial factors in the context of soil P management, P cycling and productivity goals of farms. Management interventions that can alter P-use efficiency are explored, including better targeted P-fertiliser use, organic amendments, removing other constraints to yield, zone management, use of plants with low critical-P requirements, and modified farming systems. Higher productivity in low-P soils, or lower P inputs in fertilised agricultural systems can be achieved by various interventions, but it is also critically important to understand the agroecology of plant P nutrition within farming systems for improvements in P-use efficiency to be realised.     

Genome editing for resistance against plant pests and pathogens

The conventional breeding of crops struggles to keep up with increasing food needs and ever-adapting pests and pathogens. Global climate changes have imposed another layer of complexity to biological systems, increasing the challenge to obtain improved crop cultivars. These dictate the development and application of novel technologies, like genome editing (GE), that assist targeted and fast breeding programs in crops, with enhanced resistance to pests and pathogens. GE does not require crossings, hence avoiding the introduction of undesirable traits through linkage in elite varieties, speeding up the whole breeding process. Additionally, GE technologies can improve plant protection by directly targeting plant susceptibility (S) genes or virulence factors of pests and pathogens, either through the direct edition of the pest genome or by adding the GE machinery to the plant genome or to microorganisms functioning as biocontrol agents (BCAs). Over the years, GE technology has been continuously evolving and more so with the development of CRISPR/Cas. Here we review the latest advancements of GE to improve plant protection, focusing on CRISPR/Cas-based genome edition of crops and pests and pathogens. We discuss how other technologies, such as host-induced gene silencing (HIGS) and the use of BCAs could benefit from CRISPR/Cas to accelerate the development of green strategies to promote a sustainable agriculture in the future.

     

Bacillus subtilis: A plant-growth promoting rhizobacterium that also impacts biotic stress

Plants encounter many biotic agents, such as viruses, bacteria, nematodes, weeds, and arachnids. These entities induce biotic stress in their hosts by disrupting normal metabolism, and as a result, limit plant growth and/or are the cause of plant mortality. Some biotic agents, however, interact symbiotically or synergistically with their host plants. Some microbes can be beneficial to plants and perform the same role as chemical fertilizers and pesticides, acting as a biofertilizer and/or biopesticide. Plant growth promoting rhizobacteria (PGPR) can significantly enhance plant growth and represent a mutually helpful plant-microbe interaction. Bacillus species are a major type of rhizobacteria that can form spores that can survive in the soil for long period of time under harsh environmental conditions. Plant growth is enhanced by PGPR through the induction of systemic resistance, antibiosis, and competitive omission. Thus, the application of microbes can be used to induce systemic resistance in plants against biotic agents and enhance environmental stress tolerance. Bacillus subtilis exhibits both a direct and indirect biocontrol mechanism to suppress disease caused by pathogens. The direct mechanism includes the synthesis of many secondary metabolites, hormones, cell-wall-degrading enzymes, and antioxidants that assist the plant in its defense against pathogen attack. The indirect mechanism includes the stimulation of plant growth and the induction of acquired systemic resistance. Bacillus subtilis can also solubilize soil P, enhance nitrogen fixation, and produce siderophores that promote its growth and suppresses the growth of pathogens. Bacillus subtilis enhances stress tolerance in their plant hosts by inducing the expression of stress-response genes, phytohormones, and stress-related metabolites. The present review discusses the activity of B. subtilis in the rhizosphere, its role as a root colonizer, its biocontrol potential, the associated mechanisms of biocontrol and the ability of B. subtilis to increase crop productivity under conditions of biotic and abiotic stress.     

Plants as Environmental Biosensors

Plants are continuously exposed to a wide variety of perturbations including variation of temperature and/or light, mechanical forces, gravity, air and soil pollution, drought, deficiency or surplus of nutrients, attacks by insects and pathogens, etc., and hence, it is essential for all plants to have survival sensory mechanisms against such perturbations. Consequently, plants generate various types of intracellular and intercellular electrical signals mostly in the form of action and variation potentials in response to these environmental changes. However, over a long period, only certain plants with rapid and highly noticeable responses for environmental stresses have received much attention from plant scientists. Of particular interest to our recent studies on ultra fast action potential measurements in green plants, we discuss in this review the evidence supporting the foundation for utilizing green plants as fast biosensors for molecular recognition of the direction of light, monitoring the environment, and detecting the insect attacks as well as the effects of pesticides, defoliants, uncouplers, and heavy metal pollutants.Key Words: plant signaling, plant electrophysiology, action potential, biosensor     

Symbiotic microorganisms, a key for ecological success and protection of plants

Plant-associated microbial diversity encompasses symbionts, protecting their host against various aggressions. Mycorrhizal and rhizospheric microorganisms buffer effects of soil toxic compounds and soil-borne pathogens. Endophytic bacteria and fungi, some of which are vertically inherited through seeds, take part in plant protection by acting directly on aggressive factors (mainly pathogens and herbivores) or by enhancing plant responses. Plant protective microbial symbionts determine the ecological success of plants; they drastically modify plant communities and related trophic webs. This review suggests approaches to improve the inventory of diversity and functions of in situ plant-associated microorganisms.     

Harnessing microbial volatiles to replace pesticides and fertilizers

Global agricultural systems are under increasing pressure to deliver sufficient, healthy food for a growing population. Seasonal inputs, including synthetic pesticides and fertilizers, are applied to crops to reduce losses by pathogens, and enhance crop biomass, although their production and application can also incur several economic and environmental penalties. New solutions are therefore urgently required to enhance crop yield whilst reducing dependence on these seasonal inputs. Volatile Organic Compounds (VOCs) produced by soil microorganisms may provide alternative, sustainable solutions, due to their ability to inhibit plant pathogens, induce plant resistance against pathogens and enhance plant growth promotion. This review will highlight recent advances in our understanding of the biological activities of microbial VOCs (mVOCs), providing perspectives on research required to develop them into viable alternatives to current unsustainable seasonal inputs. This can identify potential new avenues for mVOC research and stimulate discussion across the academic community and agri-business sector.     

Control of Western flower thrips (Frankliniella occidentalis Pergande) pupae in compost

Western flower thrips (Frankliniella occidentalis) develops from an active larval stage through to a non-feeding, almost immobile, pre-pupal and pupal stage. This generally occurs in the compost or soil below the plant on which the larvae fed. Control of thrips at this stage in their development offers a chance of utilising pathogens or pesticides not suitable for use in an integrated control programme aimed at adult and larval stages. Trials were done with F. occidentalis pupae and pre-pupae in a soil/peat based compost using 11 pesticides, three fungal pathogens and four species of insect parasitic nematodes. The pesticides malathion and chlorpyrifos-methyl gave the most promising result with 97.5% and 96.5% control, respectively. The fungal pathogen Metarhizium anisopliae proved better when applied as a pre-pupation rather than as a post-pupation treatment (74.5% : 26.6% control). The insect parasitic nematode Steinernema carpocapsae gave 76.6% control when applied at 25 times 10⁴ nematodes litre^-1 of compost. The results are discussed in relation to control of thrips in glasshouses.     

Effectiveness of low-temperature biochar in controlling the release and leaching of herbicides in soil

Aims

Biochars, being good sorbents of organic compounds, can reduce the mobility of pesticides in soil and subsequent pollution to groundwater, but may also impact on the efficacy of soil-applied herbicides. The aim of this study is to seek a potential solution to this problem.

Methods

We prepared a wood biochar at a relatively low heat treatment temperature (350 °C), and used it as an adsorptive carrier for incorporating the herbicides 2,4-D and acetochlor, and also as a soil amendment. Release experiment through a thin soil layer and leaching experiment through a soil column were used to evaluate the effectiveness of the biochar for controlling the release and leaching of herbicides in soil.

Results

The release experiments demonstrated that the low-temperature biochar could control the release of herbicides in soil, and the leaching experiments showed that this biochar significantly reduced the leached amount of herbicides by 1/2?~?3/4, depending on the depth (5?~?15 cm) of biochar-amended topsoil. High retention of herbicides in the biochar-amended topsoil was observed.

Conclusions

The results suggest that the low temperature biochar, if applied properly in soil, may be useful for extending the efficacy of herbicides while controlling their potential pollution.     

Fungicide-loaded and biodegradable xylan-based nanocarriers

The delivery of agrochemicals is typically achieved by the spraying of fossil-based polymer dispersions, which might accumulate in the soil and increase microplastic pollution. A potentially sustainable alternative is the use of biodegradable nano- or micro-formulations based on biopolymers, which can be degraded selectively by fungal enzymes to release encapsulated agrochemicals. To date, no hemicellulose nanocarriers for drug delivery in plants have been reported. Xylan is a renewable and abundant feedstock occurring naturally in high amounts in hemicellulose - a major component of the plant cell wall. Herein, xylan from corncobs was used to produce the first fungicide-loaded xylan-based nanocarriers by interfacial polyaddition in an inverse miniemulsion using toluene diisocyanate (TDI) as a crosslinking agent. The nanocarriers were redispersed in water and the aqueous dispersions were proven to be active in vitro against several pathogenic fungi, which are responsible for fungal plant diseases in horticulture or agriculture. Besides, empty xylan-based nanocarriers stimulated the growth of fungal mycelium, which indicated the degradation of xylan in the presence of the fungi, and underlined the degradation as a trigger to release a loaded agrochemical. This first example of crosslinked xylan-based nanocarriers expands the library of biodegradable and biobased nanocarriers for agrochemical release and might play a crucial role for future formulations in plant protection.     

养殖排放农药和抗生素在红树林区中残留的初步研究

广西北海大冠沙红树林区是养殖废水的排放地,该文报道2008年10月农药和抗生素在该林区红树林滩、沙滩和潮沟三类生境的残留水、沉积物和底栖动物中的分布与含量。通过对103种农药和22种抗生素检测,发现该林区有16种农药,4种抗生素,其中甲氰菊酯、仲丁威和醚菌酯是主要的污染农药。在残留水中检出12种农药,它们在红树林滩、沙滩和潮沟中的总浓度分别是42.70、29.63和27.41ng/L。在沉积物中检出10种农药,它们在红树林滩、沙滩和潮沟中的总浓度分别是7.90、6.70和7.29μg/kg.DW。在底栖动物体内检出4种农药和3种抗生素。分析表明,红树林滩(残留水和沉积物)比底栖动物更易受到养殖废水的污染,底栖动物对抗生素的富集能力似乎高于对农药的富集能力,生境间污染相似度高于样品间的污染相似度。     

夏枯草药材和种植土壤中农药及重金属残留分析

采用气相色谱及ICP-AES法测定了安徽庐江和江苏洪泽2个种植基地的土壤和夏枯草(Prunella vulgaris L.)果穗及全草中有机氯农药及重金属含量,并根据污染指数和相关标准对土壤及药材的安全性进行了评价.测定结果表明:来源于2个基地的土壤及药材中有机氯农药及重金属含量有明显差异.庐江产果穗和全草中Pb、Cd、Cu、Cr、As及BHC含量分别为3.361和3.953、0.172和0.190、8.258和7.722、3.423和2.658、0.284和0.355、0.003和0.004 mg·kg-1,Hg和DDT未检出;洪泽产果穗和全草中Pb、Cd、Cu、Cr、Hg及BHC含量分别为2.399和1.558、0.155和0.111、7.682和6.756、4.259和3.801、0.077和0.102、0.003和0.006 mg·kg-1,As未检出,果穗中也未检出DDT.庐江基地土壤中Cd、Cu、Cr、As、Hg、BHC和DDT含量分别为0.001、12.943、47.417、1.008、0.003、0.003和0.002 mg·kg-1,Pb未检出;洪泽基地土壤中Pb、Cd、Cu、Cr、As、Hg和BHC含量分别为3.443、0.002、18.655、63.385、3.701、0.141和0.004 mg·kg-1,DDT未检出.比较结果表明:夏枯草果穗中重金属残留量均高于全草,但均低于国家限量标准;土壤中有机氯农药及重金属单项污染指数均小于1,且庐江和洪泽基地土壤的综合污染指数分别为0.286和0.399,因此,土壤污染等级属安全级且污染水平为清洁级.     

Structure and ecological function of the soil microbiome affecting plant–soil feedbacks in the presence of a soil-borne pathogen

Interactions between plants and soil microbes are important for plant growth and resistance. Through plant–soil-feedbacks, growth of a plant is influenced by the previous plant that was growing in the same soil. We performed a plant–soil feedback study with 37 grass, forb and legume species, to condition the soil and then tested the effects of plant-induced changes in soil microbiomes on the growth of the commercially important cut-flower Chrysanthemum in presence and absence of a pathogen. We analysed the fungal and bacterial communities in these soils using next-generation sequencing and examined their relationship with plant growth in inoculated soils with or without the root pathogen, Pythium ultimum. We show that a large part of the soil microbiome is plant species-specific while a smaller part is conserved at the plant family level. We further identified clusters of plant species creating plant growth promoting microbiomes that suppress concomitantly plant pathogens. Especially soil inocula with higher relative abundances of arbuscular mycorrhizal fungi caused positive effects on the Chrysanthemum growth when exposed to the pathogen. We conclude that plants differ greatly in how they influence the soil microbiome and that plant growth and protection against pathogens is associated with a complex soil microbial community.     

Ecological and environmental footprint of 50 years of agricultural expansion in Argentina

Agriculture expanded during the last 50 years from the Pampas to NW Argentina at the expense of natural forests and rangelands. In parallel, productivity was boosted through the increasing application of external inputs, modern technology and management practices. This study evaluated the impact of agricultural expansion between 1960 and 2005 by assessing the implications of land use, technology and management changes on (i) carbon (C), nitrogen (N) and phosphorous (P) stocks in soil and biomass, (ii) energy, C, N, P and water fluxes and (iii) water pollution, soil erosion, habitat intervention and greenhouse gas (GHG) emissions (impacts). Based on different data sources, these issues were assessed over～1.5 million km² (63% of Argentina), involving 399 political districts during three representative periods: 1956–1960, 1986–1990 and 2001–2005. The ecological and environmental performance of 1197 farming system types was evaluated through the AgroEcoIndex model, which quantified the stocks, fluxes and impacts mentioned above. Cultivation of natural ecosystems and farming intensification caused a noticeable increase of productivity, a strengthening of energy flux, an opening of matter cycles (C, N, P) and a negative impact on habitats and GHGs emission. However, due to the improved tillage practices and the application of less aggressive pesticides, erosion and pollution risk are today lower than those of the mid‐20th century. The consistency of some assumptions and results were checked through uncertainty analysis. Comparing our results with international figures, some impacts (e.g. soil erosion, nutrient balance, energy use) were less significant than those recorded in intensive‐farming countries like China, Japan, New Zealand, USA, or those of Western Europe, showing that farmers in Argentina developed the capacity to produce under relatively low‐input/low‐impact schemes during the last decades. [Correction added after online publication 4 October 2010: In the first sentence of the Abstract, NE was corrected to NW.]     

Exploiting the full potential of disease-resistance genes for agricultural use

Effective and sustained control of fungal pathogens and nematodes is an important issue for all agricultural systems. Global losses caused by pathogens are estimated to be 12% of the potential crop production [1], despite the continued release of new resistant cultivars and pesticides. Furthermore, fungi are continually becoming resistant to existing resistance genes and fungicides, and a few of the pesticides are being withdrawn from the market for environmental reasons. In addition to reducing crop yield, fungal diseases often lower crop quality by producing toxins that affect humans and human health. Additional methods of disease control are therefore highly desirable. Breeding programs based on plant disease-resistance genes are being optimized by incorporating molecular marker techniques and biotechnology. These efforts can be expected to result in the first launches of new disease-resistant crops within the next five years.     

浅谈害虫成虫防治技术

目前害虫防治中的一系列问题如害虫幼虫抗药性上升、害虫天敌被大量杀伤、人畜中毒、环境污染与土壤农药残毒日趋严重 ,使以成虫为目标虫态或防治对象而开展的成虫防治策略被广为接受并广泛应用。本文对目前使用的各种成虫防治技术体系进行了概括 ,并列举了成虫防治技术的特点和优点 ,以及进行成虫防治的许多实例。其中信息化合物防治和遗传防治的飞速发展为成虫防治的应用提供了多种途径。