THE DISTRIBUTION OF SELECTED DIAGNOSTIC CHARACTERS IN THE LECANORALES

Traditional classification concepts in lichenology are often, but not always, supported by molecular results. Molecular data should be compared and correlated with micro-morphological and ultrastructural information before systematic rearrangements are undertaken. Visualization of the distribution of morphological and other characters in specified groups is considered as a desirable resultper se, but it is also important to discover whether correlating characters are dependent on each other or not; and if not, whether their distribution in a group might support existing classification concepts. A data set for lecanoralean and other lichenized and lichenicolous genera, comprising 90—mostly multi-state—characters was used to store morphological, chemical and ecological data, and to test character correlations. Several examples of such analyses are presented. The following pairs of characters show some degree of dependence: ascospore septation and number per ascus, ascospore wall type and pigmentation, ascospore and epihymenium pigmentation. Several authors postulated that ascus types are good phylogenetic markers. Ascus types have been widely used for classification concepts of the Lecanorales. Two-dimensional correlation queries of ascus types with the following morphologcal characters were made: substratum preference, thallus growth form and ascospore septation. These correlations supply characteristic profiles for the various ascus types, which have to be compared with forthcoming phylogenetic hypotheses based on molecular data.     

The effects of fertilization on the trait-abundance relationships in a Tibetan alpine meadow community

Aims Comparisons of the trait–abundance relationships from various habitat types are critical for community ecology, which can offer us insights about the mechanisms underlying the local community assembly, such as the relative role of neutral vs. niche processes in shaping community structure. Here, we explored the responses of trait–abundance relationships to nitrogen (N), phosphorus (P) and potassium (K) fertilization in an alpine meadow.Methods Five fertilization treatments (an unfertilized control and additions of N, P, K and NPK respectively) were implemented using randomized block design in an alpine Tibetan meadow. Species relative abundance (SRA), plant above-ground biomass and species richness were measured in each plot. For 24 common species, we measured species functional traits: saturated height, specific leaf area (SLA) and leaf dry matter content (LDMC) in each treatment but seed size only in the unfertilized control. Standard major axis (SMA) regression and phylogenetically independent contrasts (PICs) analysis were used to analyse species trait–abundance relationships in response to different fertilization treatments.Important findings Positive correlations between SRA and saturated height were raised following N, P and NPK fertilizations, which indicated an increase in light competition in these plots. In P fertilized plots, SRA was also positively correlated with LDMC because tall grasses with a nutrients conservation strategy often have a relative competitive advantage in capturing limited light and soil nutrients. In K fertilized plots, neither the trait–abundance relationships nor above-ground biomass or species richness significantly differed from that in the control, which suggests that K was not a limiting resource in our study site. These significant correlations between species traits and relative abundance in fertilized treatment suggest that trait-based selection plays an important role in determining species abundance within local communities in alpine meadows.     

Waterbird use of artificial wetlands in an Australian urban landscape

With the loss of natural wetlands, artificial wetlands are becoming increasingly important as habitat for waterbirds. We investigated the relationships between waterbirds and various biophysical parameters on artificial wetlands in an Australian urban valley. The densities (birds per hectare) of several species were correlated (mostly positively) with wetland area, and correlations were observed between certain species and other physical and water chemistry variables. Waterbird community structure, based on both abundance (birds per wetland) and density data, was most consistently positively correlated with the relative amount of wetland perimeter that was vegetated, surface area, distance to nearest wetland, public accessibility and shoreline irregularity. We also compared the relative use of the two types of urban wetlands, namely urban lakes and stormwater treatment wetlands, and found for both abundance and density that the number of individuals and species did not vary significantly between wetland types but that significant differences were observed for particular species and feeding guilds, with no species or guild being more abundant or found in greater density on an urban lake than a stormwater treatment wetland. Designing wetlands to provide a diversity of habitat will benefit most species.     

Relating mesocarnivore relative abundance to anthropogenic land‐use with a hierarchical spatial count model

There is growing need to develop models of spatial patterns in animal abundance, yet comparatively few examples of such models exist. This is especially true in situations where the abundance of one species may inhibit that of another, such as the intensively‐farmed landscape of the Prairie Pothole Region (PPR) of the central United States, where waterfowl production is largely constrained by mesocarnivore nest predation. We used a hierarchical Bayesian approach to relate the distribution of various land‐cover types to the relative abundances of four mesocarnivores in the PPR: coyote Canis latrans, raccoon Procyon lotor, red fox Vulpes vulpes, and striped skunk Mephitis mephitis. We developed models for each species at multiple spatial resolutions (41.4 km², 10.4 km², and 2.6 km²) to address different ecological and management‐related questions. Model results for each species were similar irrespective of resolution. We found that the amount of row‐crop agriculture was nearly ubiquitous in our best models, exhibiting a positive relationship with relative abundance for each species. The amount of native grassland land‐cover was positively associated with coyote and raccoon relative abundance, but generally absent from models for red fox and skunk. Red fox and skunk were positively associated with each other, suggesting potential niche overlap. We found no evidence that coyote abundance limited that of other mesocarnivore species, as might be expected under a hypothesis of mesopredator release. The relationships between relative abundance and land‐cover types were similar across spatial resolutions. Our results indicated that mesocarnivores in the PPR are most likely to occur in portions of the landscape with large amounts of agricultural land‐cover. Further, our results indicated that track‐survey data can be used in a hierarchical framework to gain inferences regarding spatial patterns in animal relative abundance.     

General theory of competitive coexistence in spatially-varying environments

A general model of competitive and apparent competitive interactions in a spatially-variable environment is developed and analyzed to extend findings on coexistence in a temporally-variable environment to the spatial case and to elucidate new principles. In particular, coexistence mechanisms are divided into variation-dependent and variation-independent mechanisms with variation-dependent mechanisms including spatial generalizations of relative nonlinearity and the storage effect. Although directly analogous to the corresponding temporal mechanisms, these spatial mechanisms involve different life history traits which suggest that the spatial storage effect should arise more commonly than the temporal storage effect and spatial relative nonlinearity should arise less commonly than temporal relative nonlinearity. Additional mechanisms occur in the spatial case due to spatial covariance between the finite rate of increase of a local population and its local abundance, which has no clear temporal analogue. A limited analysis of these additional mechanisms shows that they have similar properties to the storage effect and relative nonlinearity and potentially may be considered as enlargements of the earlier mechanisms. The rate of increase of a species perturbed to low density is used to quantify coexistence. A general quadratic approximation, which is exact in some important cases, divides this rate of increase into contributions from the various mechanisms above and admits no other mechanisms, suggesting that opportunities for coexistence in a spatially-variable environment are fully characterized by these mechanisms within this general model. Three spatially-implicit models are analyzed as illustrations of the general findings and of techniques using small variance approximations. The contributions to coexistence of the various mechanisms are expressed in terms of simple interpretable formulae. These spatially-implicit models include a model of an annual plant community, a spatial multispecies version of the lottery model, and a multispecies model of an insect community competing for spatially-patchy and ephemeral food.     

Recombination Rate and AT-content Show Opposite Correlations in Mammalian and Other Animal Genomes

Genomes are often characterized by their genome size, recombination rate and nucleotide content. Negative correlations of recombination rate and AT-content have been reported for selected species. Here we investigate 26 completely sequenced animal genomes with respect to their genomic characteristics. After correcting for phylogenetic correlations we find significant correlations between these characters, showing that these do not evolve independently. The genomes of mammals differ when compared to other animal genomes. Correlations between AT-content and recombination rate are negative, but only for mammals. All other animals show a positive correlation for these characters. These results show that studies on the relationship between genome characteristics using single species might lead to the right conclusion, but cannot be applied as a general rule to all taxonomic groups. Electronic supplementary material  The online version of this article (doi:) contains supplementary material, which is available to authorized users.     

QUANTITATIVE GENETICS,DEVELOPMENT, AND PHYSIOLOGICAL ADAPTATION IN HOST STRAINS OF FALL ARMYWORM

Two genetically differentiated host strains of fall armyworm were reared on their own and each other's host plants, rice and corn, to determine whether they were physiologically adapted to their natural hosts and whether they exhibited genetically based differences in development. Larval host had a greater impact on development in the rice strain than in the corn strain, indicating that physiology could have facilitated specialization in one strain but not the other. Consequently, behavioral mechanisms are also likely to be important in the maintenance of host specificity. Comparisons between strains indicated significant differences in one trait, the rate at which larvae gained weight. Because this character had consistently high heritabilities, genetic differentiation in development is indicated. An analysis of genotype-by-environment interactions within each strain detected significant interactions for three of five traits, suggesting that genotypic performance on one host was not indicative of performance on the other. Each strain thus exhibited genetic variation that would facilitate host-associated divergence and adaptation if coupled with a mechanism that reduced gene flow between hosts. Finally, significant genetic correlations between several characters were detected when strains were reared on their natural hosts but not when they were reared on nonnatural hosts. Apparently, feeding on novel hosts caused developmental uncoupling of characters. Release from genetic constraints could provide a mechanism for physiological adjustments to newly occupied habitats.     

海南岛霸王岭热带天然林景观中木本植物功能型分布的影响因素

为了探讨在热带天然林景观中不同因素对木本植物(限于乔木和灌木)功能型分布的影响,在对海南岛霸王岭的热带天然林进行样方调查的基础上,运用数量分类方法对热带天然林的木本植物进行了功能型划分,并运用冗余度分析(Redundancy analysis, RDA)分别探讨了功能型出现与否、功能型物种丰富度和功能型木本植物多度3个矩阵与环境、空间和干扰因素之间的关系。运用偏冗余度分析对影响功能型分布变化的环境、干扰、空间及其交互作用等因素进行了定量分解。结果表明:利用木材密度和潜在最大高度两个指标划分出的9个功能型,能较好的区分功能型间对生境的适应响应差异;因子分解表明,纯环境、纯人为干扰和混合的环境-人为干扰是影响3个功能型矩阵分布变化的主要因素,纯空间和与空间位置相耦合的因素相对较低;在诸多因子中,干扰类型、地形因子、土壤类型、砂砾含量、土层厚度以及经纬度坐标是影响功能型分布变化的主导因子;RDA排序分析表明,一般来讲,硬木功能型多在生境条件好和远离人为干扰的立地高发生。软木功能型则更多地出现于生境条件恶劣和人为干扰频繁的立地。而中等硬度功能型则生态幅度较宽。但除了软木灌木功能型外,其它功能型物种丰富度和木本植物多度多在土层深厚和生境条件较好的立地较高。     

The consequences of using different measures of mean abundance to characterize the abundance–occupancy relationship

Aim To investigate the influence of choice of the measure of mean abundance on the abundance–occupancy relationship, and to examine the implications for identifying causal mechanisms. Innovation Simulations were performed to generate stochastic abundance–occupancy data sets covering a wide range of scenarios representative of empirical abundance–occupancy data. Two common measures of mean abundance were used: local mean abundance (mean abundance calculated using only data from occupied sites) and global mean abundance (mean abundance calculated using all sites or samples). I found that the choice of mean abundance measure had a strong effect on the correlation between abundance and occupancy. Local mean abundance was associated with a high proportion of negative correlations (mean percentage of negative correlations across 24 simulations = 44.39), while global mean abundance was strongly associated with positive correlations (mean percentage of negative correlations across 24 simulations = 0.02). Main conclusions The choice of abundance measure influences the correlation between abundance and occupancy. Negative correlations between local mean abundance and occupancy are an inherent and unavoidable consequence of using this measure of abundance. Efforts to identify causal mechanisms that give rise to the abundance–occupancy relationship have attempted to explain occasional negative correlations when the expectation was for positive correlations. This study shows that negative correlations arise from the choice of mean abundance measure and that this artefact confounds efforts to identify ecological causal mechanisms.     

Non-neutral patterns of species abundance in grassland communities

Although the distribution of plant species abundance in a Minnesota grassland was consistent with neutral theory, niche but not neutral mechanisms were supported by the ability of species traits to predict species abundances in three experimental grassland communities. In particular, data from 27 species grown in monoculture showed that species differed in a trait, R *, which is the level to which each species reduced the concentration of soil nitrate, the limiting soil nutrient and which is predicted to be inversely associated with competitive ability for nitrogen (N). In these N-limited habitats, species abundance ranks correlated with their predicted competitive ranks: low R * species, on average dominated. These correlations were significantly different than expected for neutral theory, which assumes the exchangeability of species traits. Additionally, we found that changes in relative abundance after environmental change (N-addition or disturbance) were not neutral but also were significantly associated with R *.     

Impact of insect pollinator group and floral display size on outcrossing rate

Despite the strong influence of pollination ecology on the evolution of selfing, we have little information on how distinct groups of insect pollinators influence outcrossing rate. However, differences in behavior between pollinator groups could easily influence how each group affects outcrossing rate. We examined the influence of distinct insect pollinator groups on outcrossing rate in the rocky mountain columbine, Aquilegia coerulea. The impact of population size, plant density, size of floral display, and herkogamy (spatial separation between anthers and stigmas) on outcrossing rate was also considered as these variables were previously found to affect outcrossing rate in some plant species. We quantified correlations between all independent variables and used simple and two-factor regressions to determine direct and indirect impact of each independent variable on outcrossing rate. Outcrossing rate increased significantly with hawkmoth abundance but not with the abundance of any of the other groups of floral visitors, which included bumblebees, solitary bees, syrphid flies, and muscidae. Outcrossing rate was also significantly affected by floral display size and together, hawkmoth abundance and floral display size explained 87% of the variation in outcrossing rate. None of the other independent variables directly affected the outcrossing rate. This is the first report of a significant impact of pollinator type on outcrossing rate. Hawkmoths did not visit fewer flowers per plant relative to other pollinator groups but preferred visiting female-phase flowers first on a plant. Both the behavior of pollinators and floral display size affected outcrossing rate via their impact on the level of geitonogamous (among flower) selfing. Given that geitonogamous selfing is never advantageous, the variation in outcrossing rate and maintenance of mixed mating systems in populations of A. coerulea may not require an adaptive explanation.     

Relationship between species relative abundance and plant traits for an infertile habitat

This study tested whether differences in species abundance at an infertile site could be explained by differences in the species' plant traits. Nine traits were chosen for the analysis based on results of previous studies conducted across soil fertility gradients. The traits were measured for each of seven herbaceous species whose abundance ranged from 5% to 100% of locations occupied in a ridgetop habitat. Using linear regression, significant relationships were found between species relative abundance and each of five traits. In these relationships, a trait explained between 69% and 88% of interspecific variation in abundance. Relatively abundant species had a slower growth rate, smaller shoot mass, higher root to shoot ratio, slower loss of leaf tissue to herbivores and higher infection of roots by mycorrhizal fungi than less abundant species. Using three of these five traits (i.e. shoot mass, mycorrhizal infection and loss of leaf tissue to herbivores) as independent variables in a multiple regression equation explained 99% of interspecific variation in abundance. The latter result indicates that species relative abundance can be explained for a single habitat by choosing traits found to be related to species abundance in previous gradient studies. However, not every trait chosen was significantly related to species abundance. Therefore, a large number of traits may have to be chosen initially to ensure that some subset of these traits can explain species relative abundance.     

THE USEFULNESS OF BEHAVIOR FOR PHYLOGENY ESTIMATION: LEVELS OF HOMOPLASY IN BEHAVIORAL AND MORPHOLOGICAL CHARACTERS

It is widely believed that behavior is more evolutionarily labile and/or more difficult to characterize than morphology, and thus that behavioral characters are not as useful as morphological characters for estimating phylogenetic relationships. To examine the relative utility of behavior and morphology for estimating phylogeny, we compared levels of homoplasy for morphological and behavioral characters that have been used in systematic studies. In an analysis of 22 data sets that contained both morphological and behavioral characters we found no significant difference between mean consistency indices (CIs, which measure homoplasy) within data sets for the two types of characters. In a second analysis we compared overall CIs for 8 data sets comprised entirely of behavioral characters with overall CIs for 32 morphological data sets and found no significant difference between the two types of data sets. For both analyses, 95% confidence limits on the difference between the two types of characters indicate that, even if given the benefit of the doubt, morphological characters could not have substantially higher mean CIs than behavioral characters. These results do not support the idea that behavioral characters are less useful than morphological characters for the estimation of phylogeny.     

Range-size,local abundance and germination niche-breadth in Mediterranean plants of two life-forms

The relationships between rarity (i.e., range-size, local abundance) and niche-breadth can be important to assess the risks the species face under global change, namely those resulting from fire regime change. In fire areas, germination is critical for establishing after fire for many species. We examined the relationships between rarity and germination niche-breadth for 53 plant species of two life-forms (chamaephytes and hemicryptophytes) growing in Eastern Spain. Rarity was measured as geographic range-size and as local abundance. Local abundance was evaluated at two sites differing in their post-fire successional status (a recently burned area and a long-unburned one). Germination niche-breadth was measured as the mean germination evenness index from four germination experiments that subjected the seeds to various germinating conditions characteristics of fire environments. Correlations between rarity (range-size, local abundance) and niche-breadth were calculated in cross-species mode or by way of phylogenetically independent contrasts, and either for the 53 species (all-species set) or for each of two life-form groups (chamaephytes, hemicryptophytes). In general, no significant correlations were found between the rarity measures and germination niche-breadth for the all-species set. However, significant correlations emerged when the analyses were done separating species by life-forms. Germination niche-breadth was positively correlated with range-size for chamaephytes, and negatively for hemicryptophytes. In addition, germination niche-breadth was uncorrelated, or negatively so, with local abundance for chamaephytes and hemicryptophytes, respectively. While no correlation between range-size and local abundance was found for chamaephytes, a negative one was obtained for hemicryptophytes. We conclude that rarity/germination-niche relationships varied by life-form. This pattern of relationships was obscured when all species were joined in a single group. Based on the contrasting patterns of correlations obtained for each life-form we argue that the changes in the germinating environment caused by alterations in fire regime are likely to differentially affect these two groups of species.     

PHYLOGENETIC ANALYSIS OF THE EVOLUTIONARY CORRELATION USING LIKELIHOOD

Many evolutionary processes can lead to a change in the correlation between continuous characters over time or on different branches of a phylogenetic tree. Shifts in genetic or functional constraint, in the selective regime, or in some combination thereof can influence both the evolution of continuous traits and their relation to each other. These changes can often be mapped on a phylogenetic tree to examine their influence on multivariate phenotypic diversification. We propose a new likelihood method to fit multiple evolutionary rate matrices (also called evolutionary variance–covariance matrices) to species data for two or more continuous characters and a phylogeny. The evolutionary rate matrix is a matrix containing the evolutionary rates for individual characters on its diagonal, and the covariances between characters (of which the evolutionary correlations are a function) elsewhere. To illustrate our approach, we apply the method to an empirical dataset consisting of two features of feeding morphology sampled from 28 centrarchid fish species, as well as to data generated via phylogenetic numerical simulations. We find that the method has appropriate type I error, power, and parameter estimation. The approach presented herein is the first to allow for the explicit testing of how and when the evolutionary covariances between characters have changed in the history of a group.     

Prey abundance and male parental behaviour in Acrocephalus warblers

This study examined the prey abundance at nesting sites of five different Acrocephalus warbler species. Intraspecific variations in prey density were analysed to determine the relative significance of this ecological factor for different mating systems and components of male parental behaviour. The Great Reed Warbler Acrocephalus arundinaceus, a facultatively polygynous species, nested in areas with the highest insect abundance. Its intraspecific variation in prey density (between different territories) was the highest while the male: female offspring feeding ratio was the lowest. At the other extreme, the monogamous Moustached Warbler Acrocephalus melanopogon and Reed Warbler Acrocephalus scirpaceus nested in areas with the lowest prey abundance and lowest intraspecific variation. Males of these species had the highest involvement in feeding young. In the Moustached Warbler and Marsh Warbler Acrocephalus palustris, an intraspecific comparison revealed a negative correlation between insect abundance and the male feeding component; a tendency in this direction was found for the Reed Warbler, while no correlation was evident in the polygynous Great Reed Warbler. These data demonstrate a general pattern relating prey abundance, mating systems and male parental investment on an interspecific level. However, intraspecific correlations revealed a net of complex interdependence. One of the factors which may be important is resource predictability. We found a significant correlation between certain vegetation types and insect abundance. The vegetation composition of territories is further influenced by interspecific dominance relationships whereby the dominant Great Reed Warbler occupies territories with the vegetation type which correlates with high prey abundance while the overlapping Moustached Warbler and Reed Warbler are restricted to areas with lower insect density.     

INTERPOPULATION DIFFERENCES IN HOST PREFERENCE AND THE EVOLUTION OF LEARNING IN THE BUTTERFLY,BATTUS PHILENOR

The host-discrimination behavior of the adult female pipevine swallowtail butterfly (Battus philenor) was investigated for two populations, an east Texas population that uses two host species with different leaf shapes and a Virginia montane population that uses one host species with a single leaf shape. While Texas and Virginia females exhibited similar chemotactile responses after landing on various host species, butterflies from each population landed more frequently on certain host species used by that particular population. Despite this difference in searching behavior, Texas and Virginia populations were equally capable of learning to search for the leaf shape of a particular host species in artificial enclosure arrays. In addition, learning of leaf-shape preference was confounded equally when each population was introduced into arrays containing all the host species found in both populations. The lack of differentiation in learning of leaf-shape preference between populations that differ in host breadth and host preference argues against the specific hypothesis that learning of leaf-shape preference represents a local adaptation that permits foraging butterflies in the east Texas population to respond to seasonal changes in the relative quality or abundance of host species that differ in leaf shape. Three hypotheses are proposed to explain the apparent absence of interpopulation genetic variation in learning traits. One hypothesis supposes that learning of leaf-shape discrimination is mediated by the same physiological mechanisms that permit females to learn to discriminate among suitable and unsuitable conspecific plants. Selection for restriction of learning of leaf-shape preference in the Virginia montane population may therefore be constrained by selection for learning of other types of discrimination behavior.     

Using the EM algorithm to weight data sets of unknown precision when modelling fish stocks

Stocks of commercial fish are often modelled using sampling data of various types, of unknown precision, and from various sources assumed independent. We want each set to contribute to estimates of the parameters in relation to its precision and goodness of fit with the model. Iterative re-weighting of the sets is proposed for linear models until the weight of each set is found to be proportional to (relative weighting) or equal to (absolute weighting) the set-specific residual invariances resulting from a generalised least squares fit. Formulae for the residual variances are put forward involving fractional allocation of degrees of freedom depending on the numbers of independent observations in each set, the numbers of sets contributing to the estimate of each parameter, and the number of weights estimated. To illustrate the procedure, numbers of the 1984 year-class of North Sea cod (a) landed commercially each year, and (b) caught per unit of trawling time by an annual groundfish survey are modelled as a function of age to estimate total mortality, Z, relative catching power of the two fishing methods, and relative precision of the two sets of observations as indices of stock abundance. It was found that the survey abundance indices displayed residual variance about 29 times higher than that of the annual landings.     

The relationship between feeding preferences and consumption rates in grass carp and grass carp × bighead carp hybrids

The relationship between food preference hierarchy and consumption rate was examined for the grass carp, Ctenopharygodon idella , and its Fl hybrid (grass carp × bighead carp). Preferences of both types of fish were similar, although hybrids consumed vegetation at a much lower rate. For both, relative preference in feeding trials with mixed plant species was significantly correlated with consumption rate in monospecific feeding experiments. No correlations were found between preference and caloric content, protein content or relative water content. The hypothesis is proposed that preference hierarchies reflect relative handling times of different food types and that these fish maximize 'through-put' by preferentially consuming plant species which can be most rapidly ingested.