Microbial diversity and the “lower-limit” problem of biodiversity

Science is now studying biodiversity on a massive scale. These studies are occurring not just at the scale of larger plants and animals, but also at the scale of minute entities such as bacteria and viruses. This expansion has led to the development of a specific sub-field of “microbial diversity”. In this paper, I investigate how microbial diversity faces two of the classical issues encountered by the concept of “biodiversity”: the issues of defining the units of biodiversity and of choosing a mathematical measure of diversity. I also show that the extension of the scope of biodiversity to microbial entities such as viruses and many other not-clearly-alive entities raises yet another foundational issue: that of defining a “lower-limit” of biodiversity.     

Modification of the phosphite induced resistance response in leaves of cowpea infected with Phytophthora cryptogea by α-aminooxyacetate

Treatment of detached cowpea leaves with phosphite, the active breakdown product in plant tissues of fosetyl-Al, leads to the cessation of growth of Phytophthora cryptogea within 24 h of inoculation. Pretreatment of leaves with α-aminooxyacetate (AOA), an inhibitor of the phenylpropanoid pathway, increases the size of lesions in phosphite treated leaves and induces a complete susceptibility at 5 mM. By 24 h after inoculation, phenylalanine ammonia-lyase (PAL) activity is higher in phosphite treated leaves than in untreated leaves. The effects of AOA on PAL activity are paralleled with the effects of the increase of the spread of infection. AOA treatment does not affect phosphite uptake by fungal cells and leaf tissues, while it inhibits kievitone and phaseollidin accumulation in infected treated leaves and causes a reduction in extractable PAL activity. These results suggest that cessation of fungal growth in vivo is not as a result of a direct effect of phosphite on the fungus and strongly support a role of the host defence reactions in the mode of action of phosphite.     

‘Chillum’ jar,a better technique for screening of rhizobia under summer conditions

Summary In the present investigations ‘Chillum’ jar assembly was found to provide more favourable environmental conditions for rhizobia to nodulate leguminous plants particularly under summer conditions than the usual Leonard jar assembly. When thirty pigeon pea rhizobia isolates were tested for their nodulation efficiency in both Leonard jars as well as ‘Chillum’ jars, it was noticed that there was no nodulation in any of the isolates under Leonard jars whereas all isolates were nodulating well under ‘Chillum’ jars conditions. This was probably due to lowering of temperature in ‘Chillum’ jar caused by rapid evaporation from the outer surface of ‘Chillum’ jar assembly. The maximum temperature recorded in ‘Chillum’ jar was 34°C whereas in Leonard jars it was 46.5°C.     

Evaluation of antiserum raised againstPestalotiopsis theœ for the detection of grey blight of tea by ELISA

Polyclonal antiserum was raised against the mycelial extract ofPestalotiopsis theœ and immunoglobulin fractions were purified by ammonium sulfate fractionation and chromatography on DEAE-Sephadex. In enzyme-linked immunosorbent assay, antiserum dilution up to 1∶16000 detected homologous antigen at a 5 mg/L concentration, and at 1∶125 antiserum dilution fungal antigens could be detected at a concentration as low as 25 μg/L. In fifteen varieties of tea tested, originating from Darjeeling, UPASI and Tocklai breeding stations, absorbance values of infected leaf extracts were significantly higher than those of healthy extracts at a concentration of 40 mg/L in indirect ELISA. ELISA-positive material was detected in tea leaves as early as 12 h after inoculation withP. theœ. At antiserum dilutions up to 1∶125, the pathogen could be detected in inoculated leaf extracts up to antigen concentration of 2 mg/L. The antiserum reacted with two other isolates ofP. theœ tested but not with the antigens from mycelial extracts ofGlomerella cingulata andCorticium invisum or with extracts of tea leaves inoculated with these pathogens. The results demonstrate that ELISA can be used for early detection ofP. theœ in leaf tissues even at a very low level of infection.     

Genetic diversity of termite-egg mimicking fungi “termite balls” within the nests of termites

Antagonistic or mutualistic interactions between insects and fungi are well-known, and the mutualistic interactions of fungus-growing ants, fungus-growing termites, and fungus-gardening beetles with their respective fungal mutualists are model examples of coevolution. However, our understanding of coevolutionary interactions between insects and fungi has been based on a few model systems. Fungal mimicry of termite eggs is one of the most striking evolutionary consequences of insect–fungus associations. This novel termite–fungus interaction is a good model system to compare with the relatively well-studied systems of fungus-growing ants and termites because termite egg-mimicking fungi are protected in the nests of social insects, as are fungi cultivated by fungus-growing ants and termites. Recently, among systems of fungus-growing ants and termites, much attention has been focused on common factors including monoculture system for the ultimate evolutionary stability of mutualism. We examined the genetic diversity of termite egg-mimicking fungi within host termite nests. RFLP analysis demonstrated that termite nests were often infected by multiple strains of termite egg-mimicking fungi, in contrast to single-strain monocultures in fungus combs of fungus-growing ants and termites. Additionally, phylogenetic analyses indicated the existence of a free-living stage of the termite egg-mimicking fungus as well as frequent long-distance gene flow by spores and subsequent horizontal transmission. Comparisons of these results with previous studies of fungus-growing ants and termites suggest that the level of genetic diversity of fungal symbionts within social insect nests may be important in shaping the outcome of the coevolutionary interaction, despite the fact that the mechanism for achieving genetic diversity varies with the evolutionary histories of the component species.     

Examining the genetic diversity of the orange blossom wheat midge,Sitodiplosis mosellana (Géhin), across North America

The orange blossom wheat midge, Sitodiplosis mosellana (Géhin) (Diptera: Cecidomyiidae), is a significant pest of wheat (Triticum spp.) grown in the Northern Hemisphere. It was accidently introduced to North America over 200 years ago and has subsequently spread throughout the northern Great Plains. Since 2010, several Canadian spring wheat varieties containing the resistance gene Sm1 have been released. Due to the potential of wheat midge populations to evolve virulent biotypes to Sm1, cultivars containing Sm1 are grown with a susceptible cultivar in an interspersed refuge. An understanding of the genetic diversity of wheat midge populations could provide important information on the potential development of resistance to Sm1. In the current study, we used two mitochondrial genes (CO1 and ND4) from wheat midge collected across the northern Great Plains and Québec in North America to assess population structure and genetic diversity. We found limited genetic diversity and population structure across the sampled North American populations. We also assessed North American haplotype similarity to wheat midge collected from Europe and China and found high similarity between North American and European populations, although sampling in Europe was limited. This supports the hypothesis that North American populations originated from Europe.     

Electroencephalographic evidence of “Gestalt” in the perception of movement by the frog

Summary Some records, obtained from the surface of the optic tectum of the frog with moving visual stimuli are presented as evidence of a global oscillation of the tectal activity whose time course is specific for different patterns of stimulation.The research reported in this document has been sponsored by the 6570th Aerospace Medical Research Laboratory under grant AF EOAR 65-44 through the European Office of Aerospace Research (OAR), United States Air Force.     

Assessing genetic diversity of Citrus by DArT_seq™ genotyping

In citrus despite the diversity among cultivated genotypes related to morphological, physiological, and agronomic traits, low polymorphism is detected at the molecular marker level, and the number of DNA-markers technologies has been insufficient to identify genetic diversity among all citrus varieties. However, DArT_seq? markers can overcome this limitation and identify genetic diversity in several species of citrus. This work developed and applied DArT_seq? platform to study the relationships among species, cultivars, and hybrids of citrus. DArT_seq? yielded a total of 37,260 polymorphic presence/absence markers that generated a dendrogram of similarity among the studied genotypes. The results confirmed the relationships of sweet orange, mandarin, and citron species. DArT_seq? markers showed extensive genetic variation among citrus species and can be applied to Citrus genetic diversity studies.     

The problem of the acts duration measurement in relation to the “focal-animal” technique of behavioral recording

The focal-animal technique assumes the continuous recording of the behavior of an individual during a certain time interval. The length of this interval (sampling unit) can be problematic when estimating the duration of behavioral acts. Two acts from the behavioral repertoire of the ant Leptothorax fuenteiwere focused on in this work at different ranges of temporal scales. Analyzing these acts we show the possibility of existence of a sampling artifact, in such a way that the estimates of the durations of the acts would be forced to depend upon the length of the sampling unit that is being used.     

Endocytosis of 1,3-β-glucans by broad bean cells at the penetration site of the cowpea rust fungus (haploid stage)

Te penetration hypha of basidiospore-derived infection structures of the cowpea rust fungus (Uromyces vignae Barclay) in epidermal cells of the nonhost, broad bean (Vicia faba L.), was studied with the electron microscope after high-pressure freezing and freeze substitution. After fungal invasion of the epidermis, a plug in the penetration hypha separated the infection structures on the cuticle from the intraepidermal vesicle of the fungus. The plug and the fungal cell wall reacted with a polyclonal 1,3-β-glucan antibody. The plug in the haploid stage seems to have a task similar to the septum formed in the diploid stage of the fungus. Around the penetration hypha, the plant wall stained darkly and a papilla was deposited by the plant. In the papilla, 1,3-β-glucans were labelled by a monoclonal and a polyclonal antibody. In the infected epidermal cell, clathrin-coated pits, coated vesicles, partially coated reticula and multivesicular bodies were found. The contents of the coated pits, coated vesicles, partially coated reticula and multivesicular bodies bound to monoclonal and polyclonal 1,3-β-glucan antibodies. Accumulation and uptake of this paramural material into the plant cell by endocytosis is concentrated at the fungal penetration site. It may influence the host-parasite interaction.     

Yeast diversity in rice-cassava fermentations produced by the indigenous Tapirapé people of Brazil

The Tapirapé people of the Tapi'it?wa tribe of Brazil produce several fermented foods and beverages, one of which is called 'cauim'. This beverage usually makes up the main staple food for adults and children. Several substrates are used in its production, including cassava, rice, corn, maize and peanuts. A fermentation using rice and cassava was conducted, and samples were collected at 4-h intervals for microbial analysis. The yeast population was low at the beginning of the fermentation and reached 6.9 x 10(7) CFU mL(-1) after 48 h. During the fermentation process common yeast species were identified by sequencing of the D1/D2 domain of the large-subunit (26S) rRNA gene. The predominant yeast species found was Candida tropicalis. Candida intermedia, Candida parapsilosis, Pichia guilliermondii, Saccharomyces cerevisiae and Trichosporon asahii were also found in high numbers during the fermentation. Exophiala dermatidis, often associated with blastomycosis, was found in the mass before inoculation and during the initial stages of the fermentation. Examination of these indigenous fermented foods may provide clues as to how food production and preservation can be expanded and thereby contribute to improve nutrition in native tribes in the region.     

Can the RNA of the cowpea chlorotic mottle virus be released through a channel by means of free diffusion? A test in silico

Cowpea chlorotic mottle virus (CCMV), a plant virus which is member of the Bromoviridae family, is used as a model for the diffusion of a random, short, single stranded RNA, [5'-R(PGpGpApCpUpUpCpGpGpUpCpC)-3')], through a channel on the pseudo-three-fold axis using molecular dynamic simulations. This proposition is based the fact that CCMV undergoes a dynamic structural transition as a response to changes of pH, temperature and ionic strength. Results indicate that the RNA looses its secondary structure and moves into the capside channel by free diffusion. These results are congruent with the hypothesis suggesting that the CCMV capside does not have to dissolve in order to release the RNA into the host.     

The game of “gossip” analyzed by the theory of information

This paper deals with an analysis of a distributed model of the game of “gossip”, in which a message is passed through a line of individuals, and the final (in general, garbled) result is compared with the original ungarbled message. The deterioration of information (defined in the sense of Shannon and Wiener) along the line is calculated, and exact as well as asymptotic formulas suggesting approximate linear electric network analogues are obtained.     

Structural models of “simple” sense organs by the example of the first Metazoa

Basic variants of the evolutionary program of formation of simple sensory systems-structural models of gravitation receptor, organ of sight, chemoreceptor organ as well as of the nervous system at early stages of the Metazoan phylogenesis—are considered using results of our own morphofunctional studies and of literature data.