一种利于蛋白质回收的快速SDS-聚丙烯酰胺凝胶电泳染色-脱色方法

在实践基础上摸索出一种快速并有利于蛋白质回收的SDS-聚丙烯酰胺凝胶电泳染色-脱色方法：经常用的考马斯亮蓝R-250染色液短暂染色后直接用250 mmol/L KCl溶液脱色.这种方法染色-脱色的清晰程度与常规的染色-脱色方法接近,而且能使蛋白质回收率提高三倍多.     

考马斯亮蓝—银染色法——一种更灵敏的凝胶蛋白质染色法

我们曾报道一种重复性好而灵敏的电泳凝胶蛋白质染色法。其后发现银染色法虽然灵敏,但有一定的选择性,某些蛋白不易被银染色着色。若将考马斯亮蓝染色与银染色相结合,则可弥补彼此弱点,而且可提高灵敏度,是一种较为理想的凝胶蛋白质染色法。一、材料与方法(一)试剂丙烯酰胺、双丙烯酰胺、SDS 为国产品,均重结晶后使用;考马斯亮蓝 G—250及戊二醛(Fluka 产品);硝酸银 GR 级(西安化学试剂厂产品);Ampholine(LKB 产品);尿素     

苏芸金杆菌伴孢晶体和芽孢孢衣的蛋白质组分及其与毒力的关系

研究了苏芸金杆菌(Bacillus thuringiensis)3个变种6个菌株的提纯伴孢晶体和芽孢对大蜡螟(Galleria mellonella)和大菜粉蝶(Pieris brassicae)的毒力、晶体的蛋白质和多肽成分及芽孢衣中的类晶体蛋白质成分.生物测定表明,晶体毒力高于芽孢,在总数量相同的情况下,晶体和芽孢近1:1的混合物的毒力高于单独的晶体或芽孢.芽孢衣中存在一种类似晶体蛋白质的成分,无晶体突变株及无效野生株的芽孢则无此种蛋白质且对两种昆虫无毒.变种wuhanensis和变种galleriae的晶体含MW138000的主要蛋白质和63000的次要蛋白质,经碱性缓冲液溶解后,上清液含MW138000的蛋白质,沉淀中含MW63000的蛋白质;变种aizawai的晶体中仅含138000的蛋白质.对大蜡螟无毒的HD-11(var.aizawai)晶体的蛋白质成分有别于上述晶体,其胰蛋白酶消化物的SDS凝胶电泳图型显示少2条多肽带,但对大菜粉蝶仍有效.结果表明,苏芸金杆菌的芽孢在昆虫病理中有重要作用,伴孢晶体的蛋白质和多肽成分与它们对昆虫的毒力特性之间有密切关系.     

聚丙烯酰胺凝胶中蛋白质快速染色的改良法

聚丙烯酰胺凝胶中蛋白质的染色常采用考马斯亮蓝R250为染料进行染色,此法不仅操作繁琐、费时,而且由于需要脱色,很容易将一些染色较弱的蛋白区带颜色褪去,使之不能观察,灵敏度只能达到0.25μg。Reisner等人报道了以考马斯亮蓝G250为染料的快速简便染色方法,它能迅速地观察到凝胶中     

分子生物学在蛋白质结晶中的应用

获得具有高分辨率的蛋白质晶体是目前蛋白质结构测定的主要瓶颈 . 蛋白质结晶受很多因素影响,蛋白质自身是结晶时最重要的变量,可以说,蛋白质的内在特性在某种程度上决定了其能否结晶以及所得晶体分辨率的高低 . 近年来分子生物学尤其是蛋白质工程的应用有效地提高蛋白质的溶解度、均一性及可结晶性等内在特性,促进蛋白质的结晶,成为提高蛋白质结晶能力和蛋白质晶体分辨率的有效途径 .     

蛋白质定量方法的进展

本文在简要比较常用蛋白质定量方法的基础上,结合自己的工作,选择性地叙述了Lowry法、考马斯亮蓝G-250染料测定蛋白质的改进法。还介绍了银染色定量法和4-甲酸喹啉测定蛋白质含量的新方法。     

小鼠晶体蛋白质组的双向电泳和质谱鉴定研究

目的应用双向电泳和质谱技术研究5周龄小鼠晶体蛋白质组。方法提取小鼠晶体总蛋白,进行固相pH梯度（IPG）等电聚焦双向电泳,胶体考马斯亮蓝R-250染色,使用PDQuest7．30图像分析软件分析电泳图像。选择主要蛋白点胶上酶解,应用基质辅助激光解析电离飞行时间／飞行时间（MALDI—TOF／TOF）仪器进行串联质谱（MS／MS）鉴定。结果上样量为882μg和190μg时,分别检测370±41蛋白点（n=3）和57±5个蛋白点（n=3）。高上样量能够较好地分离晶体低丰度蛋白,如念珠状纤维结构蛋白BFSP;低上样量可很好地分离高丰度蛋白-晶体蛋白（包括αA、αB;βA1～βA4;βB1～βB3;γA～γF和γS等）。质谱鉴定得到1种细胞骨架蛋白和16种高丰度晶体蛋白。结论双向电泳和质谱技术有效考察了晶体总蛋白质,为分析白内障形成过程中蛋白质的表达改变提供了新的方法和途径。     

蛋白质晶体的优化生长

蛋白质晶体的优化生长是获得高质量蛋白质晶体, 进而得到高精度晶体结构的有效途径.针对不同的晶体生长方法,已尝试了不同的优化手段,这对改善某些蛋白质晶体的质量显示了明显的成效.然而,鉴于蛋白质晶体生长的多样性与复杂性,这些方面均未发展成为实用的技术.文章综述了这类研究进展,分析了各手段的利弊,并指出了应着重解决的问题.     

一种简便的考马斯亮蓝G250蛋白质染色方法

介绍一种快速、简便、几乎无背景的考马斯亮蓝G250(CBB G250)染色方法.该方法所用试剂仅为稀盐酸和CBB G250, CBB G250的工作浓度为0.0015%,灵敏度达0.02 μg/带, 染色2 h达70%,4 h以上或染色过夜即可充分染色.与以往的考马斯亮蓝染色方法相比,该方法有经济方便、灵敏度高、几乎无背景等优点,便于推广应用.     

用有限酶切法分析蛋白质的氨基酸序列

报道了一个通过有限酶切蛋白质产生多肽片段的方法.蛋白质经单向SDS-聚丙烯酰胺凝胶电泳(SDS-PAGE)分离和用考马斯亮蓝短暂染色后,切下所需的蛋白质带,将其放入另一个SDS-PAGE凝胶的样品槽内,在电泳过程中该蛋白质被蛋白酶如蛋白酶V8降解,所产生的多肽片段随之被分离.电泳结束后,将多肽片段电印迹至聚偏二氟乙烯(polyvinylidene difluoride,PVDF)膜上.这些多肽片段从PVDF膜上切下后可以直接被用于分析氨基酸序列.该方法能广泛适用于分析一般蛋白质和N端被修饰蛋白质的氨基酸序列.     

The structure of nicotine blue from Arthrobacter oxidans

Summary Nicotine blue was separated into two major components. Their chromophores are anions of the diazadiphenoquinones (1) (nicotine blue I) and (2) (nicotine blue II). The dihydrate of the potassium salt of (1) is the major component of the extracellular crystals which are excreted on a solid medium. The acid-labile nicotine blue II is water-soluble and the main coloring agent of the agar and culture broth respectively.     

Ultrastructure of Protein Crystals in Potato and Tomato Trichomes

Large protein crystals were located in the leaf and stem trichomesof Solanum tuberosum L. and Lycopersicon esculentum Mill. Inpotato the crystals ranged from 1.05 to 4.5 µm (average2.3 µm) on a side and in tomato they ranged from 1.16to 3.5 µm (average 2.7 µm) on a side. The proteinnature of the crystals was determined by histochemical stainingwith Coumassie brilliant blue R250 and aniline blue black. Thecrystalline structure of the inclusions was observed in ultrathinsections using electron microscopy. In potato, in cleared areasof the cytoplasm, ribosomes were observed scattered among proteinfilaments. The filaments were approximately 7 nm in diameter.Morphologically similar crystals were observed in the tomatotrichomes but the protein filaments were smaller (approximately4 nm in diameter). Protein crystals were also observed in palisadeand spongy parenchyma and epidermal leaf cells in tomato. Protein crystals, trichomes, potato, Solanum tuberosum L., tomato, Lycopersicon esculentum Mill., ultrastructure     

A crystalline pigment produced from 2-hydroxypyridine by arthrobacter crystallopoietes n.sp.

Summary A bacterium was isolated from soil which utilizes 2-hydroxypyridine as sole source of carbon and nitrogen. When grown on solid medium with this substrate massive amounts of green rectangular crystals are deposited extracellularly in the colony mass. The pigment producing organism proved to be a hitherto undescribed species to which the name Arthrobacter crystallopoietes was applied. The pigment formed is characterized qualitatively by the following properties: it is an oxidation product of 2-hydroxypyridine probably still containing a six-membered heterocyclic ring; it exists as an anion with an intense blue color in neutral or slightly alkaline solution and as a metal salt in the deposited crystals; it precipitates from acid solution as a red water-insoluble free acid; it can be reversible oxidized and reduced, being colorless in the reduced form; and in solution it is spontaneously oxidized by air, the reaction being very rapid at alkalineph. The ultraviolet, visible and infrared spectra of the blue and red forms are presented. The properties of the pigment show that it is a member of a chemically poorly defined group of compounds termed azaquinones and that it is related to but not identical with pigments produced by the bacterial oxidation of nicotine, nicotinic acid and isonicotinic acid.This investigation was supported in part by grants G9882 and GB736 from the National Science Foundation.     

Salt crystal deposition as a reversible mechanism to enhance photoprotection in black mangrove

Mangrove forests are ecosystems made up of several woody plants living in saline coastal sedimentary habitats. In order to deal with the high salinity of the substrate, mangrove trees possess a number of different mechanisms to exclude, sequestrate or excrete the excess of salt. The black mangrove (Avicennia germinans L.), one of the dominant species in Central America, is characterized by high levels of salt excretion through epidermal glands. In this study, our aim was to examine whether, apart from its obvious role in salt tolerance, the formation of salt crystals on the upper leaf surface of black mangrove might represent an unusual and dynamic photoprotection mechanism. For this purpose, the reflection of light and a number of physiological parameters were studied during the dry and rainy seasons in black mangroves growing in the Juan Venado Island Nature Reserve (Nicaragua). Excreted salt increased the reflectance of the leaf surface mainly in the blue and red regions of the spectrum. By removing salt crust from the leaf surface, we demonstrated that during the most stressful periods (dry season at noon), this feature allowed leaves to maintain a higher photochemical efficiency and a lower leaf temperature as compared to uncovered leaves. Furthermore, this mechanism is fully reversible when conditions become more favorable, as salt crystals dissolve, forming drops. Thus, while being a detoxification mechanism developed mainly to avoid osmotic imbalance in the tissues, the excretion of salt through the leaves in black mangroves is an example of “exaptation”, as it has positive collateral effects on the photosynthetic performance of the plant, protecting A. germinans from overheating and photodamage during the harsher periods.     

Fluorescent redox dyes

Summary The reduction of a new series of tetrazolium salts to red fluorescent formazans by Ehrlich ascites tumor cells is described. The qualitative effect on this reaction of two cell surface-active compounds and of six exogenous electron carriers was investigated by varying the incubation conditions. After incubation of Ehrlich ascites cells with the new colourless, watersoluble 5-cyan-2.3-ditolyltetrazolium salts, bright red water-insoluble formazan crystals on the cell surface can be observed under fluorescence microscopy. The production of formazan is enhanced by 12-0-tetradecanoylphorbol-13-acetate (TPA) or digitonin (DIG), two potent stimulators of oxygen consumption or by the electron carriers phenzazine methosulphate (PMS), 1-methoxy-phenazine methosulphate (MPMS), meldola blue (MB), methylen blue (MTB), and 2.6-dichlorindophenol (DCIP). These results provide further evidence for the existence of redox enzymes bound to the plasma membrane of intact ascites cells and for a free radical mechanism of tetrazolium salt reduction. The fluorescence property of the new redox dyes offers the advantage of high sensitivity. Moreover, their greater homogeneity relative to the commonly used di-tetrazolium salts lowers the chances of misinterpretations due to impurities. The possible application of these new mono-tetrazolium salts to cytochemical investigations of oxidative metabolic reactions is discussed.     

Advantages and disadvantages of silver staining of proteins in polyacrylamide gel

Sensitivity of protein staining with Serva blue G-250 (Coomassie brilliant blue G-250 analogue) in polyacrylamide gel was determined. It has been shown that protein staining with 0.1% Serva blue G-250 results in the recovery of 80 to 35 ng of single protein, that is almost 10 times higher than reported previously for Coomassie brill. blue G-250 (or R-250) staining. The comparison of the sensitivity of Serva blue G-250 protein staining in PAAG and AgNO3 has shown that AgNO3 staining was approximately 18-30 (but not 100 times, as it had been thought before) times more effective for the majority of proteins under study. Silver staining of some proteins, for instance ribonuclease and a number of retrovirus-specific structural proteins, was of lower efficacy. Thus, to obtain reliable results protein electrophoresis in PAAG should be followed by both staining procedures.     

Removal of salt from a salt-induced protein crystal without cross-linking. Preliminary examination of "desalted" crystals of phosphoglucomutase by X-ray crystallography at low temperature.

A model procedure for removing salt from relatively fragile salt-induced protein crystals is proposed. The procedure is based on physical principles and is validated by using millimeter-size crystals of rabbit muscle phosphoglucomutase grown from a 2.1 M solution of ammonium sulfate. Three types of operations are included in the procedure: initial transfer to salt solutions of reduced concentration; transfer to the organic-rich phase of an equilibrium biphasic mixture obtained with aqueous solutions of polyoxyethylene and the salt; and addition of various replacement cosolutes in aqueous solutions of polyoxyethylene to reduce osmotic stress on the crystal as the remaining salt is removed. A critical feature of the overall procedure is maintenance of near equilibrium throughout by using a large number of steps involving small changes in solute concentration. The conditions used in the actual transfer were adjusted to eliminate the fracturing of crystals by visually distinguishing between two opposing types of fracture patterns: those produced by osmotic crushing as opposed to osmotic expansion. Basic requirements for a successful procedure with other protein crystals are a high permeability toward small solutes and a relatively slow dissolution rate at salt concentrations for which biphasic mixtures can be obtained. Desalted crystals of phosphoglucomutase have no visible fractures, are stable in the final solution for at least a week, and exhibit no noticeable change in the resolution of their X-ray diffraction pattern. In fact, desalted crystals can be rapidly cooled to 160 K, whereas untreated crystals are almost completely disordered by the same cooling procedure. The component of the desalting mixture whose presence is crucial to the success of the cooling process is polyoxyethylene, which apparently impedes the formation of ice within the protein crystal. Diffraction data obtained with an area-detector diffractometer did not differ significantly, either in terms of quality or resolution range, between crystals in 2.3 M ammonium sulfate at room temperature and crystals at 160 K in which ammonium sulfate had been replaced by glycine. The successful use of the following replacement solutes, instead of glycine, also is documented: sucrose, glycerol, and a low molecular weight poly(ethylene glycol) (PEG-400).     

The Use of Evan's Blue Stain to Test the Survival of Plant Cells after Exposure to High Salt and High Osmotic Pressure

The survival of plant cells may be tested rapidly and convenientlyby staining tissue sections in a solution of Evan's blue (0·5%w/v) after exposure to solutions of high salt concentrationor low osmotic potential. Living cells retain the ability toexclude Evan's blue at the plasma membrane and remain theirnatural colour. Cells damaged by salt or osmotic stress areunable to exclude Evan's blue, are stained deep blue, and arereadily distinguished upon microscopic examination.     

Protection of crystal-induced polymorphonuclear leukocyte membranolysis by phosphocitrate

The protection afforded by phosphocitrate, a phosphorylated polycarboxylic acid, against crystal-induced membrane damage to polymorphonuclear leukocytes was studied in vitro. Membranolysis was assessed by nitro blue tetrazolium salt reduction, lactate dehydrogenase release, and scanning electron microscopy. Phosphocitrate protected strongly against hydroxyapatite crystal-induced damage, an action attributable to crystal surface binding of phosphocitrate rather than to the membrane. The ability of phosphocitrate to prevent hydroxyapatite crystallization, together with its membrane protective effect against preformed crystals, would suggest that the compound might have a useful future role against crystal-induced arthropathies.     

An Electron Microscope Study of the Path of Water Movement in Transpiring Leaves of Cotton (Gossypium hirsulum L.)

Precipitation of ferrocyanide by ferric ions in cotton leavesproduced electron-opaque crystals visible with othe electronmicroscope and identifiable as Prussian blue by X-ray and electrondiffraction. These crystals were formed within the lumina andexposed primary walls of the tracheary elements but not withintheir secondary walls. The precipitation pattern indicated thatwater moved from the tracheary elements into the parenchymaof the bundle sheath and bundle sheath extensions. From thesecells water moved into the epidermis or through the mesophyllto the transpirational exits. Prussian blue accumulated in thewalls of cells lining the substomatal cavities and to a lesserextent between adjacent covering hairs. Ferrocyanide anionsdid not follow the water stream through the cuticle. In parenchymaand epidermal cells Prussian blue crystals were found withinthe primary wall, in the region between the plasma-lemma andthe cell wall, and within the protoplast.