Zooplankton, phytoplankton and the microbial food web in two turbid and two clearwater shallow lakes in Belgium

Components of the pelagic food web in four eutrophic shallow lakes in two wetland reserves in Belgium (Blankaart and De Maten) were monitored during the course of 1998–1999. In each wetland reserve, a clearwater and a turbid lake were sampled. The two lakes in each wetland reserve had similar nutrient loadings and occurred in close proximity of each other. In accordance with the alternative stable states theory, food web structure differed strongly between the clearwater and turbid lakes. Phytoplankton biomass was higher in the turbid than the clearwater lakes. Whereas chlorophytes dominated the phytoplankton in the turbid lakes, cryptophytes were the most important phytoplankton group in the clearwater lakes. The biomass of microheterotrophs (bacteria, heterotrophic nanoflagellates and ciliates) was higher in the turbid than the clearwater lakes. Biomass and community composition of micro- and macrozooplankton was not clearly related to water clarity. The ratio of macrozooplankton to phytoplankton biomass – an indicator of zooplankton grazing pressure on phytoplankton – was higher in the clearwater when compared to the turbid lakes. The factors potentially regulating water clarity, phytoplankton, microheterotrophs and macrozooplankton are discussed. Implications for the management of these lakes are discussed.     

Response of waterbirds to alternating clear and turbid water phases in two shallow Mediterranean lakes

Albufera de Adra (Southern Spain) constitutes an internationally-recognised marsh for waterbirds; important populations of some endangered species such as White-headed Duck and Red-crested Pochard overwinter and breed in its two shallow permanent lakes (Lake Honda and Lake Nueva). In a recently published article, we revealed the factors responsible for the irregular alternation between phytoplankton-dominated turbid phases and macrophyte-dominated clear water phases in Lake Honda and Lake Nueva. In this note, we try to clarify the impact of such an alternation of equilibrium states on the waterbird dynamics. Marked increments in abundance, and brood recruitment of dabbling and diving waterbirds were recorded during the clear water phases in contrast with the turbid water phases, as the increase of macrophytes associated with increased water transparency attract waterbirds for available food. Implications for ecosystem management, restoration and conservation are identified.     

Habitat selection and diel distribution of the crustacean zooplankton from a shallow Mediterranean lake during the turbid and clear water phases

1. The fish fauna of many shallow Mediterranean Lakes is dominated by small‐bodied exotic omnivores, with potential implications for fish–zooplankton interactions still largely unknown. Here we studied diel variation in the vertical and horizontal distribution of the crustacean plankton in Lake Vela, a shallow polymictic and eutrophic lake. Diel sampling was carried out on three consecutive days along a horizontal transect, including an open‐water station and a macrophyte (Nymphaea alba) bed. Since transparency is a key determinant of the predation risk posed by fish, the zooplankton sampling campaigns were conducted in both the turbid (autumn) and clear water (spring) phases. 2. In the turbid phase, most taxa were homogeneously distributed along the vertical and horizontal axes in the three consecutive days. The only exception was for copepod nauplii, which showed vertical heterogeneity, possibly as a response to invertebrate predators. 3. In the clear water phase, most zooplankton taxa displayed habitat selection. Vertically, the general response consisted of a daily vertical migration (DVM), despite the limited depth (1.6 m). Horizontally, zooplankters showed an overall preference for the pelagic zone, independent of the time of the day. Such evidence is contrary to the postulated role of macrophytes as an anti‐predator refuge for the zooplankton. 4. These vertical (DVM) and horizontal (macrophyte‐avoidance) patterns were particularly conspicuous for large Daphnia, suggesting that predation risk from size‐selective predators (fish) was the main factor behind the spatial heterogeneity of zooplankton in the spring. Thus, the difference in the zooplankton spatial distribution pattern and habitat selection among seasons (turbid and clear water phases) seems to be mediated the predation risk from fish, which is directly related to water transparency. 5. The zooplankton in Lake Vela have anti‐predator behaviour that minimises predation from fish. We hypothesise that, due to the distinct fish community of shallow Mediterranean lakes, aquatic macrophytes may not provide adequate refuge to zooplankters, as seen in northern temperate lakes.     

Trophic web structure in a shallow eutrophic lake during a dominance shift from phytoplankton to submerged macrophytes

In Lake Krankesjön, southern Sweden, sago pondweed (Potamogeton pectinatus L.) and a stonewort (Chara tomentosa L.) expanded spatially during the second half of the 1980's after more than a decade of phytoplankton blooms and sparse submerged vegetation. During the expansion of submerged plants the number of resting and breeding waterfowl increased. The increase was significant for herbivorous birds such as coot (Fulica atra L.) and mute swan (Cygnus olor (Gmelin)), but also for omnivorous dabbling ducks. The shift from phytoplankton to submerged macrophytes caused structural changes on higher trophic levels, and an altered trophic web developed. The density of planktonic Cladocera decreased, which is suggested to be a result of decreased phytoplankton productivity and biomass as nutrient levels dropped. The benthic macroinvertebrate assemblage changed from low diversity and biomass dominated by Chironomidae and Oligochaeta on bare sediment, to high diversity and biomass characterized by plant-associated forms like snails and isopods in areas covered by macrovegetation. The mean size of perch (Perca fluviatilis L.) increased, probably as a result of higher availability of macroinvertebrates in the vegetation. The perch reached a mean size where the species is known to shift to a fish diet, permitting an increased top down effect on the ecosystem. The results support the idea that shallow eutrophic lakes can shift between two states, each one stabilized by feed-back mechanisms including both biotic and abiotic factors. Shifts between these states are suggested to be a possible explanation for observed drastic changes in abundance of waterfowl in shallow eutrophic lakes.     

Anthropogenic forcing leads to an abrupt shift to phytoplankton dominance in a shallow eutrophic lake

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Resuspension in a shallow eutrophic lake

The frequency and the importance of wind-induced resuspension were studied in the shallow, eutrophic Lake Arresø, Denmark (41 km², mean depth 3 m). During storm events in autumn 1988 lake water samples were collected every 2–8 hours by an automatic sampler at a mid-lake station. The concentration of suspended solids and Tot-P was found to increase markedly. During storms up to 2 cm of the superficial sediment was resuspended, and the concentration of resuspended solids in the water column rose to 140 mg l^–1. The resuspended particles had a relatively high settling velocity and on average, a relatively short residence time in the water column of 7 hours.A model which describes the concentration of resuspended solids as a function of wind velocity and of settling velocity of the resuspended particles is presented. Using additional wind velocity data from a nearby meteorological station, the model has been used to calculate the frequency of resuspension events and concentration of resuspended solids for the period from May to November 1988.These calculations show that resuspension occurred about 50% of the time. Average flux of suspended solids from the sediment to the water was 300 g m^–2 d^–1 and during 50% of the time lake water concentration of suspended solids was more than 32 mg l^–1. A relationship between concentration of suspended solids and Secchi-depth is presented. Because of resuspension, Secchi-depth in Lake Arresø is reduced to 0.5 m.Resuspension also had a marked effect on Tot-P concentration in the lake water, and P input to the lake water being totally dominated by resuspension events.     

Mechanisms regulating abundance of submerged vegetation in shallow eutrophic lakes

Shallow eutrophic lakes tend to be either in a turbid state dominated by phytoplankton or in a clear-water state dominated by submerged macrovegetation. Recent studies suggest that the low water turbidity in the clear-water state is maintained through direct and indirect effects of the submerged vegetation. This study examined what mechanisms may cause a recession of the submerged vegetation in the clear-water state, and thereby a switch to the turbid state. The spatial distribution of submerged vegetation biomass was investigated in two shallow eutrophic lakes in the clear-water state in southern Sweden. Biomass of submerged vegetation was positively correlated with water depth and wave exposure, which also were mutually correlated, suggesting that mechanisms hampering submerged vegetation were strongest at shallow and/or sheltered locations. The growth of Myriophyllum spicatum, planted in the same substrate and at the same water depth, was compared between sheltered and wave exposed sites in two lakes. After 6 weeks the plants were significantly smaller at the sheltered sites, where periphyton production was about 5 times higher than at the exposed sites. Exclosure experiments were conducted to evaluate the effects of waterfowl grazing on macrophyte biomass. Potamogeton pectinatus growth was decreased by grazing, whereas M. spicatum was not affected. The effects were greater at a sheltered than at a wave-exposed site, and also negatively related to distance from the reed belt. These results suggest that competition from epiphytes and waterfowl grazing hamper the development of submerged vegetation at sheltered and/or shallow locations. An increased strength of these mechanisms may cause a recession of submerged vegetation in shallow eutrophic lakes in the clear-water state and thereby a switch to the turbid state. Received: 24 June 1996 / Accepted: 8 September 1996     

Major changes in CO<Subscript>2</Subscript> efflux when shallow lakes shift from a turbid to a clear water state

Lakes can be sources or sinks of carbon, depending on local conditions. Recent studies have shown that the CO₂ efflux increases when lakes recover from eutrophication, mainly as a result of a reduction in phytoplankton biomass, leading to less uptake of CO₂ by producers. We hypothesised that lake restoration by removal of coarse fish (biomanipulation) or invasion of mussels would have a similar effect. We studied 14–22 year time series of five temperate Danish lakes and found profound effects on the calculated CO₂ efflux of major shifts in ecosystem structure. In two lakes, where limited colonisation of submerged macrophytes occurred after biomanipulation or invasion of zebra mussels (Dreissena polymorpha), the efflux increased significantly with decreasing phytoplankton chlorophyll a. In three lakes with major interannual variation in macrophyte abundance, the efflux declined with increasing macrophyte abundance in two of the lakes, while no relation to macrophytes or chlorophyll a was found in the third lake, likely due to high groundwater input to this lake. We conclude that clearing water through invasive mussels or lake restoration by biomanipulation may increase the CO₂ efflux from lakes. However, if submerged macrophytes establish and form dense beds, the CO₂ efflux may decline again.     

Temporal dynamics in epipelic, pelagic and epiphytic algal production in a clear and a turbid shallow lake

SUMMARY 1. Pelagic and epipelic microalgal production were measured over a year in a pre-defined area (depth 0.5 m) in each of two lakes, one turbid and one with clear water. Further estimates of epiphytic production within reed stands were obtained by measuring production of periphyton developed on artificial substrata.
2. Total annual production of phytoplankton and epipelon was 34% greater in the turbid lake (190 g C m⁻² year⁻¹) than in the clearwater lake (141 g C m⁻² year⁻¹). However, the ratio of total production to mean water column TP concentration was two fold greater in the clearwater lake.
3. Phytoplankton accounted for the majority of the annual production (96%) in the turbid lake, while epipelic microalgal production dominated (77%) in the clear lake. The relative contribution of epipelic algae varied over the year, however, and in the turbid lake was higher in winter (11–25%), when the water was relatively clear, than during summer (0.7–1.7%), when the water was more turbid. In the clearwater lake, the relative contribution of epipelon was high both in winter, when the water was most clear, and in mid-summer, when phytoplankton production was constrained either by nutrients or grazing.
4. Compared with pelagic and epipelic primary production, epiphytic production within a reed stand was low and did not vary significantly between the lakes.
5. The study supports the theory of a competitive and compensatory trade-off between primary producers in lakes with contrasting nutrient concentrations, resulting in relatively small differences in overall production between clear and turbid lakes when integrating over the season and over different habitats.     

Periphyton-macroinvertebrate interactions in light and fish manipulated enclosures in a clear and a turbid shallow lake

In a clear and a turbid freshwater lake the biomasses of phytoplankton, periphytic algae and periphytonassociated macrograzers were followed in enclosures with and without fish (Rutilus rutilus) and four light levels (100%, 55%, 7% and < 1% of incoming light), respectively. Fish and light affected the biomass of primary producers and the benthic grazers in both lakes. The biomass of primary producers was generally higher in the turbid than the clear lake, and in both lakes fish positively affected the biomass, while shading reduced it. Total biomass of benthic grazing invertebrates was higher in the clear than in the turbid lake and the lakes were dominated by snails and chironomids + ostracods, respectively. While light had no effect on the biomass of grazers in the clear lake, snail breeding was delayed in the most shaded enclosures and presence of fish reduced the number of snails and the total biomass of grazers. In the turbid lake ostracod abundance was not influenced by light, but was higher in fish-free enclosures. Density of chironomids correlated positively with periphyton biomass in summer, while fish had no effect. Generally, light-mediated regulation of primary producers was stronger in the turbid than in the clear lake, but the regulation did not nambiguously influence the primary consumers. However, regulation by fish of the benthic grazer community was stronger in the clear than in the turbid lake, and in both lakes strong top-down effects on periphyton were seen. The results indicate that if present-day climate in Denmark in the future is found in coastal areas at higher latitudes, the effect of lower light during winter in such areas will be highest in clear lakes, with typically lower fish biomass and higher invertebrate grazer density.     

The structuring role of free-floating versus submerged plants in a subtropical shallow lake

In shallow temperate lakes many ecological processes depend on submerged macrophytes. In subtropical and tropical lakes, free-floating macrophytes may be equally or more important. We tested the hypothesis that different macrophyte growth forms would be linked with different bottom-up and top-down mechanisms in out-competing phytoplankton. We compared experimentally the effects of submerged and free-floating plants on water chemistry, phytoplankton biomass, zooplankton and fish community structure in a shallow hypertrophic lake (Lake Rodó, 34°55S 56°10W, Uruguay). Except for the retention of suspended solids, we found no other significant bottom-up process connected with either Eichhornia crassipes or Potamogeton pectinatus. Free-floating plants had a lower abundance of medium-sized zooplankton than any other microhabitat and submerged plants were apparently preferred by microcrustaceans. Fish showed a differential habitat use according to species, size-class and feeding habits. Dominant omnivore-planktivores, particularly the smallest size classes, preferred submerged plants. In contrast, omnivore-piscivores were significantly associated with free-floating plants. The density of omnivorous-planktivorous fish, by size class, significantly explained the distribution of medium-sized zooplankton, the high number of size 0 fish being the main factor. The abiotic environment and the structure of the zooplankton community explained little of the fish distribution pattern. Our results suggest that bottom-up effects of free-floating plants are weak when cover is low or intermediate. Top-down effects are complex, as effects on zooplankton and fish communities seem contradictory. The low piscivores:planktivores ratio in all microhabitats suggests, however, that cascading effects on phytoplankton through free-floating plant impacts on piscivorous fish are unlikely to be strong.     

Alternation between clear,high-vegetation and turbid,low-vegetation states in a shallow lake: the role of birds

External phosphorus load to a wetland with two shallow lakes in the Botshol Nature Reserve, the Netherlands, was reduced since 1989, resulting in a rapid reduction of phosphorus levels, phytoplankton biomass and turbidity, and after 4 years, explosive growth of Characeae. The clear water state was unstable, however, and the ecosystem subsequently alternated between clear, high-vegetation and turbid, low-vegetation states. The switch from clear to turbid states occurred at a higher phosphorus level than the switch from turbid to clear states and area covered by macrophytes was significantly correlated to Secchi disc depth (r = 0.86, p < 0.001). Beginning in 1997, phosphorus input from droppings of greylag geese and black-headed gulls increased. The hypothesis that grazing prevented the return of Characeae populations was tested during 1996–1997 using large-scale exclosure experiments. The biomass and cover of Characeae were monitored in 17 exclosures for 2 years. The experiments showed no significant increase in Characeae in the absence of grazers compared with the controls. During the course of the experiments, the entire lake switched from turbid water to clear water and high Chara biomass. These ecosystem developments suggest that light limitation was the main factor controlling the collapse and return of Characeae in Botshol.     

Existence of a macrophyte-dominated clear water state over a very wide range of nutrient concentrations in a small shallow lake

Little Mere, a small shallow lake, has been monitored for four years, since its main source of nutrients (sewage effluent) was diverted. The lake has provided strong evidence for the persistence of a clear water state over a wide range of nutrient concentrations. It had clear water at extremely high nutrient concentrations prior to effluent diversion, associated with high densities of the large body-sized grazer, Daphnia magna, associated with low fish densities and fish predation. Following sewage effluent diversion in 1991, the nutrient concentrations significantly declined, the oxygen concentrations rose, and fish predation increased. The dominance of large body-sized grazers shifted to one of relatively smaller body-sized animals but the clear water state has been maintained. This is probably due to provision of refuges for grazers by large nymphaeid stands (also found prior to diversion). There has been a continued decrease in nutrient concentrations and expansion of the total macrophyte coverage, largely by submerged plants, following effluent diversion. The grazer community of Little Mere has also responded to this latter change with a decline in daphnids and increase in densities of weed-associated grazers. The presence of large densities of such open water grazers was the apparent main buffer mechanisms of the clear water state until 1994. The lake has, so far, maintained its clear water in the absence of such grazers. Thus, new buffer mechanisms appear to operate to stabilize the ecosystem. Little Mere appears to have shifted from previous top-down controlled clear water state to a bottom-up controlled clear water state.     

Modelling nutrient cycles in relation to food web structure in a biomanipulated shallow lake

The modelPCLAKE describes the phosphorus and nitrogen cycles within a shallow lake ecosystem, including the sediment and a simplified biological food web. All components are modelled in a generalized way rather than a very detailed one. This model has been applied to Lake Zwemlust, a small biomanipulated lake in The Netherlands. Formerly, this highly eutrophic lake was dominated by cyanobacteria and devoid of macrophytes. Biomanipulation was carried out in 1987 by pumping-out of the water, removal of all fish, and refilling of the lake with seepage water. The lake was restocked with some rudd, pike, zooplankton and seedlings of macrophytes, and then monitored up to 1992. Macrophytes developed rather quickly and reached their maximum biomass during the six-years period in 1989. Despite the continuously high nutrient (N and P) loading, algal biomass remained low due to nitrogen limitation, caused by competition with the macrophytes. From 1990 onwards, the macrophytes declined again and a species shift occurred, following an increase of herbivorous birds on the lake and the development of herbivorous fishes.Model simulations grossly reproduced the observed developments in Lake Zwemlust before and after the biomanipulation measures. The existence of multiple steady states at the same trophic state and the possible shift between them could be simulated well. This study also demonstrates the interrelation between system structure and the distribution and cycling of nutrients. It is concluded, that within general boundary conditions set by the trophic state of the system, the food web structure determines the actual nutrient flows and the occurrence of nutrient limitations of the primary producers. It is shown that both aspects can be integrated in one mathematical model. The long-term stability of the macrophyte dominance in the lake is discussed.     

Mineralization of dissolved organic phosphorus from a shallow eutrophic lake

Release of soluble reactive phosphorus (SRP) from dissolved organic phosphorus (DOP), concentrated by reverse osmosis of water samples from Lough Neagh Northern Ireland, was measured in the presence of enzymes and cultures of lake water bacteria in a basal liquid medium adjusted to the pH of lake water (7.6). No hydrolysis of unfractionated DOP was observed in the presence of alkaline phosphatase but a combination of alkaline phosphatase and phosphodiesterase mineralized 14% of DOP in a 30 day incubation period at 15 °C. A similar amount of mineralization was attained by phytase. Phytase induced the same degree of mineralization in a range of DOP fractions varying from MW > 100 000 to c. 500. A mixed culture of lake water bacteria mineralized 12% of unfractionated DOP. Single cultures of lake water bacteria displayed low mineralizing activity (mean of 49 cultures = 5% DOP hydrolysed). Results indicate that DOP from Lough Neagh in the above molecular weight range is predominantly recalcitrant to bacterial mineralization under natural lake conditions.     

Response of a eutrophic, shallow subtropical lake to reduced nutrient loading

1. Lake Apopka (FL, U.S.A.) was subjected to decades of high nutrient loading from farms developed in the 1940s on converted riparian wetlands. Consequences included perennially high densities of cyanobacteria, low water transparency, elimination of submerged vegetation, modified fish community, and deposition of nutrient‐rich, flocculent sediments. 2. Initial steps were taken to reduce phosphorus (P) loading. Through strengthened regulation and purchase of farms for restoration, external P loading was reduced on average from 0.56 to 0.25 g P m^?2 year^?1 (55%) starting in 1993. The P loading target for the lake is 0.13 g P m^?2 year^?1. 3. For the first 6 years of P loading reduction the annual sedimentation coefficient (σ) averaged 13% less than the prior long‐term value (0.97 versus 1.11 year^?1). The sedimentation coefficient, σ, was lower in the last 3 years of the study, but this period included extreme low‐water conditions and may not be representative. Annual σ was negative (net P flux to the water column) only 1 year. 4. Wind velocity explained 43% of the variation in σ during the period before reductions in total phosphorus (TP) concentration of lake water, but this proportion dropped to 6% after TP reductions. 5. Annual mean TP concentrations differed considerably from values predicted from external loading and hydraulic retention time using the Vollenweider–Organization for Economic Co‐operation and Development relationship. Reductions in lake water TP concentration fit model predictions better when multiyear (3‐year) mean values were used. 6. Evidence available to date indicates that this shallow, eutrophic lake responded to the decrease in external P loading. Neither recycling of sediment P nor wind‐driven resuspension of sediments prevented improvements in water quality. Reductions in TP concentration were evident about two TP‐resident times (2 × 0.9 year) after programmes began to reduce P loading. Improvements in concentrations of chlorophyll a and total suspended solids as well as in Secchi transparency lagged changes in lake‐water TP concentration but reached similar magnitudes during the study.     

Fish and nutrient enrichment effects on rotifers in a Mediterranean shallow lake: a mesocosm experiment

A mesocosm experiment was conducted “in situ” in a Chara dominated shallow lake near Valencia (Spain) to study top–down and bottom–up effects on rotifers by means of nutrient and fish additions. Both processes were important in determining rotifer abundance, biomass and diversity. A total of 36 mesocoms were established with triplicate treatment combinations of three fish levels (from no fish to 45 individuals of Gambusia holbrooki males) and four nutrient enrichment levels (from no additions to 10 mg l⁻¹ nitrate-N and 1 mg l⁻¹ phosphate-P). The main effect was a notable increase of planktonic and plant associated rotifers densities with fish. Rotifers benefited from mosquitofish predation on microcrustaceans and chironomids. The results showed a marked negative relationship between rotifer and cyclopoid abundances, indicating the importance of the predatory pressure of cyclopoids on rotifers. Effects on rotifer diversity were also evident, in general rotifer diversity decreased with nutrients and increased with fish. The effects of nutrients analysed at species level showed two contrasting density responses: an increase or a decrease with nutrients, which levelled off at high nutrient concentrations. High-level nutrient additions (from 5 mg l⁻¹ nitrate-N and 0.5 mg l⁻¹ phosphate-P) induced a switch to a turbid state with macrophyte disappearance. Most planktonic rotifer species, as well as plant associated ones, diminished when the turbid state was well established, especially in the mesocosms without fish. In the turbid mesocosms, relative abundance of plant-associated rotifers (as a whole) was higher than that of planktonic rotifers. The changes in rotifer species composition after the switch from a clear to a turbid water state are also described. Species of the genus Anuraeopsis, Trichocerca and Hexarthra, dominant in the clear water state, practically disappeared in the turbid water state, in which Proalides tentaculatus and Lecane nana were the main species. Guest editors: S. S. S. Sarma, R. D. Gulati, R. L. Wallace, S. Nandini, H. J. Dumont & R. Rico-Martínez Advances in Rotifer Research     

Abrupt community change on a rocky shore – biological mechanisms contributing to the potential formation of an alternative state

The 1997/1998 El Niño initiated a major shift in the intertidal assemblage on the Washington State outer coast. A 25 year time series (1978–2003) shows stands of dominant canopy algae replaced by mussel beds. A prior experiment had indicated that mussels can become too large to be eaten by starfish; newly initiated starfish removals predict mussel attainment of a size refuge. Such escapes inhibit recovery towards prior community composition and enhance development of alternative community states which may persist long after the originating forcing has lessened or disappeared.     

Restoring lakes by using artificial plant beds: habitat selection of zooplankton in a clear and a turbid shallow lake

1. Return of large‐bodied zooplankton populations is of key importance for creating a shift from a turbid to a clear‐water state in shallow lakes after a nutrient loading reduction. In temperate lakes, recovery is promoted by submerged macrophytes which function as a daytime refuge for large zooplankton. However, recovery of macrophytes is often delayed and use of artificial plant beds (APB) has been suggested as a tool to enhance zooplankton refuges, thereby reinforcing the shift to a clear‐water state and, eventually, colonisation of natural plants. 2. To further evaluate the potential of APB in lake restoration, we followed the day–night habitat choices of zooplankton throughout summer in a clear and a turbid lake. Observations were made in the pelagic and littoral zones and in APB in the littoral representing three different plant densities (coverage 0%, 40% and 80%). 3. In the clear lake, the zooplankton (primarily Daphnia) were mainly found in the pelagic area in spring, but from mid‐May they were particularly abundant in the APB and almost exclusively so in mid‐June and July, where they appeared in extremely high densities during day (up to 2600 ind. L⁻¹). During night Daphnia densities were overall more equally distributed between the five habitats. Ceriodaphnia was proportionally more abundant in the APB during most of the season. Cyclopoids were more abundant in the high APB during day but were equally distributed between the five habitats during night. 4. In the turbid lake, however, no clear aggregation was observed in the APB for either of the pelagic genera (Daphnia and Bosmina). This may reflect a higher refuge effect in the open water due to the higher turbidity, reduced ability to orient to plant beds and a significantly higher fish density (mainly of roach, Rutilus rutilus, and perch, Perca fluviatilis) in the plant beds than in the clear lake. Chydorus was found in much higher proportions among the plants, while cyclopoids, particularly the pelagic Cyclops vicinus, dominated in the pelagic during day and in the pelagic and high density plants during night. 5. Our results suggest that water clarity is decisive for the habitat choice of large‐bodied zooplankton and that introduction of APB as a restoration measure to enhance zooplankton survival is only a useful tool when water clarity increases following loading reduction. Our results indicate that dense APB will be the most efficient.