Introgressive hybridization in fishes: the biochemical evidence

Biochemical methods can detect variation at individual genetic loci, making possible the direct assessment of natural hybridization and introgression between fish populations. Protein electro-phoresis has been used to confirm and extend knowledge of many situations where species hybrids have been detected by morphological analyses. New cases of natural hybridization, including some at the subspecies level, have also been identified. Biochemical studies have provided the first conclusive evidence of natural post F₁ hybrids and of introgression between fish taxa. The strongest cases for introgression have used a combined analysis of nuclear protein genes and taxaspecific maternally inherited mitochondrial DNA variation. Information on the significance of introgression as a source of gene flow between taxa, particularly below the species level where sympatric subspecies and sibling species are involved, should expand in the future as the numbers and types of nuclear and mitochondrial DNA loci which can be assayed for variation increase. The full importance of introgressive hybridization in speciation may then be understood.     

Functional diversity in the color vision of cichlid fishes

Background  

Color vision plays a critical role in visual behavior. An animal's capacity for color vision rests on the presence of differentially sensitive cone photoreceptors. Spectral sensitivity is a measure of the visual responsiveness of these cones at different light wavelengths. Four classes of cone pigments have been identified in vertebrates, but in teleost fishes, opsin genes have undergone gene duplication events and thus can produce a larger number of spectrally distinct cone pigments. In this study, we examine the question of large-scale variation in color vision with respect to individual, sex and species that may result from differential expression of cone pigments. Cichlid fishes are an excellent model system for examining variation in spectral sensitivity because they have seven distinct cone opsin genes that are differentially expressed.     

Differences in aggressive behavior between convict cichlid color morphs: amelanistic convicts lose even with a size advantage

Convict cichlids (Archocentrus nigrofasciatus) are a territorial, monogamous, and biparental Central American cichlid fish. Convicts exist in two common color morphs: the wild-type (WT) black-barred form and an amelanistic (AM) barless morph. Color morphs affect aggressive interactions in other species of fish. We staged fights between males of each color morph with varying size asymmetries and found that WT males were able to overcome a size disadvantage by increasing their rate of aggressive behavior. AM males lost more often when smaller than their opponent, apparently because they did not increase their rate of aggressive behavior when at a size disadvantage. We discuss two possible hypotheses to explain these findings: (1) that there are genetic differences in aggressive behavior between the morphs and (2) that AM fish are disadvantaged in staged contests because they are unable to signal via changes in bar coloration.     

Different degrees of lunar synchronization of ovary development between two morphs of a Tanganyikan cichlid fish

The degree of lunar synchronization of spawning is thought to be related to a strategy that decreases predation on the brood in Tanganyikan substrate-brooding cichlids. Here, I examined the periodic change of ovary development in two morphs of Telmatochromis temporalis: the normal morph uses burrows under stones as spawning nests, whereas the dwarf morph uses holes within empty snail shells. The normal morph showed a significant lunar synchronization of ovary development, but the dwarf morph did not. In the normal morph, spawning prior to the full moon probably decreases the incidence of approaching brood predators and increases the guarding efficiency of parents. In the dwarf morph, however, lunar cyclic spawning may be dispensable, because the spawning nests within shells are probably highly effective for predator avoidance. These two morphs are closely related, and then will be a good model to clarify the widely observed phenomenon of lunar cyclic spawning.     

Introgressive hybridization facilitates adaptive divergence in a recent radiation of monkeyflowers

A primary goal in evolutionary biology is to identify the historical events that have facilitated the origin and spread of adaptations. When these adaptations also lead to reproductive isolation, we can learn about the evolutionary mechanisms contributing to speciation. We reveal the complex history of the gene MaMyb2 in shaping flower colour divergence within a recent radiation of monkeyflowers. In the Mimulus aurantiacus species complex, red-flowered M. a. ssp. puniceus and yellow-flowered M. a. ssp. australis are partially isolated because of differences in pollinator preferences. Phylogenetic analyses based on genome-wide variation across the complex suggest two origins of red flowers from a yellow-flowered ancestor: one in M. a. ssp. puniceus and one in M. a. ssp. flemingii. However, in both cases, red flowers are caused by cis-regulatory mutations in the gene MaMyb2. Although this could be due to distinct mutations in each lineage, we show that the red allele in M. a. ssp. puniceus did not evolve de novo or exist as standing variation in its yellow-flowered ancestor. Rather, our results suggest that a single red MaMyb2 allele evolved during the radiation of M. aurantiacus that was subsequently transferred to the yellow-flowered ancestor of M. a. ssp. puniceus via introgressive hybridization. Because gene flow is still possible among taxa, we conclude that introgressive hybridization can be a potent driver of adaptation at the early stages of divergence that can contribute to the origins of biodiversity.     

Introgressive hybridization between two Iberian endemic cyprinid fish: a comparison between two independent hybrid zones

Pseudochondrostoma duriense and Achondrostoma oligolepis are two Iberian endemic cyprinid fish species that occur in sympatry over most of their distribution range and that are suspected to hybridize in nature. Here, we employed a combination of mitochondrial and microsatellite markers to explore the extent of introgressive hybridization between these fishes. Two natural hybrid zones were identified in different river basins. Introgression was bi‐directional and both hybrid zones consisted mostly of parental genotypes/phenotypes (i.e. bimodal hybrid zones). Yet, they appeared to differ in the extent and direction of introgression, which supports the view that they constitute independent outcomes of different hybridization processes probably influenced by environmental features. Several discordances were found between mtDNA and microsatellite results, suggesting that this hybridization process has complex consequences and illustrating the importance of using independent markers to define accurately the hybrid status of individuals in the presence of high levels of backcrossing.     

Variable discrimination and asymmetric preferences in laboratory tests of reproductive isolation between cichlid colour morphs

Mating behaviour affects reproductive isolation and phenotypic differentiation. In Lake Tanganyika, the cichlid fish Tropheus moorii diversified into numerous, currently allopatric colour variants. Allopatric isolation is periodically interrupted by dispersal and secondary contact during lake level fluctuations, making long‐term differentiation partly dependent on assortative mating. Laboratory experiments with two moderately distinct morphs revealed assortative female preferences in one (Nakaku), but random mate choice in the other morph (Mbita). No discrimination was apparent between two subtly differentiated morphs (Chimba and Moliro). Tested against each other in a previous study, the highly distinct Moliro and Nakaku exhibited strong assortative preferences. The correlation between colour pattern similarity and mate discrimination suggests that allopatry and philopatric behaviour are less crucial for the maintenance of differentiation between highly distinct morphs than for more similar morphs. Interestingly, the asymmetric isolation in one pair of morphs is congruent with a pattern of unidirectional mitochondrial introgression between populations.     

Adaptive sequence evolution in a color gene involved in the formation of the characteristic egg-dummies of male haplochromine cichlid fishes

Background  

The exceptionally diverse species flocks of cichlid fishes in East Africa are prime examples of parallel adaptive radiations. About 80% of East Africa's more than 1 800 endemic cichlid species, and all species of the flocks of Lakes Victoria and Malawi, belong to a particularly rapidly evolving lineage, the haplochromines. One characteristic feature of the haplochromines is their possession of egg-dummies on the males' anal fins. These egg-spots mimic real eggs and play an important role in the mating system of these maternal mouthbrooding fish.     

Interspecific profiling of gene expression informed by comparative genomic hybridization: A review and a novel approach in African cichlid fishes

Modern genomic approaches have facilitated great progress in our understanding of the molecular and genetic underpinnings of ecological and evolutionary processes. Analysis of gene expression through heterologous hybridization in particular has enabled genome-scale studies in many ecologically and evolutionarily interesting species. However, these studies have been hampered by the difficulty of comparing-on a common array platform-gene-expression profiles across species due to sequence divergence altering the dynamics of hybridization. All too often, comparisons of expression profiles across species were limited to contrasting lists of gene or even of just functional categories. Here we review these issues and propose a novel solution. Exploiting the diverse cichlid lineages of East Africa as our model-system, we then present results from an experimental case study that compares the neural gene-expression profiles of males and females of two species that differ in mating system. Using a single microarray platform that contains genes from one species, Astatotilapia burtoni, we conducted a total of 16 direct comparisons for neural gene-expression level between individual males and females from a pair of sister species, the polygynous Enantiopus melanogenys and the monogamous Xenotilapia flavipinnis. Next, we conducted a meta-analysis with previously published data from two different intra-specific expression studies to determine whether sex-specific neural gene expression is more closely associated with behavioral phenotype than it is with gonadal sex. Our results indicate that the gene expression profiles are species-specific to a large extent, as relatively few genes show conserved expression patterns associated with either sex. Finally, we describe how competitive genomic DNA hybridizations between the two focal species allow us to assess the degree to which divergence of sequences biases the results. We propose a masking technique that correlates interspecific expression ratios obtained with cDNA with hybridization ratios obtained with genomic DNA for the same set of species and determines threshold sequence divergence to reduce false positives. Our approach should be applicable to a wide range of interesting questions related to the evolution and ecology of gene expression.     

Phylogenetic study of cichlid fishes in Lake Tanganyika: a lepidological approach

The phylogeny of the various cichlid lineages in Lake Tanganyika has been investigated applying scale morphology and squamation characters. The monophyly of the established tribes is assessed and evidence is given for their interrelationships as well as their phyletic position within the family Cichlidae.     

Color change and pigmentation in a color polymorphic cichlid fish

Hydrobiologia - In many haplochromine cichlids, body coloration is an important communication cue during social interactions. In some cichlids, individuals can change color, but we have little...     

Food resources of shrimp-eating cichlid fishes in Lake Tanganyika

Species, size composition, and diurnal variation in abundance of shrimp (Atyidae) were examined and compared with food habits of 14 species of shrimp-eating cichlids in Lake Tanganyika. In the daytime when the cichlids foraged actively, only one species of shrimp, Limnocaridina latipes, was present on rock surfaces. Eleven of the 14 species of shrimp-eaters examined preyed mainly on L. latipes; the shrimp-eaters foraging only on rock surfaces preyed exclusively on L. latipes, whereas shrimp-eaters also taking foods from the interstices between or under stones and debris preyed on various species of shrimp. Although three kinds of shrimp-eaters, each with a unique prey catching technique and preferred shrimp size, were recognized, all shrimp-eaters preyed on shrimp of greatly overlapping sizes. This fact confirms that partitioning of food resources takes place via different capturing techniques. Moreover, the utilization of the same food resource in a different manner may promote group foraging in some shrimp-eaters, because the shrimp is a suitable animal to hunt in groups and is a quickly renewable food of potential abundance.     

Introgressive hybridization between a native and an introduced species:Viola lutea subsp.Sudetica versusV. Tricolor

A hybrid swarm betweenViola lutea subsp.sudetica (2n=50, native species) andViola tricolor (2n=26, introduced species) originated in the 1970’s in the Krkono?e Mts. Analyses of chromosome numbers, reproductive biology, morphology, and ecology gave the following results: (1) Compared to the plants found in the 1970’s, the number of colour morphs have decreased and the types now prevailing in the field are morphologically closer toV. lutea subsp.sudetica, forming a continuum. (2) In the field, hybrids having approximately the same chromosome number as the primary hybrids are most common. Some plants of the hybrid swarm have certain characters unknown to their parents. (3) In the field, autogamous types similar toV. tricolor were found. (4) A limited number of plants from the field and culture have higher somatic chromosome numbers thanV. lutea subsp.sudetica; there was a tendency towards increasing chromosome numbers in their progeny (up to 2n=62). These plants have some new morphological characters (a small proportion of hexacolpate pollen) not found in the parents (nor in the other hybrids with prevailing tetracolpate and pentacolpate pollen grains) and higher pollen fertility in comparison to the other hybrids. These plants also have the highest germination rate. (5) There is a tendency for chromosome numbers to decline in the progeny of open pollinated hybrid plants in the lowland experimental graden. (6) The phenology of the plants in the mountain grasslands and the lowland garden is different; the parents behave in a totally contrasting manner. (7) In the field at least some hybrids extend outside the geographical and ecological ranges of the parental species, invading new communities. (8) Seeds ofV. tricolor do not show any dormancy and germinate in the year of production; most of theV. lutea subsp.sudetica seeds germinate during the spring of the following year. Hybrids with intermediate chromosome numbers had both types of germination strategy. The germination rate of intermediates with high chromosome numbers was even higher than that ofV. tricolor.     

Temporal diversification of Mesoamerican cichlid fishes across a major biogeographic boundary

The Mexican Neovolcanic Plateau sharply divides the vertebrate fauna of Mesoamerica where the climate of both the neotropics and temperate North America gradually blend. Only a few vertebrate groups such as the Heroine cichlids, distributed from South America to the Rio Grande in North America, are found both north and south of the Neovolcanic Plateau. To better understand the geography and temporal diversification of cichlids at this geologic boundary, we used mitochondrial DNA sequences of the cytochrome b (cyt b) gene to reconstruct the relationships of 52 of the approximately 80 species of Heroine cichlids in Mesoamerica. Our analysis suggests several cichlids in South America should be considered as part of the Mesoamerican Heroine clade because they and the cichlids north of the Isthmus of Panama are clearly supported as monophyletic with respect to all other Neotropical cichlids. We also recovered a group containing species in Paratheraps+Paraneetroplus+Vieja as the sister clade to Herichthys. Herichthys is the only cichlid clade north of the Mexican Plateau and it is monophyletic. Non-parametric rate smoothing of cichlid cyt b sequence resulted in an estimated divergence time of approximately 6 million years for Herichthys. This temporal diversification is concordant with divergence times estimated for anurans in the genus Bufo, a group that exhibits a similar geographic distribution. Our results indicate the 5-million-year-old extension of the Mexican Neovolcanic Plateau to the Gulf Coast of Mexico has strongly influenced the current transition between the vertebrate faunas of the Neotropics and Nearctic.     

Differences between inter- and intraspecific architectonic adaptations to pharyngeal mollusc crushing in cichlid fishes

Because fish heads are densely packed with muscles, ligaments, skeletal elements and other structures, transformations in one structure may influence surrounding structures. Transformations occur during phylogeny, ontogeny and as environmentally induced alterations, i.e. phenotypic plasticity. We describe differences in intra- and interspecific transformations of the pharyngeal jaw apparatus of haplochromine cichlids. Using multivariate clustering techniques we trace possible correlations in transformations of anatomical characters of the pharyngeal jaws and surrounding structures. The intraspecific transformation analysis is based on two environmentally induced morphs of Astatoreochromis alluaudi : a molluscivorous morph with a hypertrophied pharyngeal jaw apparatus and an insectivorous one with a non-hypertrophied apparatus. For the interspecific analysis five other haplochromine species from Lake Victoria with diets ranging from insects to molluscs were investigated. Although ranges in diet are the same, the anatomical ranges differ between A. alluaudi and the species cline. Besides similarities in anatomical changes of the pharyngeal jaw apparatus in the intra- and interspecific cline, differences were also observed. Apparently there are among haplochromines multiple pathways to achieve similar performance. In A. alluaudi architectonic and intrinsic plasticity constraints limit the adaptability of the pharyngeal jaw apparatus. In the species cline, these constraints have been overcome by genetical adaptation.     

Congruence between mitochondrial genes and color morphs in a coral reef fish: population variability in the Indo-Pacific damselfish Chrysiptera rex (Snyder, 1909)

The Pomacentrid fish Chrysiptera rex (Snyder 1909) is a small conspicuous member of Indo-Pacific coral reefs. Despite having planktonic larvae, which would seem to facilitate genetic and morphological homogeneity, it possesses three distinct color variations, which are geographically restricted. To investigate the presence of possible incipient speciation, samples were taken from three geographically distinct areas including the South China Sea, the Philippines and Indonesia. Phylogenetic analysis of these morphotypes resulted in congruence between color and genetic data sets, with separation by color type. Each of the color variants possessed a unique genetic signal at two mitochondrial loci, but the color variants were invariant across a nuclear gene. This study highlights the importance of range wide sampling when characterizing a species and argues that multiple lines of evidence should be used when evaluating the taxonomic and conservation status of coral reef organisms.     

Introgressive hybridization in two southern California species of Rhus (Anacardiaceae)

Five populations ofRhus integrifolia andR. ovata were studied and, based upon morphological characteristics and pollen viability, a number of putative hybrids were found in those areas where the two species are sympatric. Diagnostic characteristics most useful for distinguishing the species and their hybrids are leaf morphology, sepal pubescence, petiole length, and petal size. Introgression was evident in at least three populations, which suggested that hybridization between the two species is an ancient phenomenon. Evolutionarily, hybridization between the two taxa has probably been of little consequence.     

Reproductive isolation of sympatric morphs in a population of Darwin's finches

Recent research on speciation has identified a central role for ecological divergence, which can initiate speciation when (i) subsets of a species or population evolve to specialize on different ecological resources and (ii) the resulting phenotypic modes become reproductively isolated. Empirical evidence for these two processes working in conjunction, particularly during the early stages of divergence, has been limited. We recently described a population of the medium ground finch, Geospiza fortis, that features large and small beak morphs with relatively few intermediates. As in other Darwin's finches of the Galápagos Islands, these morphs presumably diverged in response to variation in local food availability and inter- or intraspecific competition. We here demonstrate that the two morphs show strong positive assortative pairing, a pattern that holds over three breeding seasons and during both dry and wet conditions. We also document restrictions on gene flow between the morphs, as revealed by genetic variation at 10 microsatellite loci. Our results provide strong support for the central role of ecology during the early stages of adaptive radiation.