Landscape of the hnRNP K protein-protein interactome

The heterogeneous nuclear ribonucleoprotein K is an ancient RNA/DNA-binding protein that is involved in multiple processes that compose gene expression. The pleiotropic action of K protein reflects its ability to interact with different classes of factors, interactions that are regulated by extracellular signals. We used affinity purification and MS to better define the repertoire of K protein partners. We identified a large number of new K protein partners, some typically found in subcellular compartments, such as plasma membrane, where K protein has not previously been seen. Electron microscopy showed K protein in the nucleus, cytoplasm, mitochondria, and in vicinity of plasma membrane. These observations greatly expanded the view of the landscape of K protein-protein interaction and provide new opportunities to explore signal transduction and gene expression in several subcellular compartments.     

MiR‐429 suppresses glioblastoma multiforme by targeting SOX2

Accumulating evidence has shown that miR‐429 plays an important role in the development and progression of tumour. However, the role of miR‐429 in glioblastoma multiforme (GBM) remains largely unknown. The present study is designed to investigate the function of miR‐429 in GBM and to explore the molecular mechanism underlying its function. The expression level of miR‐429 was detected in GBM tissues and cell lines by quantitative real‐time polymerase chain reaction. The effect of overexpression of miR‐429 on in vitro cell proliferation, apoptosis and invasion was examined. Western blot analysis was used to detect the influence of miR‐429 on the expression of target gene, and Pearson analysis was used to calculate the correlation between the expression of targets gene and the miR‐429 in GBM tissues. Our study shows that miR‐429 is downregulated in GBM tissues compared with noncancerous tissues (P < .01). In addition, the expression of miR‐429 in GBM cell lines is also significantly lower (P < .01). Enforced expression of miR‐429 inhibits GBM cells proliferation, induces apoptosis and suppresses invasion and leads to the downregulation of the SOX2 protein. Moreover, the expression level of miR‐429 in GBM tissues shows inverse relationship with the expression level of SOX2 protein. Our findings suggest that miR‐429 represents a potential tumour‐suppressive miRNA and plays an important role in GBM progression by directly targeting SOX2.     

The algal metabolite yessotoxin affects heterogeneous nuclear ribonucleoproteins in HepG2 cells

The dinoflagellate metabolite yessotoxin (YTX) is produced by several species of algae and accumulates in marine food chains, leading to concerns about possible affects on aquaculture industries and human health. In mice used for toxicity testing, YTX is lethal by the intraperitoneal route, but is considerably less toxic when orally administered. The mode of action of YTX and its potential effect on humans is unclear and we therefore conducted the first proteomic analysis of the effects of this compound. We used 2‐DE to examine protein changes in HepG2 cell cultures exposed to 1.4 μM YTX for 3, 12.5, 18 and 24 h. After selecting proteins that changed more than three‐fold after YTX exposure, 55 spots were deemed significantly affected by the toxin (p<0.05). Major groups of affected proteins include members from the heterogeneous nuclear ribonucleoprotein (hnRNP), lamin, cathepsin and heat shock protein families that often are associated with apoptosis. We therefore confirmed apoptosis using Annexin‐V‐FLUOS staining of phosphatidylserine exposed at the surface of apoptotic cells. Ingenuity pathways analysis also indicated effects on pathways involved in protein processing, cell cycling and cell death.     

Investigation of serum proteome alterations in human glioblastoma multiforme

Glioblastoma multiforme (GBM) or grade IV astrocytoma is the most common and lethal adult malignant brain tumor. The present study was conducted to investigate the alterations in the serum proteome in GBM patients compared to healthy controls. Comparative proteomic analysis was performed employing classical 2DE and 2D‐DIGE combined with MALDI TOF/TOF MS and results were further validated through Western blotting and immunoturbidimetric assay. Comparison of the serum proteome of GBM and healthy subjects revealed 55 differentially expressed and statistically significant (p <0.05) protein spots. Among the identified proteins, haptoglobin, plasminogen precursor, apolipoprotein A‐1 and M, and transthyretin are very significant due to their functional consequences in glioma tumor growth and migration, and could further be studied as glioma biomarkers and grade‐specific protein signatures. Analysis of the lipoprotein pattern indicated elevated serum levels of cholesterol, triacylglycerol, and low‐density lipoproteins in GBM patients. Functional pathway analysis was performed using multiple software including ingenuity pathway analysis (IPA), protein analysis through evolutionary relationships (PANTHER), database for annotation, visualization and integrated discovery (DAVID), and GeneSpring to investigate the biological context of the identified proteins, which revealed the association of candidate proteins in a few essential physiological pathways such as intrinsic prothrombin activation pathway, plasminogen activating cascade, coagulation system, glioma invasiveness signaling, and PI3K signaling in B lymphocytes. A subset of the differentially expressed proteins was applied to build statistical sample class prediction models for discrimination of GBM patients and healthy controls employing partial least squares discriminant analysis (PLS‐DA) and other machine learning methods such as support vector machine (SVM), Decision Tree and Naïve Bayes, and excellent discrimination between GBM and control groups was accomplished.     

Characterization of multiple alternative forms of heterogeneous nuclear ribonucleoprotein K by phosphate-affinity electrophoresis

The phosphorylation of heterogeneous nuclear ribonucleoprotein K (hnRNP K) is thought to play an important role in cell regulation and signal transduction. However, the relationship between hnRNP K phosphorylation and cellular events has only been indirectly examined, and the phosphorylated forms of endogenous hnRNP K have not been biochemically characterized in detail. In this study, we extensively examined the phosphorylated forms of endogenous hnRNP K by direct protein-chemical characterization using phosphate-affinity electrophoresis followed by immunoblotting and MS. Phosphate-affinity electrophoresis enabled us to sensitively detect and separate the phosphorylated forms of hnRNP K. When we used 2-DE with phosphate-affinity SDS-PAGE in the second dimension, the nuclear fraction contained more than 20 spots of endogenous hnRNP K on the 2-D map. We determined that the multiple forms of hnRNP K were produced mainly by alternative splicing of the single hnRNP K gene and phosphorylation of Ser116 and/or Ser284. Furthermore, the subcellular localization of these proteins revealed by the 2-D gel correlated with their phosphorylation states and alternative splicing patterns. The results also indicated that the multiple forms of hnRNP K were differentially modulated in response to external stimulation with bacterial lipopolysaccharide or serum.     

SOX2 modulates alternative splicing in transitional cell carcinoma

Aberrant alternative splicing of key cellular regulators may play a pivotal role in cancer development. To investigate the potential influence of altered alternative splicing on the development of transitional cell carcinoma (TCC), splicing activity in the TCC cell lines TSGH8301 and BFTC905 was examined using the SV40-immortalized uroepithelial cell line SV-HUC-1 as a reference. Our results indicate a significant alteration in splice site selection in the TCC cell lines. By gene expression profiling and subsequent validation, we discovered that sex-determining region Y-box protein 2 (SOX2) is specifically upregulated in BFTC905. Furthermore, ectopic expression of SOX2 modulates alternative splicing of the splicing reporter in vivo. More significantly, using an in vitro pull-down assay, it was found that SOX2 exhibits RNA-binding capability. Our observations suggest that SOX2 modulates alternative splicing by functioning as a splicing factor.     

FOXL2、SOX14及BPESC1 mRNA在小睑裂综合征患者眼睑组织中表达水平的研究

目的 研究小睑裂综合征（blephamphimosis—ptosis—epicanthusinversus syndrome,BPES）患者与正常人相比眼睑组织中FOX12、SOX14及BPESC13个基因mRNA的相对表达水平,探讨这3个基因与BPES的相关性,以及可能存在的发病机制。方法TRIzol法抽提眼睑组织总RNA,反转录为cDNA,应用实时荧光定量PCR技术分别检测15例BPES患者（A组）及15例正常人眼睑组织（B组）中FOXL2、SOX14和BPESClmRNA的表达水平,用两配对样本wilcoxon符号秩检验法和2-AAC,法分析两组数据及其差异。结果FOXL2、SOX14和BPESCI3个基因tuRNA的表达水平在A、B两组间的差异均具有统计学意义,P值均〈0．05。A、B两组间,FOXL2基因的△Ct之差（△△ct）,负秩与证秩的平均秩分别为6．00和8．50,SOX14基[天1的△△Ct负秩与正秩的平均秩分别为4．20和9．33,BPESC1基因的△△ct负秩与正秩的平均秩分别为8．23和6．50,可认为A组FOXL2基因和SOXl4基因的△ct值大于B组,BPESCI基因的△ct值小于B组,即A组的FOXL2基因和SOX14基因的表达水平低于B组,BPESCI基因表达水平高于B组。结论FOXL2、BPESC1及SOX14均与BPES具有一定相关性,FOXL2和SOX14的低表达以及BPESC1的高表达可能与BPES的发病相关。     

PVCL-MnO2纳米探针用于多形性胶质母细胞瘤的放疗增敏及MRI成像的实验研究

摘要 目的：探讨PVCL-MnO₂对多形性胶质母细胞瘤的放疗增敏作用,并进行体内MRI成像研究。方法：制备PVCL-MnO₂纳米探针,利用透射电子显微镜(Transmission Electron Microscope, TEM)对其形态进行表征,并使用Image J分析其尺寸分布。采用细胞增殖-毒性实验 (3-(4,5-Dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide, MTT),测定PVCL-MnO₂协同放疗处理肿瘤细胞48 h后的细胞活性。将多形性胶质母瘤细胞瘤细胞进行PVCL-MnO₂共孵育后,协同放疗处理,分别使用免疫荧光,蛋白质印迹法等实验技术检测H2AX 组蛋白异型的磷酸化形式 (phosphorylated form of the histone protein H2AX, γ-H2AX),活性氧自由基(reactive oxygen species, ROS) 的产生及Bax,Bcl-2凋亡相关蛋白的表达。PVCL-MnO₂尾静脉注射至原位多形性胶质母细胞瘤小鼠中,在不同的时间点进行MRI扫描,观察成像效果。结果：PVCL-MnO₂颗粒粒径分布均匀,结构规整, 表现出良好的单分散性。PVCL-MnO₂联合放疗可有效增强DNA双链的断裂,ROS及促凋亡蛋白Bax的产生,同时下调了抗凋亡蛋白Bcl-2。MRI成像显示,PVCL-MnO₂具有较好的T1-加权MRI成像效果,在尾静脉注射PVCL-MnO₂ 后4 h,肿瘤部位的信号增强最明显, 随后信号开始下降。结论：PVCL-MnO₂可实现多形性胶质母细胞瘤的放疗增敏及MRI成像。     

食管鳞状细胞癌中SOX2和Slug的表达及与肿瘤出芽之间的关系

目的探讨食管鳞状细胞癌中SOX2、Slug的表达与临床病理参数的关系及两者表达与肿瘤出芽的关系。方法应用免疫组织化学染色方法检测89例食管鳞状细胞癌及癌旁组织中SOX2、Slug的表达及计算食管鳞状细胞癌病例HE切片中肿瘤出芽的数量。分析SOX2、Slug的表达在ESCC侵袭和转移中的临床病理学意义。结果食管鳞状细胞癌中SOX2、Slug的表达率分别为53.93%和68.53%,明显高于癌旁组织SOX2和Slug表达率(31.46%和31.46%);癌组织中肿瘤出芽率为39.32%。SOX2高表达与食管鳞状细胞癌的浸润深度、淋巴结转移及高临床分期有关,Slug高表达与食管鳞状细胞癌的分化程度、浸润深度、淋巴结转移及高临床分期有关。肿瘤出芽发生率与食管鳞状细胞癌的分化程度、浸润深度、淋巴结转移及高临床分期有关。Spearman相关性分析表明,食管鳞状细胞癌组织中SOX2表达与Slug表达呈显著正相关,Slug表达与肿瘤出芽明显呈正相关。结论SOX2的高表达可能通过上调Slug的表达从而促进肿瘤的出芽,在食管鳞状细胞癌的侵袭及转移过程中发挥重要作用。     

Epigenetic repression of microRNA-129-2 leads to overexpression of SOX4 in gastric cancer

High levels of SOX4 expression have been found in a variety of human cancers, such as lung, brain and breast cancers. However, the expression of SOX4 in gastric tissues remains unknown. The SOX4 expression was detected using immunohistochemical staining and semi-quantitative RT-PCR, and our results showed that SOX4 was up-regulated in gastric cancer compared to benign gastric tissues. To further elucidate the molecular mechanisms underlying up-regulation of SOX4 in gastric cancers, we analyzed the expression of microRNA-129-2 (miR-129-2) gene, the epigenetic repression of which leads to overexpression of SOX4 in endometrial cancer. We found that up-regulation of SOX4 was inversely associated with the epigenetic silencing of miR-129-2 in gastric cancer, and restoration of miR-129-2 down-regulated SOX4 expression. We also found that inactivation of SOX4 by siRNA and restoration of miR-129-2 induced apoptosis in gastric cancer cells.     

The SARS-CoV-2 RNA interactome

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Reprogramming of non-genomic estrogen signaling by the stemness factor SOX2 enhances the tumor-initiating capacity of breast cancer cells

The restoration of pluripotency circuits by the reactivation of endogenous stemness factors, such as SOX2, may provide a new paradigm in cancer development. The tumoral stem cell reprogramming hypothesis, i.e., the ability of stemness factors to redirect normal and differentiated tumor cells toward a less-differentiated and stem-like state, adds new layers of complexity to cancer biology, because the effects of such reprogramming may remain dormant until engaged later in response to (epi)genetic and/or (micro)environmental events. To test this hypothesis, we utilized an in vitro model of a SOX2-overexpressing cancer stem cell (CSC)-like cellular state that was recently developed in our laboratory by employing Yamanaka’s nuclear reprogramming technology in the estrogen receptor α (ERα)-positive MCF-7 breast cancer cell line. Despite the acquisition of distinct molecular features that were compatible with a breast CSC-like cellular state, such as strong aldehyde dehydrogenase activity, as detected by ALDEFLUOR, and overexpression of the SSEA-4 and CD44 breast CSC markers, the tumor growth-initiating ability of SOX2-overexpressing CSC-like MCF-7 cells solely occurred in female nude mice supplemented with estradiol when compared with MCF-7 parental cells. Ser118 phosphorylation of estrogen receptor α (ERα), which is a pivotal integrator of the genomic and nongenomic E₂/ERα signaling pathways, drastically accumulated in nuclear speckles in the interphase nuclei of SOX2-driven CSC-like cell populations. Moreover, SOX2-positive CSC-like cells accumulated significantly higher numbers of actively dividing cells, and the highest levels of phospho-Ser118-ERα occurred when chromosomes lined up on a metaphase plate. The previously unrecognized link between E₂/ERα signaling and SOX2-driven stem cell circuitry may significantly impact our current understanding of breast cancer initiation and progression, i.e., SOX2 can promote non-genomic E₂ signaling that leads to nuclear phospho-Ser118-ERα, which ultimately exacerbates genomic ER signaling in response to E₂. Because E₂ stimulation has been recently shown to enhance breast tumor-initiating cell survival by downregulating miR-140, which targets SOX2, the establishment of a bidirectional cross-talk interaction between the stem cell self-renewal regulator, SOX2, and the local and systemic ability of E₂ to increase breast CSC activity may have profound implications for the development of new CSC-directed strategies for breast cancer prevention and therapy.