Frequency of occurrence of mangrove fungi from the east coast of India

This paper describes the frequency of occurrence and biodiversity of fungi from mangroves of the Godavari and Krishna deltas, on the east coast of India. Seventy three species were identified from Godavari and 67 from the Krishna mangroves. Fifty five species were common to both sites, 18 were found only at Godavari and 12 at Krishna mangroves. Verruculina enaliawas found to be very frequent at both sites with a higher frequency of occurrence at Godavari. Eutypa bathurstensis was very frequent at Godavari but only frequent at Krishna. Cirrenalia pygmea and Cryptosphaeria mangrovei were frequent at the Godavari mangrove, but were recorded occasionally at Krishna. Decaying samples of Rhizophora and Avicennia were studied in detail. Forty three species were common to both hosts, while 22 species were recorded only from Avicennia and 20 only from Rhizophora. Verruculina enalia was the only very frequent fungus recorded on both hosts with a lower percentage occurrence (14.8%) on R. apiculata as compared to Avicennia spp. (24.3%). Eutypa bathurstensis was the next most frequent fungus on Avicennia, while Rhizophila marina was next most frequent on Rhizophora. Dactylospora haliotrepha which was recorded frequently on Rhizophorawas infrequent on Avicennia.     

小蓬NeMT2基因的克隆及其植物表达载体的构建

该研究利用RACE ( Rapid amplification of cDNA ends)技术从小蓬中成功分离编码金属硫蛋白( Metal-lothionein,MT)的cDNA序列,命名为NeMT2,在GenBank中登录号为KT835290。该基因全长590 bp,开放阅读框为237 bp,编码78个氨基酸,编码的氨基酸序列中含有14个半胱氨酸残基( Cys,C),呈C-C,C-X-C,C-X-X-C排列,集中分布在肽链的N端和C端,基因编码蛋白的分子量为7.6036 kD,等电点为4.71。系统发育分析表明,小蓬金属硫蛋白NeMT2与藜科的海蓬子( AEF01492)和盐穗木( AHI62953)同源性最高,其次是甜菜( XP 010667708.1)。生物信息学分析表明,金属硫蛋白NeMT2无信号肽结构,属于非跨膜亲水性蛋白;疏水性分析表明,NeMT2蛋白的35~45个氨基酸之间有较强的疏水性,其中第41位Asp具最强的疏水性(1.444);结构预测分析该蛋白质二级结构的主要元件是无规则卷曲。通过RT-PCR对NeMT2基因的表达分析发现, NeMT2基因在铜矿区和非铜矿区的小蓬叶片中均有表达,但该基因在铜矿区小蓬叶片的表达量明显高于非铜矿区。将小蓬NeMT2基因定向克隆到植物表达载体pCAMBIA1300的35S 启动子下游,构建该基因的植物超表达载体pCAMBIA1300＋NeMT2。该研究结果为进一步研究该基因的功能和小蓬响应重金属胁迫的分子机制提供了一定基础。     

Improvement of Aspergillus oryzae for hyperproduction of endoglucanase: expression cloning of cmc-1 gene of Aspergillus aculeatus

FI-Carboxymethylcellulase (cmc1; family 12) is one of the endoglucanases of Aspergillus aculeatus and consists of single polypeptide chain of 221 amino acids. The cmc1 gene was expressed in Aspergillus oryzae niaD300 (niaD⁻) under promoter 8142. The plasmid pCMG14 carrying the cmc1 gene at PstI site was used as a source of the gene (920 bp) and Aspergillus oryzae was successfully transformed by the plasmid pNAN-cmc1 (harboring cmc1 gene). The plasmid was integrated in Aspergillus oryzae niaD300 genome at niaD locus and the transformed fungus constitutively produced very high amounts of endoglucanases when grown on glucose, maltose, soluble starch and wheat bran.     

Potential of seeds of Psoralea corylifolia L. for the management of phytopathogenic spp.

Aqueous and solvent extracts of seeds of P. corylifolia were evaluated for antifungal activity by poisoned food technique against eight important phytopathogenic species of Fusarium commonly associated with maize seeds. Antifungal activity was observed in both aqueous and solvent extracts. Petroleum ether extract showed highly significant activity against all the Fusarium species. F. graminearum was highly susceptible, while F. lateritium was least susceptible. The antifungal activity increased with increasing concentration of the extract. The minimal inhibitory concentration (MIC) value of the aqueous extract for F. graminearum was 15% and for F. equiseti, F. moniliforme, F. semitectum and F. solani it was 40%. Total inhibition was not observed in the case of F. lareritium, F. oxysporum and F. proliferatum. The results of the study are of immense value in the management of seed borne phytopathogenic species of Fusarium known to cause significant yield loss in maize.     

Comparative demography of sympatric populations of Lacerta vivipara and Lacerta agilis

Summary A mark-recapture study was carried out in sympatric populations of Lacerta agilis and Lacerta vivipara in the Netherlands from 1976 to 1982. In most years the age structure of both populations was pyramidal. For both species life expectation of females was higher and on average they did live longer. Hence the sex ratio for adults deviated significantly from 1.0 in favour of females. Maximum age for Lacerta vivipara was 8 years (female) and for Lacerta agilis 12 years (male). The density of both species fluctuated around 100/ha. The biomass of Lacerta agilis was twice that of Lacerta vivipara. In Lacerta vivipara the 3rd and 4th calendar year class supplied 78% of total net reproduction; in Lacerta agilis the 4th, 5th, and 6th calendar year classes supplied 68%. In both populations the population replacement rate was 2. Population turnover time was 4.83 years for Lacerta agilis and 2.81 for Lacerta vivipara. The life history strategy of the Lacerta vivipara population is compared with six other European Lacertavivipara populations.     

Infestation of taiga ticks with borrelias in the territory of Novosibirsk Scientific Center (Siberian Branch,Russian Academy of Sciences)

Borrelia specimens were revealed in taiga ticks Ixodes persulcatus collected in the wild by flagging and also in ticks provided by the Vaccination section of the Novosibirsk Scientific Center, Siberian Branch of the Russian Academy of Sciences (NSC); these ticks were obtained from patients attacked by ticks. Isolation of borrelias in the BSK-H medium had demonstrated the presence of B. garinii, B. afzelii, and B. miyamotoi in the territory of NCS. B. miyamotoi isolates were unstable, loosing their growth ability during subsequent cultivation. DNA of the three above species was detected by PCR in tick samples collected by flagging and obtained from humans. DNA of B. garinii was recorded in ticks more often; DNA of B. afzelii was found less frequently; B. miyamotoi DNA was detected in the smallest number of ticks. In ticks collected by flagging, DNA of B. garinii, B. afzelii, and B. miyamotoi was detected in 38.6%, 9.9%, and in 3.9% of specimens, respectively. In ticks collected from attacked humans, the number of positive tests was lower; e.g., DNA of B. garinii, B. afzelii, and B. miyamotoi was detected in 24.2%, 6.9%, and in 5.6% of samples, respectively. Mixed infection of ticks with two Borrelia species was also detected; DNA of B. miyamotoi and of B. garinii was detected in mixed infections more frequently.     

Production of Gastrodin Through Biotransformation of p-hydroxybenzaldehyde Using Cell Suspension Cultures of Datura tatula L.

The conversion of exogenous p-hydroxybenzaldehyde into p-hydroxy-methyl-phenol-β-D-glucoside (gastrodin) was studied using cell suspension cultures of Datura tatula L. The chemical structure of the synthesized gastrodin was identified on the basis of spectral analysis and chemical evidence. The procedure of conversion of p-hydroxybenzaldehyde into gastrodin by D. tatula L. cell suspension cultures was established. The synthesized gastrodin (II) was isolated from the ferment liquor and identified by spectral analysis. Simultaneously, the p-hydroxybenzyl alcohol (I) that was converted through biotransformation of p-hydroxybenzaldehyde by cell suspension cultures of D. tatula L. was also isolated and identified. The efficiency of glucosylation of p-hydroxybenzaldehyde was remarkably enhanced by the addition of salicylic acid (0.1 mg/L) and the maintenance of low pressure (0.001 MPa) in a 25-L airlift loop bioreactor. The biotransformation of exogenous p-hydroxybenzaldehyde to gastrodin using cell suspension cultures of D. tatula L. is a promising approach.     

Mapping of cysteine genes on the chromosome of Pseudomonas aeruginosa PAO

Summary Three loci coding for different steps in the pathway of cysteine biosynthesis have been mapped by R68.45-mediated coconjugation analysis. The cysteine auxotrophic mutants could be subdivided into sulfite and sulfide-requiring mutants. Sulfide-requiring mutants (cysIV group) were localized at a single position between pyrF and pur-67, while sulfite-requiring mutants (cysI and cysII) mapped at two different regions. The cysI group was also localized between pyrF and pur-67, although more distal to pyrF than the cysIV group. This group included the cys-54 marker, which has been mapped previously. The second group of sulfite-requiring mutants, designated as cysII, was cotransducible with hisI and localized at the end of the PAO chromosomal map. This location was also confirmed for the marker cys-59.The marker cys-59 (which was cotransducible with his1) was cotransferred by R68.45-mediated conjugations with both the late marker pur-67 and the early marker ilv-226. As the late marker hisI was positioned at about 60–65 min (Herrmann and Günther, in press) the length of the PAO chromosome was estimated to be about 70 min.     

Effect of bark extract of different plant species on the hatching of Meloidogyne incognita

An in vitro experiment was conducted to evaluate the effect of bark extract of different plant species viz., Azadirachta indica, Acacia nilotica, Emblica officinalis, Eucalyptus citriodora, Mangifera indica and Terminalia arjuna at varying concentration levels S, S/2, S/10 and S/100 on the hatching of Meloidogyne incognita. One hundred per cent inhibition was observed with Azadirachta indica under both un-decomposed and decomposed conditions. The effect was decreased with Acacia nilotica, Emblica officinalis, Eucalyptus citriodora, Mangifera indica and Terminalia arjuna, respectively. Effect of decomposed bark extract on hatching was more pronounced as compared to un-decomposed bark extract.     

Comparison of the main siderophores produced by some species of Streptomyces

The production of siderophores by four Streptomyces strains, S. ambofaciens, S. coelicolor, S. lividans, and S. viridosporus, was studied under iron-limited conditions. S. viridosporus produced two different siderophores: the linear desferrioxamine B and the cyclic desferrioxamine E. The latter was produced by the other strains and was the main siderophore of S. ambofaciens. The linear desferrioxamine G was the major form of S. coelicolor and S. lividans. The uptake rates of ⁵⁵Fe-labeled ferrioxamines by S. lividans and S. viridosporus showed that the G form was incorporated less efficiently than the B and E forms.     

The disruption of JEN1 from Candida albicans impairs the transport of lactate

A lactate permease was biochemically identified in Candida albicans RM1000 presenting the following kinetic parameters at pH 5.0: K_m 0.33±0.09 mM and V_max 0.85±0.06 nmol s^?1 mg dry wt^?1. Lactate uptake was competitively inhibited by pyruvic and propionic acids; acetic acid behaved as a non-competitive substrate. An open reading frame (ORF) homologous to Saccharomyces cerevisiae gene JEN1 was identified (CaJEN1). Deletions of both CaJEN1 alleles of C. albicans (resulting strain CPK2) resulted in the loss of all measurable lactate permease activity. No CaJEN1 mRNA was detectable in glucose-grown cells neither activity for the lactate transporter. In a medium containing lactic acid, CaJEN1 mRNA was detected in the RM1000 strain, and no expression was found in cells of CPK2 strain. In a strain deleted in the CaCAT8 genes the expression of CaJEN1 was significantly reduced, suggesting the role of this gene as an activator for CaJEN1 expression. Both in C. albicans and in S. cerevisiae cells CaJEN1-GFP fusion was expressed and targeted to the plasma membrane. The native CaJEN1 was not functional in a S. cerevisiae jen1Δ strain. Changing ser²¹⁷-CTG codon (encoding leucine in S. cerevisiae) to a TCC codon restored the permease activity in S. cerevisiae, proving that the CaJEN1 gene codes for a monocarboxylate transporter.     

Insecticidal Activity of the Protein Encoded by the cryV Gene of Bacillus thuringiensis kurstaki INA-02

A new host specificity was discovered with the insecticidal protein encoded by the cryV gene. The cryV gene was cloned from the Bacillus thuringiensis kurstaki INA-02 strain, which was selected among a number of B. thuringiensis isolates because of its high activity against Spodoptera litura. Analyses by polymerase chain reaction (PCR) revealed that INA-02 contained the cryIA(a) and cryV genes. Since no Spodoptera activity was observed with B. thuringiensis sotto, which contained only cryIA(a), insecticidal activity of the protein encoded by the cryV gene was investigated with several insect species including S. litura. For bioassay, the cryV gene was highly expressed in an acrystalliferous B. thuringiensis strain, BT51. The CryV protein from BT51 was assayed against larvae of three lepidopteran species, Bombyx mori, S. litura, and Plutella xylostella. The protein was highly active against S. litura and P. xylostella, suggestive that the protein contributes to the unique activity of INA-02.     

A review of length–weight relationships of fishes from freshwaters of Turkey

This paper presents 145 length–weight relationships gathered from the literature pertaining to 30 Turkish freshwater fish species belonging to six families. The value of the slope b ranged from 2.04 for Carassius carassius to 3.46 for Scardinus erythroptalmus. The mean value of b was 2.91 (SD = 0.305), which did not differ significantly from 3.0 (t‐test, P > 0.05). The median value of b was 2.95; 50% of the b values ranged from 2.68 to 3.14. The plot of log a vs b was used to detect outliers.     

Life history adaptations and stress tolerance of four domestic species of Drosophila

Life history traits and stress tolerance were studied in four domestic species of Drosophila–D. melanogaster, D. simulans, D. auraria and D. immigrans– to understand how they adapt to their environments. In all species, larval weight approximately doubled in 1 day. The relative egg weight (egg weight : pupal weight) was smaller and the larval period was longer in D. immigrans than in the other three species. The pupal period was the longest in D. auraria. However, the adaptive significance of these differences in larval and pupal periods was not clear. The pupal case was generally thicker in the larger species, probably to support the larger pupal body. The start of oviposition was earliest and reproductive effort was greatest in female D. simulans, followed by female D. melanogaster. In contrast, starvation tolerance and the increase in bodyweight after eclosion was greater in D. immigrans and D. auraria than in the other two species. Pupal desiccation tolerance was greatest in D. melanogaster and lowest in D. auraria, and the less tolerant species seemed to select more humid sites for pupation. Adult tolerance to desiccation was greatest in D. melanogaster and lowest in D. simulans. In contrast, adult cold tolerance was greater in D. auraria and adult heat tolerance was lower in D. immigrans than in the other species. These differences in life history traits and stress tolerance represent the Drosophila species differential adaptations, and are assumed to allow coexistence of the species.     

First evidence of the occurrence of Turnip mosaic virus in Ukraine and molecular characterization of its isolate

A total of 54 samples of Brassicaceae crops showing symptoms of mosaic, mottling, vein banding and/or leaf deformation were collected in Kyiv region (northern central part of Ukraine) in 2014–2015. A half of collected samples was found to be infected with Turnip mosaic virus (TuMV), and TuMV was detected in samples from Brassica oleracea var. capitata (cabbage), Raphanus sativus, Brassica juncea, Raphanus sp., Sinapis alba, Camelina sativa and Bunias orientalis (weed). The full‐length sequence of the genomic RNA of a Ukrainian isolate (UKR9), which was isolated from cabbage, was determined. Recombination analysis of UKR9 isolate showed that this isolate was an interlineage recombinant of world‐Brassica and Asian‐Brassica/Raphanus phylogenetic groups. This study shows for the first time the occurrence of TuMV in Ukraine.     

Consequences of invasion by Pseudosuccinea columella on the dynamics of native lymnaeids living on the acid soils of central France

Eight road ditches located on granite and colonised by the native lymnaeids Galba truncatula or Omphiscola glabra were studied for 2 years to follow the distribution and density of these species in their habitats when the invasive lymnaeid Pseudosuccinea columella was introduced. Six other ditches populated only by a native lymnaeid or by P. columella were used as controls. The same experiment was also carried out for 3 years in seven water tanks placed in semi-natural conditions. The colonisation of P. columella was more rapid in habitats with G. truncatula than in those with O. glabra. Similarly, this colonisation led to a progressive decrease in the number of native lymnaeids in these ditches and this decrease was also faster for G. truncatula than for O. glabra. A similar decrease of G. truncatula and O. glabra was also noted when P. columella was introduced into water tanks placed in semi-natural conditions. The habitats of G. truncatula or O. glabra on the acid soils of central France can be successfully colonised by P. columella, and the establishment of this invasive species may lead to a decrease of the two native lymnaeids or even the local extinction of one of these (G. truncatula).     

Degradative pathway of p-aminoazobenzene by Bacillus subtilis

Summary p-Aminoazobenzene was degraded by Bacillus subtilis to aniline and p-phenylenediamine by reductive fission of an azo bond. The aniline was then acetylated to acetanilide while the p-phenylenediamine underwent 2 successive acetylations to yield p-aminoacetanilide and p-phenylenediacetanilide. In addition, another pathway was found in Bacillus subtilis in which p-aminoazobenzene was metabolised to p-acetamidoazobenzene.     

The Structure of Graphinone

A microorganism M–2 was isolated as a strain capable of converting (—)-menthone to other compounds. The strain was identified as Pseudomonas fluorescens by taxonomical investigation. The conversion products of (—)-menthone were determined to be (—)-t-4-isopropyl-3-oxo-r-l-cyclohexanecarboxylic acid,* (+)-c-4-isopropyl-3-oxo-r-1-cyclohexane-carboxylic acid* and (+)-t-3-hydroxy-t-4-isopropyI-r-l-cyclohexanecarboxylic acid.* As the main pathway, it was proposed that (—)-menthone was oxidized to a keto acid which was successively reduced to a hydroxy acid.     

Purification of cytochrome a 1 c 1 from Nitrobacter agilis and characterization of nitrite oxidation system of the bacterium

Cytochrome a ₁ c ₁ was highly purified from Nitrobacter agilis. The cytochrome contained heme a and heme c of equimolar amount, and its reduced form showed absorption peaks at 587, 550, 521, 434 and 416 nm. Molecular weight per heme a of the cytochrome was estimated to be approx. 100,000–130,000 from the amino acid composition. A similar value was obtained by determining the protein content per heme a. The cytochrome molecule was composed of three subunits with molecular weights of 55,000, 29,000 and 19,000, respectively. The 29 kd subunit had heme c.Hemes a and c of cytochrome a ₁ c ₁ were reduced on addition of nitrite, and the reduced cytochrome was hardly autoxidizable. Exogenously added horse heart cytochrome c was reduced by nitrite in the presence of cytochrome a ₁ c ₁; K _m values of cytochrome a ₁ c ₁ for nitrite and N. agilis cytochrome c were 0.5 mM and and 6 M, respectively. V _max was 1.7 mol ferricytochrome c reduced/min·mol of cytochrome a ₁ c ₁ The pH optimum of the reaction was about 8. The nitrite-cytochrome c reduction catalyzed by cytochrome a ₁ c ₁ was 61% and 88% inhibited by 44M azide and cyanide, respectively. In the presence of 4.4 mM nitrate, the reaction was 89% inhibited. The nitrite-cytochrome c reduction catalysed by cytochrome a ₁ c ₁ was 2.5-fold stimulated by 4.5 mM manganous chloride. An activating factor which was present in the crude enzyme preparation stimulated the reaction by 2.8-fold, and presence of both the factor and manganous ion activated the reaction by 7-fold.Cytochrome a ₁ c ₁ showed also cytochrome c-nitrate reductase activity. The pH optimum of the reaction was about 6. The nitrate reductase activity was also stimulated by manganous ions and the activating factor.