The relationship between endophyte transition and plant species coexistence

The survival possibilities of terrestrial plant species are determined by their competitive abilities. One factor that affects competitive ability is the community of microorganisms that lives in association with the plants. Microorganisms affect the competitive dominance among plants by means of their metabolites. In this paper, we study the multiple plant species coexistence mediated by interactions with endophytes (fungi). The population dynamics are described by a revised lottery competition model for multiple plant species, each of which is divided into two classes: plants with endophytes (denoted EP) and plants without endophytes (NEP). The model includes the transition of seeds from EP to NEP. We show multiple species of plants cannot coexist in a steady state if this transition is density independent, but can coexist in a steady state if this transition is an increasing function of population density.     

Changes in Individual Allometry Can Lead to Species Coexistence without Niche Separation

The principle of competitive exclusion is a fundamental tenet of ecology. Commonly used competition models predict that at most only one species per limiting resource can coexist in the same environment at steady state; hence, the upper limit to species diversity depends only on the number of limiting resources and not on the rates of resource supply. We demonstrate that such model behavior is the result of both the growth and biomass turnover functions being proportional to the population biomass. We argue that at least the growth function should be a nonlinear, concave downward function of biomass. This form for the growth function should arise simply because of changes in the allometry of individuals in the population. With this change in model structure, we show that any number of species can coexist at an asymptotically stable steady state, even where there is only one limiting resource. Furthermore, if growth increases nonlinearly with biomass, the steady-state resource concentration and hence the potential for biodiversity increases as the resource supply rate increases. Received 31 August 2001; accepted 10 April 2002.     

Ecological bistability and evolutionary reversals under asymmetrical competition

Abstract How does the process of life‐history evolution interplay with population dynamics? Almost all models that have addressed this question assume that any combination of phenotypic traits uniquely determine the ecological population state. Here we show that if multiple ecological equilibria can exist, the evolution of a trait that relates to competitive performance can undergo adaptive reversals that drive cyclic alternation between population equilibria. The occurrence of evolutionary reversals requires neither environmentally driven changes in selective forces nor the coevolution of interactions with other species. The mechanism inducing evolutionary reversals is twofold. First, there exist phenotypes near which mutants can invade and yet fail to become fixed; although these mutants are eventually eliminated, their transitory growth causes the resident population to switch to an alternative ecological equilibrium. Second, asymmetrical competition causes the direction of selection to revert between high and low density. When ecological conditions for evolutionary reversals are not satisfied, the population evolves toward a steady state of either low or high abundance, depending on the degree of competitive asymmetry and environmental parameters. A sharp evolutionary transition between evolutionary stasis and evolutionary reversals and cycling can occur in response to a smooth change in ecological parameters, and this may have implications for our understanding of size‐abundance patterns.     

植物内生菌及其防治植物病害的研究进展

综述了植物内生菌及其防治植物病害的研究进展.植物内生菌分布广,种类多,几乎存在于所有目前已研究过的陆生及水生植物中,目前全世界至少已在80个属290多种禾本科植物中发现有内生真菌,在各种农作物及经济作物中发现的内生细菌已超过120种.感染内生菌的植物宿主往往具有生长快速、抗逆境、抗病害、抗动物危害等优势,比未感染内生菌的植株更具生存竞争力.植物内生菌的防病机理主要表现在通过产生抗生素类,水解酶类,植物生长调节剂和生物碱类物质,与病原菌竞争营养物质,增强宿主植物的抵抗力以及诱导植物产生系统抗性等途径抑制病原菌生长.另外,对植物内生真菌和内生细菌的分离、筛选和检测方法;利用植物内生菌控制植物病害的途径如人工接种内生菌,利用内生菌代谢产生的抗生素以及将内生菌作为基因工程的载体菌等进行了综述.同时,对植物内生菌作为生物防治因子未来发展前景及存在的问题进行了讨论.利用植物内生菌作为生物防治因子进行大田防病,需要考虑它的病理学、生态学和形态学等方面的影响.     

Coexistence through mutualist‐dependent reversal of competitive hierarchies

Mechanisms that allow for the coexistence of two competing species that share a trophic level can be broadly divided into those that prevent competitive exclusion of one species within a local area, and those that allow for coexistence only at a regional level. While the presence of aphid‐tending ants can change the distribution of aphids among host plants, the role of mutualistic ants has not been fully explored to understand coexistence of multiple aphid species in a community. The tansy plant (Tanacetum vulgare) hosts three common and specialized aphid species, with only one being tended by ants. Often, these aphids species will not coexist on the same plant but will coexist across multiple plant hosts in a field. In this study, we aim to understand how interactions with mutualistic ants and predators affect the coexistence of multiple species of aphid herbivores on tansy. We show that the presence of ants drives community assembly at the level of individual plant, that is, the local community, by favoring one ant‐tended species, Metopeurum fuscoviride, while preying on the untended Macrosiphoniella tanacetaria and, to a lesser extent, Uroleucon tanaceti. Competitive hierarchies without ants were very different from those with ants. At the regional level, multiple tansy plants provide a habitat across which all aphid species can coexist at the larger spatial scale, while being competitively excluded at the local scale. In this case, ant mutualist‐dependent reversal of the competitive hierarchy can drive community dynamics in a plant–aphid system.     

Plants that differ in height investment can coexist if they are distributing non-uniformly within an area

In nature, there is a large variability in the intrinsic height of plants living within an area. The question arises whether these height differences affect the plants’ ability to coexist and thus is an adaptive trait.Using a biologically mechanistic model, we explored the possibilities for coexistence of plant types that differ in their pattern of allocation between stem (i.e. height growth) and other organs. We simulated the competition for light between growing individual plants. The study was game theoretical in the sense that each individual plant at any time affected the light availability for all plants in a locality, making conditions variable throughout the growing season and between seasons when the composition of competing plants changed.It was found that plant types that differed in their allocation to height growth could coexist over the course of years when these plants distributed their seeds non-uniformly in space, creating local differences in plant density. At each different density, one type with a specific investment in height performed better (i.e. achieved a greater seed production) than the rest of the types, thus preventing the exclusion of that type over the years. The resulting model community was self-assembling; local densities and competitive pressures originated as traits from the model plants themselves and were not the result of imposed external factors acting upon the model community.This mechanistic modelling approach shows that a condition as simple as a non-uniform distribution of seeds can generate the conditions for plants of various height growth strategies to live together over multiple generations. This study suggests that differences in plant height can be an emerging property of dispersing populations.     

Plant population growth and competition in a light gradient: a mathematical model of canopy partitioning

Can a difference in the heights at which plants place their leaves, a pattern we call canopy partitioning, make it possible for two competing plant species to coexist? To find out, we examine a model of clonal plants living in a nonseasonal environment that relates the dynamical behavior and competitive abilities of plant populations to the structural and functional features of the plants that form them. This examination emphasizes whole plant performance in the vertical light gradient caused by self-shading. This first of three related papers formulates a prototype single species Canopy Structure Model from biological first principles and shows how all plant properties work together to determine population persistence and equilibrium abundance. Population persistence is favored, and equilibrium abundance is increased, by high irradiance, high maximum photosynthesis rate, rapid saturation of the photosynthetic response to increased irradiance, low tissue respiration rate, small amounts of stem and root tissue necessary to support the needs of leaves, and low density of leaf, stem, and root tissues. In particular, equilibrium abundance decreases as mean leaf height increases because of the increased cost of manufacturing and maintaining stem tissue. All conclusions arise from this formulation by straightforward analysis. The argument concludes by stating this formulation's straightforward extension, called a Canopy Partitioning Model, to two competing species.     

Competition and coexistence in regional habitats

Habitat heterogeneity plays a key role in the dynamics and structures of communities. In this article, a two-species metapopulation model that includes local competitive dynamics is analyzed to study the population dynamics of two competing species in spatially structured habitats. When local stochastic extinction can be ignored, there are, as in Lotka-Volterra equations, four outcomes of interspecific competition in this model. The outcomes of competition depend on the competitive intensity between the competing pairs. An inferior competitor and a superior competitor, or two strongly competing species, can never stably coexist, whereas two weak competitors (even if they are very similar species) may coexist over the long term in such environments. Local stochastic extinction may greatly affect the outcomes of interspecific competition. Two competing species can or cannot stably coexist depending not only on the competitive intensity between the competing pairs but also on their precompetitive distributions. Two weak competitors that have similar precompetitive distributions can always regionally coexist. Two strongly competing species that competitively exclude each other in more stable habitats may be able to stably coexist in highly heterogenous environments if they have similar precompetitive distributions. There is also a chance for an inferior competitor to coexist regionally or even to exclude a superior competitor when the superior competitor has a narrow precompetitive distribution and the inferior competitor has a wide precompetitive distribution.     

Exploring the potentialities of beneficial endophytes for improved plant growth

Pathogen affects plant growth, host health and productivity. Endophytes, presumed to live inside the plant tissues, might be helpful in sustaining the future of agriculture. Although recent studies have proven that endophytes can be pathogenic, commensal, non-pathogenic, and/or beneficial, this review will focus on the beneficial category only. Beneficial endophytes produce a number of compounds which are useful for protecting plants from environmental conditions, enhancing plant growth and sustainability, while living conveniently inside the hosts. The population of endophytes is majorly controlled by location, and climatic conditions where the host plant grows. Often the most frequently isolated endophytes from the tissues of the plant are fungi, but sometimes greater numbers of bacteria are isolated. Beneficial endophytes stand a chance to replace the synthetic chemicals currently being used for plant growth promotion if carefully explored by researchers and embraced by policymakers. However, the roles of endophytes in plant growth improvement and their behavior in the host plant have not been fully understood. This review presents the current development of research into beneficial endophytes and their effect in improving plant growth.     

Population dynamics and competition in chemostat models with adaptive nutrient uptake

 The standard Monod model for microbial population dynamics in the chemostat is modified to take into consideration that cells can adapt to the change of nutrient concentration in the chemostat by switching between fast and slow nutrient uptake and growing modes with asymmetric thresholds for transition from one mode to another. This is a generalization of a modified Monod model which considers adaptation by transition between active growing and quiescent cells. Global analysis of the model equations is obtained using the theory of asymptotically autonomous systems. Transient oscillatory population density and hysteresis growth pattern observed experimentally, which do not occur for the standard Monod model, can be explained by such adaptive mechanism of the cells. Competition between two species that can switch between fast and slow nutrient uptake and growing modes is also considered. It is shown that generically there is no coexistence steady state, and only one steady state, corresponding to the survival of at most one species in the chemostat, is a local attractor. Numerical simulations reproduce the qualitative feature of some experimental data which show that the population density of the winning species approaches a positive steady state via transient oscillations while that of the losing species approaches the zero steady state monotonically. Received 4 August 1995; received in revised form 15 December 1995     

Interactions among fungal endophytes,grasses and herbivores

The interaction between two species often depends on the presence or absence of a third species. One widespread three-species interaction involves fungal endophytes infecting grasses and the herbivores that feed upon them. The endophytes are allied with the fungal family Clavicipitaceae and grow systemically in intercellular spaces in above-ground plant tissues including seeds. Like relatedClaviceps species, the endophytes produce a variety of alkaloids that make the host plants toxic or distasteful to herbivores. A large number of grass species are infected, especially cool-season grasses in temperate areas. Field and laboratory studies have shown that herbivores avoid infected plants in choice trials and suffer increased mortality and decreased growth on infected grasses in feeding experiments. Resistance to herbivores may provide a selective advantage to infected plants in competitive interactions with noninfected plants. Recent studies have shown that differential herbivory can reverse competitive hierarchies among plant species. Both endophyte-infected and noninfected tall fescue grass (Festuca arundinacea) are outcompeted by orchardgrass (Dactylis glomerata) in the absence of insect herbivory. However, when herbivores are present infected tall fescue outcompetes orchardgrass. These results suggest that the frequency of infection in grass species and grassland communities will increase over time. Several studies are reviewed illustrating increases in infection frequency within grass populations subject to herbivore pressure. Endophytic fungi may be important regulators of plant-herbivore interactions and so indirectly affect the structure and dynamics of plant communities.     

Analysis of a lottery competition model with limited nutrient availability

How a plant species utilizes a limited nutrient is important for its survival. The purpose of this work is to examine how nutrient utilization mechanisms (for seed production) affect the coexistence of competing plant species. We construct a revised lottery model that uses one of three possible kinds of nutrient utilization functions. In all cases the models suggest that two species can coexist under certain circumstances, but that three species cannot coexist, at least when the nutrient utilization functions are continuous functions of nutrient uptake. However, in the discontinuous case three species can coexist in a state of sustained oscillations. The results suggest that one need pay close attention to the differences in the nutrient utilization mechanisms among competing plant species in order to ascertain the competitive outcome.     

Effects of competitive asymmetry on a local density model of plant interference

Although competition between plants is usually asymmetric (i.e. larger plants have a disproportionate effect on smaller plants) almost all models of plant competition at the local level have assumed symmetric competition. We add a simple version of competitive asymmetry to the local density neighborhood models of plant interference and population dynamics developed by Pacala & Silander (1985, Am. Nat. 125, 385-411; 1987, Oikos 48, 217-224) by assuming that plants within a neighborhood can be put in a linear dominance hierarchy based upon their initial size. The size of a focal plant is a function of the number of dominant and the number of subordinate neighbors within its neighborhood, with subordinate neighbors having less of an effect than dominant ones. Asymmetry prevents precipitous changes in focal plant size with changes in local density, making the relationship between focal plant size and local density hyperbolic, even if the symmetric model is not hyperbolic. Thus, asymmetry makes the model conform to the law of constant final yield, irrespective of the form of the relationship between plant size and local crowding. Asymmetry also prevents population dynamic oscillations in the model in cases in which it would occur in the absence of asymmetry. The results show that asymmetry has major effects on a model of local interference in plants, and point to the importance of including it in such models.     

A lotka-volterra model of coexistence between a sexual population and multiple asexual clones

At carrying capacity, small advantages in competitive ability can compensate a sexual population for its two-fold disadvantage in growth capacity when facing invasion by asexual mutants. In this paper, we develop a generic analytical model to consider the ecology of a sexual population comprising equal numbers of males and females, competing for shared prey resources with multiple female-only clones. We assume that the clones arise from the sexual population and are distinguished from it only by having narrower resource niches and twice the growth capacity. For sexual populations, at density-dependent carrying capacity, intra-specific competition between clonal individuals prevents them from realizing their two-fold advantage in intrinsic growth. This prediction leads to three novel outcomes: (i) a sexual population can coexist with any number of clones, provided their combined competitive impact remains less than the impact of the clones on each other; (ii) a sexual species can immediately exclude asexual invaders if it is a fast growing and strong competitor of shared resources and also has refuge in an abundant alternative resource; (iii) the rate of accumulation of clones in a sexual population will be slowed by intra and inter-specific competition amongst the clones themselves, in addition to the competitive impact from the original sexual population.     

Analysis of a lottery competition model with limited nutrient availability

How a plant species utilizes a limited nutrient is important for its survival. The purpose of this work is to examine how nutrient utilization mechanisms (for seed production) affect the coexistence of competing plant species. We construct a revised lottery model that uses one of three possible kinds of nutrient utilization functions. In all cases the models suggest that two species can coexist under certain circumstances, but that three species cannot coexist, at least when the nutrient utilization functions are continuous functions of nutrient uptake. However, in the discontinuous case three species can coexist in a state of sustained oscillations. The results suggest that one need pay close attention to the differences in the nutrient utilization mechanisms among competing plant species in order to ascertain the competitive outcome.     

Vertical distribution and composition of phytoplankton under the influence of an upper mixed layer

The vertical distribution of phytoplankton is of fundamental importance for the dynamics and structure of aquatic communities. Here, using an advection-reaction-diffusion model, we investigate the distribution and competition of phytoplankton species in a water column, in which inverse resource gradients of light and a nutrient can limit growth of the biomass. This problem poses a challenge for ecologists, as the location of a production layer is not fixed, but rather depends on many internal parameters and environmental factors. In particular, we study the influence of an upper mixed layer (UML) in this system and show that it leads to a variety of dynamic effects: (i) Our model predicts alternative density profiles with a maximum of biomass either within or below the UML, thereby the system may be bistable or the relaxation from an unstable state may require a long-lasting transition. (ii) Reduced mixing in the deep layer can induce oscillations of the biomass; we show that a UML can sustain these oscillations even if the diffusivity is less than the critical mixing for a sinking phytoplankton population. (iii) A UML can strongly modify the outcome of competition between different phytoplankton species, yielding bistability both in the spatial distribution and in the species composition. (iv) A light limited species can obtain a competitive advantage if the diffusivity in the deep layers is reduced below a critical value. This yields a subtle competitive exclusion effect, where the oscillatory states in the deep layers are displaced by steady solutions in the UML. Finally, we present a novel graphical approach for deducing the competition outcome and for the analysis of the role of a UML in aquatic systems.     

Spatial patterns of fungal endophytes in a subtropical montane rainforest of northern Taiwan

Fungal endophytes of plants are ubiquitous and important to host plant health. Wood-inhabiting and foliar endophyte communities from multiple tree hosts were sampled at multiple spatial scales across the Fushan forest dynamics plot in northern Taiwan, using culture-free, community DNA amplicon sequencing methods. Fungal endophyte communities were distinct between leaves and wood, but the mycobiomes were highly variable across and within tree species. Despite this, host tree species was an important predictor of mycobiome community-composition. Within a single common tree species, “core” mycobiomes were characterized using co-occurrence analysis. The spatial co-occurrence patterns of these few species of fungal endophytes appear to explain the strong host effect. For wood endophytes, a consistent core mycobiome coexisted with the host across the extent of the study. For leaf endophytes, the core fungi resembled a more dynamic, “gradient” model of the core microbiome, changing across the topography and distance of the study.     

Properties of bacterial endophytes and their proposed role in plant growth

Bacterial endophytes live inside plants for at least part of their life cycle. Studies of the interaction of endophytes with their host plants and their function within their hosts are important to address the ecological relevance of endophytes. The modulation of ethylene levels in plants by bacterially produced 1-aminocyclopropane-1-carboxylate deaminase is a key trait that enables interference with the physiology of the host plant. Endophytes with this capacity might profit from association with the plant, because colonization is enhanced. In turn, host plants benefit by stress reduction and increased root growth. This mechanism leads to the concept of 'competent' endophytes, defined as endophytes that are equipped with genes important for maintenance of plant-endophyte associations. The ecological role of these endophytes and their relevance for plant growth are discussed here.     

The need to study the holobiome for gainful uses of endophytes

It is established that endophytes (bacteria and fungi) affect positively several traits of their host plants including growth, nutrient acquisition, and tolerance to abiotic and biotic stressors. Owing to this, endophytes are envisaged as a route to improve sustainable agricultural production. However, such effects of endophytes on crops although evident under lab conditions, are devoid of consistency under field conditions. The main reason for this could be the lack of our understanding of the functioning of the endophytes as a consortium within the plant (holobiome). It is essential to study the complex web of interactions which operate in the inner tissues of plants harboring endophytes. I highlight here, alluding to the work on foliar fungal endophytes, the importance of studying endophytes as a consortium rather than merely as one species in isolation to better appreciate their role in the plant holobiome. Such an approach should aid in harnessing the technological potential of endophytes.     

Plant population and genotype effects override the effects of Epichloë endophyte species on growth and drought stress response of Achnatherum robustum plants in two natural grass populations

Aims In cool-season grasses, systemic and vertically transmitted Epichlo? infections often provide a suite of benefits including increased growth, reproduction and competitive abilities. However, these effects of Epichlo? endophytes on their hosts often depend upon host and endophyte genotype and environmental factors.Methods Achnatherum robustum (sleepygrass) harbors at least two Epichlo? species within natural populations in the Southwest USA. We tested the effects of endophyte infection and species, host population and plant genotype (by experimentally removing the endophyte), and soil moisture (a key limiting factor) on growth and drought stress response of infected A. robustum plants from two populations (Weed and Cloudcroft) in the Sacremento Mountains of New Mexico, USA).Important findings Although the two populations harbor distinct Epichlo? species each with very different chemoprofiles, neither endophyte status (infected vs. uninfected) nor endophyte species affected most growth parameters at 8 or 25 weeks of the experiment, except for leaf length. In high water treatment, infected plants from the Weed population had longer leaf length compared with uninfected plants. In contrast, the population of origin affected all growth parameters, including plant height, leaf number, length and width, tiller number and shoot and root biomass, as well as wilting time. Grasses from the Cloudcroft population generally showed greater growth than grasses from the Weed population. Endophyte infection did affect wilting time, with infection in the Weed population generally reducing time to wilting under low and high water, whereas infection in the Cloudcroft population reduced time to wilting only under high water conditions. Our results suggest that plant population and their associated plant genotypes may play a much larger role in endophyte–host grass interactions in varying environments than previously thought. Asexual Epichlo? species may be compatible with only specific host genotypes within populations such that the phenotypic effects due to population may be greater than phenotypic changes influenced by variation in the endophyte.