Molecular phylogeny of the Herpestidae (Mammalia, Carnivora) with a special emphasis on the Asian Herpestes

Until now, phylogenetic studies of the mongooses (Carnivora, Herpestidae) have not included an exhaustive sampling of the Asian members of this family. In this study, we used mitochondrial (Cytochrome b and ND2), nuclear (β-fibrinogen intron 7 and Transthyretin intron 1) sequences from almost all of the recognized mongoose species to produce a well-resolved phylogeny of the Herpestidae. We also performed molecular dating analyses to infer divergence dates of the different lineages within the Herpestidae. Our results confirmed the paraphyly of the Herpestes genus and other phylogenetic relationships, which previously had only been moderately supported. The Asian herpestid species were found to form a monophyletic group within the Herpestidae. Within the Asian species, a cyto-nuclear conflict was discovered between the small Indian mongoose (Herpestes auropunctatus), the Indian gray mongoose (Herpestes edwardsii) and the Javan mongoose (Herpestes javanicus), which may have occurred through interspecific hybridization. This study inferred an Early Miocene origin for the Herpestidae and a Middle Miocene origin for the Asian mongooses.     

Determinants of successful establishment and post‐translocation dispersal of a new population of the critically endangered St. Croix ground lizard (Ameiva polops)

Translocation to areas free of exotic predators, habitat degradation, or disease may be the most viable restoration option for many endangered species. We report on a successful translocation of the critically endangered St. Croix ground lizard, Ameiva polops, extirpated from St. Croix, U.S. Virgin Islands, Caribbean, by predation from introduced mongooses (Herpestes auropunctatus). We translocated 57 adult A. polops from Green Cay to Buck Island in May 2008. We placed 4 females and 3 males each in eight, 100 m², enclosures on Buck Island for 71 days, then the enclosures were opened. During the enclosure period, 20 individuals were identified and 32 others were seen. The average number sighted per survey was only 5.28 (range = 2–10). One hatchling was sighted in an enclosure, indicating a translocated female successfully nested. Body condition of the translocated individuals increased significantly by the end of the enclosure period. Population monitoring surveys at 61 sites across Buck Island showed that 5 years after the initial translocation in June 2013, the new population had grown to an estimated 1,473 individuals and occupied 58.9% of the island. We attribute eradication of mongoose, life history of the species, large propagule size, condition of habitat, soft‐release, use of adults, interagency collaboration, and systematic assessment as primary factors that facilitated this successful translocation. Our findings provide meaningful insights on factors that enhance the potential for successful translocations, and point to new strategies aimed at restoring populations of endangered reptiles in their native ranges.     

The Indian brown mongoose,yet another invader in Fiji

A thriving population of the Indian brown mongoose (Herpestes fuscus), native to southwest India and Sri Lanka, has been discovered on the island of Viti Levu in Fiji. This is the first known introduction of this species and may derive from a pair brought from an unknown source to a private zoo in the late 1970s. They co-occur on Viti Levu with the much smaller small Indian mongoose (H. auropunctatus), and they are probably nocturnally active. No research has been conducted on their activity, diet, or impact on Fiji.     

Conservation implications of small Indian mongoose (<Emphasis Type="Italic">Herpestes auropunctatus</Emphasis>) predation in a hotspot within a hotspot: the Hellshire Hills,Jamaica

This study documents impacts of the small Indian mongoose (Herpestes auropunctatus) on a threatened endemic fauna occurring in a biodiversity hotspot within a hotspot, the Hellshire Hills, Jamaica. We analyzed the stomach contents of 217 mongooses and supplemented this information with behavioural observations. The mongoose’s diet consists primarily of invertebrates and lizards, but bird feathers, mammal hair, and a small number of seeds were also recorded. Invertebrates and lizards accounted for 93% of identified prey items. Of special concern were the remains of threatened species such as the recently re-discovered blue-tailed galliwasp (Celestus duquesneyi), indicating that the mongoose may represent a considerable threat to this poorly known taxon. Dietary analyses did not reveal remains of the Critically Endangered Jamaican iguana (Cyclura collei), yet field observations confirmed that the mongoose is a potent predator of hatchling iguanas. Ignoring issues of sample size, this suggests that the analysis of stomach contents alone may mask important demographic impacts attributable to the mongoose (or other predator species). In other words, rare and endangered species may not be detected in diet samples, but the impact of predation may be of demographic significance for effected prey taxa. This study supports previous arguments concerning the negative impact of the mongoose on endemic insular species, and underscores the utility of employing field observations of mongoose foraging behaviour to provide important insights into the conservation implications of predation by non-native predators.     

Can genetic data confirm or refute historical records? The island invasion of the small Indian mongoose (Herpestes auropunctatus)

Many studies aimed at reconstructing the invasion history of a species rely, in part, on inferences based on patterns of genetic variation. These inferences warrant careful interpretation, however. In particular, given the time scale of most invasions, the typical demography of invasive species in their invaded range, and the available molecular tools, the underlying assumptions of population genetic models will often be violated. Given this fact, we examined the potential of population genetic data for reconstructing the history of serial introductions of the small Indian mongoose, Herpestes auropunctatus. We used simulations to test the power of existing microsatellite data for testing the credibility of historical introduction records. Although our results are generally consistent with most historical records for H. auropunctatus, the existing data have low power to reject alternative historical hypotheses. Simulations of a wide range of founder population sizes show broadly overlapping results, making rather different historical scenarios of introductions difficult to rule out with typical datasets. We advocate caution in the use of molecular population genetics to infer the history of invasive species, and we suggest extensive simulations as a tool to evaluate, in advance, this approach for addressing important research questions.     

Relationships between capture-site characteristics and capture levels of the invasive mongoose on Amami-Oshima Island,Japan

We used a generalized linear model (GLM) to investigate environmental characteristics of capture sites of the invasive small Indian mongoose (Herpestes auropunctatus) on Amami Island, Japan. Data were collected from 2002 to 2011, from an area with the lowest mongoose density. Data on capture levels and environmental factors were obtained within 1 × 1 km grid cells. In addition, we developed an evaluation map that predicts the occurrence of mongooses throughout the island by extrapolating the 2011 results, in which the last mongoose appearance was confirmed. We found that environmental characteristics of capture sites drastically changed during the final stage of the eradication project. From 2002 to 2010, mongooses were captured in grid cells with many gentle ridges. In 2011, when mongoose density became exceedingly low, mongooses seem to have survived in the grid cells with abundant steep ridges, where it was difficult to establish traps. Therefore, environmental factors affected capture levels and the density of the mongoose population. The evaluation map predicts that mongooses could survive on the southwest and southeast island peninsulas. This evaluation map will be helpful in allocating limited labor and financial resources toward the most effective capture strategies. This study suggests that an analysis of pest management data is an important step in the eradication of mongooses. Our results can contribute to long-term projects in invasive pest management not only for the mongoose population on Amami Island, but also for other invasive species globally.     

Genetic relationships among populations of the small Indian mongoose (Urva auropunctata) introduced in Japan

Mammal Research - The small Indian mongoose, Urva auropunctata, is one of the most notorious invasive species in the world. In Japan, the mongoose was introduced to Amami, Kyushu (Kiire region),...     

Constant association of ophiostomatoid fungi with the bark beetle <Emphasis Type="Italic">Ips subelongatus</Emphasis> invading Japanese larch logs

Ceratocystiopsis, Ceratocystis, Grosmannia, and Ophiostoma species were isolated from Ips subelongatus and beetle-infested Japanese larch logs collected at several areas in central and northern Honshu Island, Japan, to determine constant associates of I. subelongatus. Ceratocystiopsis minuta, two species of Ceratocystis, three species of Grosmannia, and four species of Ophiostoma were isolated. Of the fungi isolated in the present study, G. laricis, O. brunneociliatum, and O. piceae were constant associates of the beetles. Ceratocystis fujiensis, Ceratocystiopsis minuta, and Ophiostoma sp. F were occasionally isolated with high frequencies of occurrence but were not consistent associates. Ceratocystis fujiensis was most often isolated as the leading fungal invasion in the sapwood of Japanese larch logs invaded by I. subelongatus, confirming that the fungus acts as a primary invader of sapwood in beetle-attacked logs. Contribution No. 221, Laboratory of Plant Parasitic Mycology, Graduate School of Life and Environmental Sciences, University of Tsukuba     

Genetic structure of <Emphasis Type="Italic">Cerasus jamasakura</Emphasis>, a Japanese flowering cherry,revealed by nuclear SSRs: implications for conservation

The genetic resources of a particular species of flowering cherry, Cerasus jamasakura, have high conservation priority because of its cultural, ecological and economic value in Japan. Therefore, the genetic structures of 12 natural populations of C. jamasakura were assessed using ten nuclear SSR loci. The population differentiation was relatively low (F _ST, 0.043), reflecting long-distance dispersal of seeds by animals and historical human activities. However, a neighbor-joining tree derived from the acquired data, spatial analysis of molecular variance and STRUCTURE analysis revealed that the populations could be divided into two groups: one located on Kyusyu Island and one on Honshu Island. Genetic diversity parameters such as allelic richness and gene diversity were significantly lower in the Kyushu group than the Honshu group. Furthermore, STRUCTURE analysis revealed that the two lineages were admixed in the western part of Honshu Island. Thus, although the phylogeographical structure of the species and hybridization dynamics among related species need to be evaluated in detail using several marker systems, the Kyusyu Island and Honshu Island populations should be considered as different conservation units, and the islands should be regarded as distinct seed transfer zones for C. jamasakura, especially when rapid assessments are required.     

Javan mongoose or small Indian mongoose–who is where?

The Javan mongoose Urva javanica and the small Indian mongoose Urva auropunctata have been recently shown not to be conspecific. However, the limits of their respective distribution ranges have not been fully defined. In particular, Chinese populations were not attributed to either species using molecular data. Furthermore, the small mongooses found on Hong Kong Island (discovered at the end of the 1980s) were not clearly attributed to U. auropunctata or U. javanica, nor their status (native or introduced) established. The main aims of this study were to: (1) investigate the intraspecific genetic diversity and structure within these two species; and (2) clarify the distribution limits of U. auropunctata and U. javanica, and in particular, to identify Chinese populations, and determine which species occurs on Hong Kong Island (and whether they are native or introduced). The analyses of one nuclear and three mitochondrial genes confirmed the separation of U. javanica and U. auropunctata, and showed that the populations from southern China and Hong Kong Island belong to U. javanica. The intraspecific geographical structure of the two species is clarified, and the taxonomic implications are discussed. In particular, we found a strong divergence of Javan individuals of U. javanica, which should be considered a separate subspecies.     

Distribution pattern of Termitomyces types symbiotic with the fungus‐growing termite Odontotermes formosanus on Okinawa Island

Fungus‐growing termites (subfamily Macrotermitinae) cultivate the symbiotic basidiomycete fungus Termitomyces in their fungus comb to digest cellulosic materials and to supply nitrogen‐rich fungal diet. In Japan, the fungus‐growing termite Odontotermes formosanus is found on the Yaeyama Islands and Okinawa Island, Okinawa Prefecture. Odontotermes formosanus is thought to have been recently and artificially introduced to Okinawa Island as its distribution is discontinuous and restricted to small areas. Previous DNA analyses revealed that two types of Termitomyces, namely Termitomyces sp. Type A and Termitomyces sp. Type B, whose fruiting bodies correspond to Termitomyces microcarpus‐like pseudorhiza‐lacking small mushroom and Termitomyces intermedius, respectively, are cultivated by O. formosanus on the Yaeyama Islands. However, information about the Termitomyces types cultivated by O. formosanus on Okinawa Island is limited. To define the fungal types cultivated by O. formosanus on Okinawa Island, I developed a diagnostic polymerase chain reaction method using primer sets specific to the nuclear ribosomal DNA sequences consisting of the internal transcribed spacers (ITS1 and ITS2) and 5.8S rDNA of Termitomyces not using fungal mycelium, but using the termite gut metagenome including fungal DNA as a template. The results indicated that the same two Termitomyces types from Iriomote Island are cultivated by O. formosanus on Okinawa Island. The distribution pattern of Termitomyces types on Okinawa Island showed that Termitomyces sp. Type A is limited to the mountainous side of Sueyoshi Park, despite Termitomyces sp. Type B being widely distributed in the area in which O. formosanus is found. This finding implies that O. formosanus on Okinawa Island was recently introduced from Iriomote Island to Sueyoshi Park.     

Eradication of the mongoose is crucial for the conservation of three endemic bird species in Yambaru,Okinawa Island,Japan

Okinawa Island, Japan, is a globally important biodiversity hotspot. Three endemic bird species, Okinawa rail (Hypotaenidia okinawae), Okinawa woodpecker (Dendrocopos noguchii), and Okinawa robin (Larvivora namiyei), are found only in the Yambaru region of the northern part of Okinawa Island. In order to conserve endemic species, it is important to determine the effect of alien species on endemic species. We conducted playback surveys four times every three years from 2007 to 2016 to evaluate the recent distribution of these three forest-dwelling bird species during the breeding season. Then, the association between the numbers of detections of these three species with the invasive mongoose density and the hardwood forest area was evaluated with a generalized additive mixed model (GAMM). The results showed that the distribution areas of these bird species have been recovering since the 2007 within the small Indian mongoose (Urva auropunctata) controlled area. The GAMM results showed that these bird species were abundant in areas with fewer small Indian mongooses and larger areas of hardwood forests. Thus, the mongoose had a negative impact not only on the flightless rails but also on the woodpeckers and the robins. In recent years, most of the old-growth forests have been designated as protected forests, and large-scale logging is no longer taking place in Yambaru. Eradication of the mongoose is particularly important for the conservation of these three endemic bird species.

     

Taxonomy, host specificity and dietary implications of Hurleytrematoides (Digenea: Monorchiidae) from chaetodontid fishes on the Great Barrier Reef

Five new and five previously described species of Hurleytrematoides are reported from 19 of 34 chaetodontid species examined from the Great Barrier Reef; new species are H. faliexae n. sp., H. galzini n. sp., H. loi n. sp., H. morandi n. sp., and H. sasali n. sp. Previously described species are H. coronatum, H. fijiensis, H. prevoti, H. bartolii, and H. zebrasomae. The genus is rediagnosed in the light of morphological variation of the new species; the degree of spination and shape of the terminal genitalia distinguish individual species. Species of Hurleytrematoides infect almost every clade of the family Chaetodontidae found on the Great Barrier Reef, but obligate corallivores are not infected. All ten species were found at Heron Island on the southern Great Barrier Reef, but only six at Lizard Island on the northern Great Barrier Reef. For three of the four species not present at Lizard Island, the absence appears to be statistically significant. Although all species are apparently restricted to chaetodontids on the GBR, specificity within the family varies from oioxenous to euryxenous; a core/satellite host paradigm explains the distribution of several species.     

Identification of 2-phenylethanol with a rose-like odor from anal sac secretions of the small Indian mongoose (Herpestes auropunctatus)

The small Indian mongoose (Herpestes auropunctatus) is an invasive species in Okinawa and Amami-Oshima, Japan. Major strategies for their eradication have been the use of baited traps, which suffer from decreasing efficiency with declining populations and the bycatch of native animals. To address these concerns, mongoose-specific lures are required. In this study, we aimed to identify species- and/or sex-specific compounds from anal sac secretions of small Indian mongooses. Volatile compounds emitted from male and female mongoose anal sac secretions were analyzed by thermal desorption-gas chromatography-mass spectrometry. In addition to several fatty acids, 2-phenylethanol was identified as a minor compound, which is uncommon in mammalian secretions but a dominant odorant in roses. Female samples emitted higher levels of 2-phenylethanol than male samples did. These findings indicate that 2-phenylethanol is a female-specific volatile compound of anal sac secretions in small Indian mongooses, and it may be useful as an ingredient of mongoose-specific scent lures.     

Invasion dynamics of the glassy-winged sharpshooter <Emphasis Type="Italic">Homalodisca vitripennis</Emphasis> (Germar) (Hemiptera: Cicadellidae) in French Polynesia

The glassy-winged sharpshooter, Homalodisca vitripennis (Germar) [formerly Homalodisca coagulata (Say)] (Hemiptera: Cicadellidae), has recently emerged as a serious invasive pest. From its natural range in the southeast USA and northeast Mexico, it invaded successively California (late 1980s), French Polynesia (1999), Hawaii (2004), and recently Easter Island (2005) inadvertently through the transportation of infested plants. In French Polynesia, H. vitripennis has reached impressive densities becoming an important pest threatening agriculture, native biodiversity, as well as being a major social nuisance. Since 1999, H. vitripennis spread rapidly from Tahiti to neighboring islands, colonizing most of the archipelagos of French Polynesia. In this paper, we present the results of surveys of H. vitripennis populations from 15 islands of French Polynesia and use these data to investigate the invasion dynamics and colonization processes of this pest in a tropical climate. We found H. vitripennis present in 10 islands with two new records confirmed. Our analyses suggest that: (1) H. vitripennis abundance is strongly associated with urbanization, with highest pest densities found in the most developed coastal areas of infested islands, (2) H. vitripennis may exhibit an Allee effect during the early phase of an invasion, and (3) the invasion dynamics of H. vitripennis conform to a stratified dispersal model marked by rapid long-distance human-mediated movement.     

Do not feed the wildlife: associations between garbage use,aggression, and disease in banded mongooses (Mungos mungo)

Urbanization and other human modifications of the landscape may indirectly affect disease dynamics by altering host behavior in ways that influence pathogen transmission. Few opportunities arise to investigate behaviorally mediated effects of human habitat modification in natural host–pathogen systems, but we provide a potential example of this phenomenon in banded mongooses (Mungos mungo), a social mammal. Our banded mongoose study population in Botswana is endemically infected with a novel Mycobacterium tuberculosis complex pathogen, M. mungi, that primarily invades the mongoose host through the nasal planum and breaks in the skin. In this system, several study troops have access to human garbage sites and other modified landscapes for foraging. Banded mongooses in our study site (N = 4 troops, ~130 individuals) had significantly higher within‐troop aggression levels when foraging in garbage compared to other foraging habitats. Second, monthly rates of aggression were a significant predictor of monthly number of injuries in troops. Finally, injured individuals had a 75% incidence of clinical tuberculosis (TB) compared to a 0% incidence in visibly uninjured mongooses during the study period. Our data suggest that mongoose troops that forage in garbage may be at greater risk of acquiring TB by incurring injuries that may allow for pathogen invasion. Our study suggests the need to consider the indirect effects of garbage on behavior and wildlife health when developing waste management approaches in human‐modified areas.     

Systematics of the Southeast Asian mongooses (Herpestidae,Carnivora): solving the mystery of the elusive collared mongoose and Palawan mongoose

Although recent molecular studies have clarified the phylogeny of mongooses, the systematics of the Southeast Asian species was incomplete as the collared mongoose Urva semitorquata and some debatable taxa (Hose's mongoose, Palawan mongoose) were missing in the analyses. We sequenced three mitochondrial (cytochrome b, ND2, control region) and one nuclear (beta‐fibrinogen intron 7) fragments of the Southeast Asian mongooses to clarify the systematic position of the different species and populations occurring in this region. Our results showed that the collared mongoose is closely related to the crab‐eating mongoose Urva urva, these two species forming a sister‐group to the short‐tailed mongoose Urva brachyura. Despite Sumatran collared mongooses having a peculiar orange phenotype, we showed that they exhibited very little genetic divergence to individuals from Borneo. In contrast, the populations of the short‐tailed mongoose from Borneo were strongly divergent to those from Peninsular Malaysia and Sumatra, and these might represent separate species. Within the crab‐eating mongoose, we observed little geographical genetic structure. Our study suggests that Hose's mongoose is not a valid species. The Palawan mongooses did not cluster with the other populations of the short‐tailed mongoose; they were closer to the collared mongoose and should be included in this species. © 2014 The Linnean Society of London     

The effectiveness of delineating ecoregions in the Kyushu region of Japan to establish environmental indicators

Throughout Japan, numerous restoration projects and efforts to conserve the river environment are underway. However, in spite of such efforts, effective measures to conserve the river ecosystem or post-evaluation of restoration projects remain insufficient due to a lack of environmental indicators. In many European countries and the United States, a number of biological indicators have been developed and adapted. However, it appears to be difficult to directly apply these indicators to Japan, because its biota is finely classified according to its many islands and peninsulas. The ultimate goal of this study is to comprehensively evaluate indicators of aquatic biodiversity from both physical and biological aspects. We divided the Kyushu region in Japan into several ecoregions as a preliminary step to establish an indicator. We delineated the ecoregions of the Kyushu region using the fish fauna data of 21 rivers within the Kyushu region. Presence–absence (0/1) data for each fish species were used to run a two-way indicator species analysis (TWINSPAN analysis). As a result, the Kyushu region was divided into four ecoregions (A: northwest Kyushu, B1: northeast Kyushu, B2: south Kyushu, and C: Amami-Oshima Island). Each ecoregion was characterized by the following fish species: (A) Cyprinidae, in particular Acheilognathinae, is abundant; (B1) Gobiidae is abundant, while Cyprinidae such as Tanakia limbata (not confirmed in B2) are also present; (B2) Gobiidae is abundant, while Rhingobius sp. DA and Rhingobius sp. CO (not confirmed in B1) are present. These results indicate that the fish fauna of the Kyushu region is finely delineated, and that an assessment standard for biological integrity should be established, based on differences in fish fauna.     

A skeleton‐less sponge of Caribbean mangroves: invasive or undescribed?

Recent surveys of sponges occurring on Caribbean mangrove roots demonstrated the presence of a skeleton‐less sponge of the genus Halisarca, very similar in its morphology to the temperate H. dujardinii. This study evaluated the possibility that the mangrove sponge was actually H. dujardinii that had been introduced into the Caribbean mangroves. Detailed histology revealed differences between the mangrove sponge and H. dujardinii in cuticle thickness, and in characteristics of the choanocytes, spherulous, and granular cells. Also, phylogenetic reconstruction and genetic distance estimates based on cytochrome oxidase I gene sequences clearly differentiated the mangrove Halisarca sp. from H. dujardinii. Therefore, we rejected the hypothesis of the invasion of H. dujardinii, recognizing instead the mangrove Halisarca sp. as a new species and naming it H. restingaensis sp. nov. Estimated levels of genetic variation in the ribosomal internal transcribed spacers indicated that populations of H. restingaensis sp. nov. are highly differentiated between Venezuela and Panama (F_st=0.71). This level of population differentiation is consistent with the short larval competence period that is common in members of the genus Halisarca.     

Origins of recently re‐established and newly discovered populations of the endangered butterfly Shijimiaeoides divinus (Lepidoptera: Lycaenidae) in Oita Prefecture,Japan

The endangered butterfly Shijimiaeoides divinus was believed to have been extirpated from Oita Prefecture, Kyushu, Japan, but was rediscovered in Taketa in recent years. This population is considered to have re‐established as a result of natural dispersal from Kumamoto, a neighboring prefecture located to the west of Oita. Furthermore, another population was recently found in Yufu, Oita Prefecture, which is an area where the species had never been recorded. To elucidate the origins of these two populations newly found from Oita Prefecture, their DNA sequences of the mitochondrial cytochrome c oxidase subunit I (COI) gene were compared with those of other S. divinus populations from Kumamoto Prefecture, Honshu and Korea. The results supported the hypothesis that the Taketa population originated from Kumamoto Prefecture. However, it was not clear whether this population originated from the natural dispersal or deliberate release of individuals. It was also found that the Yufu population was not established by the deliberate release of individuals from Honshu or Korea; however, it remained unclear whether the population of S. divinus was native to Yufu, or originated from other localities in Kyushu.