New C-band protocol by heat denaturation in the presence of formamide

C-banding techniques detect the presence of constitutive heterochromatin, which is usually located in centromeric regions of chromosomes in the majority of analysed species. The common method for C-banding used over the last 30 years involves treatment with a mild alkali barium hydroxide 5% Ba(OH)2 at 50 degrees C for 5-15 min and subsequent incubation in salt solution (2 x SSC at 60 degrees C for 1 h). We here present a new, easy and reliable technique for C-banding, which basically involves heat denaturation of chromosomal DNA in the presence of formamide and incubation in 2 x SSC at room temperature.     

Comparisons between C-banding Patterns on Root Tip Chromosomes of Different Cultivars in Maize( Zea mays)

The technique of Giemsa banding, C-banding patterns on the root tip chromosomes and the chromocentres of interphase nuclei with three eultivars (Dai Zi Bai, Qun Dan 105 and 2×6) of maize were studied. The results are as follows: 1. After fixation and treatment in a saturated solution of barium hydroxide the preparations were incubated in 0.5×SSC, I×SSC, 3×SSC, 4×SSC or distilled water respectively forⅠ h at 60 ℃ and the other steps in C-banding procedure were not changed so as to find the optimum saline concentration for Giemsa banding in maize. The experimental results shown that 0.5×SSC was the best. But bands could not produced very well by treating samples in distilled water. 2. There were terminal, subterminal and centric bands in Dai Zi Bai and Qun Dan 105. The C-banding patterns on the root tip chromosomes of these two cultivars were different from each other. Qun Dan 105 had 10 prominent bands in total, while Daf Zi Bai had 7. The banding patterns of each chromosome were described in detail. 3. The average chromocentres per cell in Dai Zi, Qun Dan 105 and cultivar 2×6 were 7.1, 10.9 and 7.2 respectively. Their prominent band numbers on the chromosomes were 7, 10 and 8 correspondingly. It seems that the number of C-bands on the chromosomes is close to that of chromocentres.     

Ultrastructure of the centrometric regions of mouse chromosomes in metaphase chromosomes and interphase nuclei]

The chromatin ultrastructure was studied in the centromeric region of mitotic chromosomes and in interphase nuclei of mouse cells after differential staining on C-band. A new method is suggested to study centromeric region of chromosomes treated by the Giemsa banding technique. Fibers of chromosomes appeared to be packed denser in the centromeric regions of mitotic chromosomes than in arms. The disposition of chromatin fibers in the centromeric chromocentres of interphase nuclei is the same as in the centromeric regions of mitotic chromosomes.     

Heterochromatic banding pattern in two Brazilian populations of Aedes aegypti

We analysed samples of Aedes aegypti from São José do Rio Preto and Franca (Brazil) by C‐banding and Ag‐banding staining techniques. C‐banding pattern of Ae.aegypti from São José do Rio Preto examined in metaphase cells differed from Franca. The chromosomes 2, 3 and X showed centromeric C‐bands in both populations, but a slightly stained centromeric band in the Y chromosome was observed only in São José do Rio Preto. In addition, the X chromosome in both populations and the Y chromosome of all individuals from São José do Rio Preto showed an intercalary band on one of the arms that was absent in Franca. An intercalary, new band, lying on the secondary constriction of chromosome 3 was also present in mosquitoes of both populations. The comparison of the present data with data in the literature for Ae.aegypti from other regions of the world showed that they differ as to the banding pattern of sex chromosomes and the now described intercalary band in chromosome 3. The observations suggested that the heterochromatic regions of all chromosomes are associated to constitute a single C‐banded body in interphase cells. Ag‐banding technique stained the centromeric regions of all chromosomes (including the Y) and the intercalary C‐band region of the X chromosome in both populations. As Ae.aegypti populations are widespread in a great part of the world, the banding pattern variations indicate environmental interactions and may reveal both the chromosome evolutionary patterns in this species and the variations that may interfere with its vector activity.     

Giemsa banding,quinacrine fluorescence and DNA-replication in chromosomes of cattle (Bos taurus)

Almost all the 30 chromosome pairs of cattle can be identified by their banding patterns made be visible by a Giemsa staining technique described previously. The banding pattern of the X chromosome shows striking similarities with the banding pattern of the human X chromosome. — The centromeric region of the acrocentric autosomes contains a highly condensed DNA. This DNA is removed by the Giemsa staining procedure as can be shown by interference microscopic studies. If the chromosomes are stained with quinacrine dihydrochloride these centromeric regions are only slightly fluorescent. — Autoradiographic studies with ³H-thymidine show that the DNA at the centromeric regions starts and finishes its replication later than in the other parts of the chromosomes.     

Giemsa banding of meiotic chromosomes

Applying a Giemsa staining technique to the meiotic chromosomes of Anemone blanda demonstrates that Giemsa bands similar to those seen in the mitotic chromosomes are discernible at all the principal stages of meiosis. The bands are not a product of the Giemsa procedure since they can be seen in unstained preparations using phase-contrast optics as chromocentres in interphase nuclei and as condensed regions in prophase chromosomes. That the bands seem to be permanent features of the nucleus, whether it is dividing or otherwise is an important consideration for understanding their nature and function. Bands and chiasmata do not coincide indicating on the one hand that chiasmata are not responsible for differences in banding patterns and on the other hand that the conservation of bands is an indication that they are either inert regions or specialised regions with considerable adaptive significance. These alternatives can only be resolved by genetical studies of the banding phenomena.     

Two types of constitutive heterochromatin in the chromosomes of some Fritillaria species

A Giemsa banding technique has been used to study C-banding in mitotic chromosomes in root tips of Fritillaria graeca, F. crassifolia and F. rhodocanakis, all diploids (2n=24) belonging to the graeca group. In the first two the C-bands were of two types, diverging in respect of staining regularly and specifically within chromosomes. In one type it was weak, being intermediate between that of intensely stained ones, representing the other class, and the euchromatin. In F. graeca the pale bands were proximally localized and confined to 5 pairs, whereas in F. crassifolia they occurred only in the 4 M chromosomes, in each within the centromeric constriction as a large inclusion. The interphase nuclei of both species contained pale and heavily stained chromocentres. No pale ones occurred in such nuclei of F. rhodocanakis. The probability is discussed that the two classes of C-band represent distinct types of heterochromatin, differing both in respect of condensation throughout the whole mitotic cycle and in the repetitive DNA sequences they most likely contain. In all 3 species pairs of Giemsa-positive centromeric dots, representing the centromeres, were masked both by proximally or centromerically localized bands, irrespective of the class of heterochromatin they represented.     

Computer assisted karyotype analysis of Pyrrhopappus carolinianus

With the help of Computer Aided Karyotyping procedures, Ag-NOR staining and C-banding techniques, the karyotype of Pyrrhopappus carolinianus (Asteraceae, Lactuceae) has been studied. The species has 2n=12 chromosomes. Silver staining reveals that the two shortest pairs of chromosomes possess NOR's. On the basis of chromosome length and centromere position, only the longest chromosome pair and the satellite chromosomes can be identified. Two types of C-banding can be obtained, dependent on the temperature of the hydrochloric acid hydrolysis of the root tips. Hydrolysis at 60°C results exclusively in centromeric bands, whereas a treatment at room temperature reveals a pattern of intercalary bands. A computer assisted analysis of the intercalary banding pattern resulted in the construction of schematic representation of the average C-banding pattern. This banding pattern allows an easy identification of each of the chromosome pairs.     

Karyomorphology of six taxa in Chrysanthemum sensu lato (Anthemideae) in Egypt and their genetic relationships by Giemsa C‐banding

Abstract Giemsa C‐banding was applied to the chromosome complements of six diploid species belonging to six genera in Chrysanthemum sensu lato (Anthemideae) distributed in Egypt. Four types of C‐banding distribution were observed in the taxa as follows: (i) negative C‐banding in Anacyclus monanthos (L.) Thell.; (ii) all bands in terminal regions in Achillea fragrantissima (Forssk.) Sch. Bip, which showed 32 bands on 18 chromosomes; (iii) all eight bands at centromeric regions on eight chromosomes in Matricaria recutita L.; and (iv) bands at terminal and centromeric regions in Brocchia cinerea Vis. (12 terminal and six centromeric bands on 12 chromosomes), Cotula barbata DC. (four terminal, six centromeric, and eight short arm bands on 16 chromosomes), and Glebionis coronaria (L.) Cass. ex Spach. (eight terminal on the short arms and four large bands in centromeric regions on 12 chromosomes).     

Banding pattern observed in human chromosomes by the modified BSG technique

Summary A successful modification of the BSG technique to reveal C and R bands simultaneously in human chromosomes is described. Conventional air dried preparations were treated first with 0.1 N HCl for 30 min at room temperature, then denatured in freshly prepared 3% aqueous solution of Ba(OH)₂8H₂O for 10 min at 50°C. After rinsing, the slides were incubated for 1 h at 60°C in 2xSSC, and stained with Giemsa. The striking intense staining pattern could be observed in chromosome No. 19.The factors involved in the present technique were analyzed changing the concentrations of the reagents and the treatment time. It was evident that R, T and C bands correspond to a progressive destruction of the chromosome sructure mainly by the Ba(OH)₂8H₂O solution.     

An analysis of the technical variables in the production of C bands

Numerous combinations, concentrations, pH's and durations of HCl, NaOH and SSC treatments were tested for the purpose of developing an improved C banding technique for human metaphase chromosomes. Methods of slide preparation, as they affect C banding were also evaluated. — HCl and SSC treatment used separately, for all times and concentrations tested, gave no C banding. All treatment sequences which included an NaOH exposure gave at least some C banding, but also gave considerable swelling and distortion. Surprisingly, the best results were obtained from heat-dried preparations exposed to 0.2 N HCl at 25° C for 15 minutes, no NaOH and subsequently incubated in 2xSSC, pH=7.0 at 62–65° C for 18–24 hours. This technique is now being used routinely, following a G banding technique for homologue identification, to monitor C band variation in human chromosomes. — The pH of the 2xSSC incubation solution was found to be important. Slides treated as above with HCl, but with 2xSSC, pH=6.0 gave only G banding; HCl and 2xSSC, pH=8.0 gave C banding, but considerable chromosome swelling and poor uptake of stain. — Air- or ignition-dried preparations, with the HCl and 2xSSC treatment appeared undertreated and gave a mixture of G and C banding. A brief (30 second) exposure to 0.07 N NaOH between the HCl and 2xSSC steps is recommended. These results are in support of DNA-protein interaction and/or loss rather than denaturation-renaturation as a likely mechanism for C band production.     

DNA loss during C-banding of chromosomes of Lilium longiflorum

Root tip chromosomes were uniformly labelled with ³H-thymidine and replicate squashes were made. One set was untreated, one incubated in Ba(OH)₂ solution, and a further set treated sequentially in Ba(OH)₂ and hot saline-citrate (2 × SSC) to reveal C-bands. All replicates were autoradiographed and comparative grain counts made. Differences in grain numbers per metaphase cell showed that Ba(OH)₂ extracted 40% of label, and that a further 23% was lost in the subsequent SSC incubation. The distribution of grains was mapped along a sample of each of five individually-recognisable chromosomes at the three treatment stages. Within each chromosome, the number of grains per segment did not differ significantly from a random distribution. This was true for all five chromosomes at all three stages of treatment, whether or not the regions were C-banded. — We conclude that DNA extraction occurs progressively during C-banding in Lilium, but that C-bands are not dark because of their relatively high retention of DNA.     

Immunological visualization of 5-methylcytosine-rich regions in Indian Muntjac metaphase chromosomes

Regions rich in 5-methylcytosine were localized in male metaphase chromosomes of the Indian muntjac deer (Muntiakus muntjak). Chromosomes were ultraviolet irradiated and subsequently photooxidized in the presence of methylene blue to induce maximum DNA denaturation. Following treatment with anti 5-methylcytosine antibody (anti 5-MeC), regions of antibody binding were visualized by an immunofluorescence or immunopreoxidase staining procedure. All chromosomes showed some level of antibody binding along their length and at centromeric regions, with intense binding evident in the centromere of chromosome 3 and the elongated centromeric "neck" of chromosome 3-X. The Y chromosome displayed low levels of antibody binding. The banding pattern observed with anti 5-MeC is the reverse of that obtained by quinacrine staining.     

The effect of chromosome banding techniques on the proteins of isolated chromosomes

Experiments were undertaken to determine the effect of various chromosome banding treatments on the histone and nonhistone proteins of isolated, fixed, air-dried metaphase chromosomes. Chromosome preparations were exposed to G-banding (SSC, urea, NaCl-urea, or trypsin), R-banding (Earle's balanced salt solution), and C-banding (NaOH or Ba(OH)₂) treatments, and the extracted and residual proteins were examined by SDS polyacrylamide gel electrophoresis. The results indicate that each of the banding treatments induce characteristic alterations in the chromosomal proteins. The residual proteins left in chromosomes after the diverse G-banding treatments were generally similar to one another, indicating that treatments inducing the same type of banding have similar effects on the chromosomal proteins. This was also true for the two different C-banding treatments. On the other hand, the residual protein patterns seen after the G-banding treatments were strikingly different from those seen after R-banding, which in turn differed from those seen after C-banding. The treatments inducing different types of banding therefore produce markedly different effects on the chromosomal proteins. These protein alterations may have an important influence on the induction of chromosome bands.     

Analysis of DNA replication patterns of human fibroblast chromosomes the replication map

Summary A replication map of human fibroblast chromosomes from two diploid human female fibroblast lines, 46,XX and 46,X, del (X)(q13), was determined using the fluorescent plus Giemsa (FPG) technique. Each chromosome was found to stain homogeneously dark when thymidine was incorporated for the entire S phase of that particular cell. As the duration of exposure to thymidine progressively decreased by increasing the incubation time in bromodeoxyuridine, the staining intensity of chromosomes decreased and, concurrently, gaps in the staining began to appear. These gaps coincide with R bands and represent the earliest areas to complete DNA synthesis. As these areas widen and increase in frequency, first Q and G bands appear, and finally C bands.Homologous X chromosomes were easily differentiated by either a comparison of the bands present or their staining intensity. The replication kinetics of the structurally abnormal heterocyclic X chromosome were very similar to those of the normal heterocyclic X chromosome. The X chromosome with deletion of a portion of the long arm was consistently late in replication.     

Heterochromatin and chromosomal aberration in microtus agrestis: role of chromosomal association

Mitomycin C (MC) -induced chromatid aberrations among the chromosomes of Microtus agrestis are preferentially localized in the constitutive heterochromatic regions, i.e., major part of the sex chromosomes and the centromeric regions of the autosomes. In the sex chromosomes, intrachanges predominate, while interchanges between the two X chromosomes are very rare. This pattern of distribution of different types of aberrations is interpreted as due to the individual chromocentres that are formed by the two X chromosomes in the interphase.     

Heterochromatin and rDNA sites distribution in the holocentric chromosomes of Cuscuta approximata Bab. (Convolvulaceae).

Cuscuta is a widely distributed genus of holoparasitic plants. Holocentric chromosomes have been reported only in species of one of its subgenera (Cuscuta subg. Cuscuta). In this work, a representative of this subgenus, Cuscuta approximata, was investigated looking for its mitotic and meiotic chromosome behaviour and the heterochromatin distribution. The mitotic chromosomes showed neither primary constriction nor Rabl orientation whereas the meiotic ones exhibited the typical quadripartite structure characteristic of holocentrics, supporting the assumption of holocentric chromosomes as a synapomorphy of Cuscuta subg. Cuscuta. Chromosomes and interphase nuclei displayed many heterochromatic blocks that stained deeply with hematoxylin, 4',6-diamidino-2-phenylindole (DAPI), or after C banding. The banded karyotype showed terminal or subterminal bands in all chromosomes and central bands in some of them. The single pair of 45S rDNA sites was observed at the end of the largest chromosome pair, close to a DAPI band and a 5S rDNA site. Two other 5S rDNA site pairs were found, both closely associated with DAPI bands. The noteworthy giant nuclei of glandular cells of petals and ovary wall exhibited large chromocentres typical of polytenic nuclei. The chromosomal location of heterochromatin and rDNA sites and the structure of the endoreplicated nuclei of C. approximata seemed to be similar to those known in monocentric nuclei, suggesting that centromeric organization has little or no effect on chromatin organization.     

Heterochromatin composition and nucleolus organizer activity in four canid species

Sequential staining with a counterstain-contrasted fluorescent banding technique (chromomycin A3-distamycin A-DAPI) revealed the occurrence of distamycin A-4,6-diamidino-2-phenylindole (DA-DAPI) staining heterochromatin in the centromeric regions of chromosomes 33, 36, 37, and 38 in the wolf (Canis lupus pallipes) and of chromosomes 13, 16, and 23 in the blue fox (Alopex lagopus). The red fox (Vulpes vulpes) lacked such regions. Staining with DAPI--actinomycin D produced a QFH-type banding pattern with clearcut differences in the staining behaviour of DA-DAPI positive regions between these three canid species. Staining with the fluorochrome D 287/170 did not preferentially highlight any of the DA-DAPI positive regions in any of them. Counterstain-enhanced chromomycin A3 R-banding and studies of nucleolus organizer region location and activity confirmed a close relationship between the karyotype of the wolf and the domestic dog. Few heterochromatic marker bands were encountered in these two species, but heterochromatin polymorphism was evident in the blue fox.     

Time-dependent AluI action on human chromosomes

We have analyzed the pattern of AluI digestion over time on human chromosomes in order to monitor the evolution of the in situ enzyme action. Short treatments followed by Giemsa staining produce a G-like banding effect, whereas longer treatments produce a C-like banding pattern. However, when Propidium iodide staining is used, it reveals a uniform bright fluorescence after short AluI digestions and C bands when longer treatments are developed. We propose that C banding is the result of a uniform DNA removal in non centromeric regions taking place after a critical time point, the initial G like banding being produced by changes in the DNA-proteins interactions.     

Trypsin-orcein banding in plant chromosomes.

A convenient and quick method using trypsin-orcein for banding plant chromosomes (O-banding) is suggested. The technique is directly applicable to meristematic tissues (e.g. root tips) and involves the treatment of root tips with 1-2% solution of trypsin either in buffer or in 0.5 N HCl for 5-10 minutes at 37 C or for 30-60 minutes near 0 C followed by staining with 1.5% acetic orcein: 1 N HCl (19:1). Dark staining bands are reproducible and species specific. These bands possibly represent specific DNA-protein-dye interaction.