Residence time,native range size,and genome size predict naturalization among angiosperms introduced to Australia

Although critical to progress in understanding (i) if, and (ii) at what rate, introduced plants will naturalize and potentially become invasive, establishing causal links between traits and invasion success is complicated by data gaps, phylogenetic nonindependence of species, the inability to control for differences between species in residence time and propagule pressure, and covariance among traits. Here, we focus on statistical relationships between genomic factors, life history traits, native range size, and naturalization status of angiosperms introduced to Australia. In a series of analyses, we alternately investigate the role of phylogeny, incorporate introduction history, and use graphical models to explore the network of conditional probabilities linking traits and introduction history to naturalization status. Applying this ensemble of methods to the largest publicly available data set on plant introductions and their fates, we found that, overall, residence time and native range size best predicted probability of naturalization. Yet, importantly, probability of naturalization consistently increased as genome size decreased, even when the effects of shared ancestry and residence time in Australia were accounted for, and that this pattern was stronger in species without a history of cultivation, but present across annual–biennials, and herbaceous and woody perennials. Thus, despite introduction biases and indirect effects of traits via introduction history, across analyses, reduced genome size was nevertheless consistently associated with a tendency to naturalize.     

Geographic range velocity and its association with phylogeny and life history traits in North American woody plants

The geographic ranges of taxa change in response to environmental conditions. Yet whether rates of range movement (biotic velocities) are phylogenetically conserved is not well known. Phylogenetic conservatism of biotic velocities could reflect similarities among related lineages in climatic tolerances and dispersal‐associated traits. We assess whether late Quaternary biotic velocities were phylogenetically conserved and whether they correlate with climatic tolerances and dispersal‐associated traits. We used phylogenetic regression and nonparametric correlation to evaluate associations between biotic velocities, dispersal‐associated traits, and climatic tolerances for 28 woody plant genera and subgenera in North America. The velocities with which woody plant taxa shifted their core geographic range limits were positively correlated from time step to time step between 16 and 7 ka. The strength of this correlation weakened after 7 ka as the pace of climate change slowed. Dispersal‐associated traits and climatic tolerances were not associated with biotic velocities. Although the biotic velocities of some genera were consistently fast and others consistently slow, biotic velocities were not phylogenetically conserved. The rapid late Quaternary range shifts of plants lacking traits that facilitate frequent long‐distance dispersal has long been noted (i.e., Reid's Paradox). Our results are consistent with this paradox and show that it remains robust when phylogenetic information is taken into account. The lack of association between biotic velocities, dispersal‐associated traits, and climatic tolerances may reflect several, nonmutually exclusive processes, including rare long‐distance dispersal, biotic interactions, and cryptic refugia. Because late Quaternary biotic velocities were decoupled from dispersal‐associated traits, trait data for genera and subgenera cannot be used to predict longer‐term (millennial‐scale) floristic responses to climate change.     

Macroecology of North American suckers (Catostomidae): tests of Bergmann's and Rapoport's rules

Discerning spatial macroecological patterns in freshwater fishes has broad implications for community assembly, ecosystem dynamics, management, and conservation. This study explores the potential interspecific covariation of geographic range (Rapoport's rule) and body size (Bergmann's rule) with latitude in North American sucker fishes (Cypriniformes: Catostomidae). While numerous tests of Rapoport's and Bergmann's rules are documented in the literature, comparatively few of these studies have specifically tested for these patterns, and none have incorporated information reflecting shared ancestry into analyses of North American freshwater fish through a hierarchical model. This study utilized a hierarchical modeling approach with Bayesian inference to evaluate the role that evolution has played in shaping these distributional corollaries. Rapoport's rule was supported at the tribe level but not across family and subfamily groupings. Particularly within the Catostominae subfamily, two tribes reflected strong support for Rapoport's rule while two suggested a pattern was present. Conversely, Bergmann's rule was not supported in Catostomidae. This study provides additional information regarding the pervasiveness of these “rules” by expanding inferences in freshwater fishes and specifically addressing the potential for these macroecological patterns to play a role in the distribution of the understudied group Catostomidae.     

Patterns of nucleotide variation and reproductive isolation between a Mimulus allotetraploid and its progenitor species

Here we report our characterization of a widespread, highly selfing Mimulus allotetraploid formed by interspecific hybridization between M. nasutus and M. guttatus. Nucleotide variation at two nuclear loci (mCYCA and mAP3) within and among tetraploid populations resolves two haplotype clusters for each locus: one shares near identity with sequences from M. nasutus and the other group shares substantial variation with M. guttatus. With respect to the two loci studied, each allotetraploid individual is a 'fixed heterozygote' carrying sequences from both clusters. Moreover, mCYCA variation is consistent with at least two evolutionary origins for the Mimulus allotetraploid. We show that the allotetraploid is strongly reproductively isolated from M. nasutus and M. guttatus; interploidy crosses produce almost no viable seeds. By extension, we infer strong triploid block and argue that Mimulus allotetraploid formation might proceed in one step via the union of unreduced gametes in an M. nasutus-M. guttatus F(1) hybrid. We also discuss the potential roles of mating system and flowering asynchrony in allotetraploid establishment.     

31种木本植物开花物候与系统发育的关系

植物物候通常被认为是由环境因素,如降水、温度和日照长度所决定,然而环境因素是否是物候唯一的决定因素仍然存在很大争议。谱系结构表征了植物在进化上的顺序,该发育时序是否对物候产生影响,当前仍然未知。在调查2016年春季新疆乌鲁木齐市最常见的31种木本植物的初始开花时间、败花时间和开花持续时间的基础上,通过分析植物开花物候的分布特征、开花物候在乔灌木间的差别、以及植物谱系距离与开花物候距离间的关系,试图揭示植物的开花物候和物种谱系(进化)顺序间的关系。结果表明:(1)新疆乌鲁木齐市31种木本植物的初始开花时间为4月18日±9d、败花时间为5月5日±12d、开花持续时间为(16±8)d;(2)乔木的初始开花时间和败花时间的标准差分别均低于灌木,乔木开花物候相对灌木更稳定;(3)乔木的初始开花和败花时间均显著早于灌木(P0.05),但开花持续时间在两者间未有显著性差异(P0.05);(3)31种木本植物间的初始开花时间距离、败花时间距离和开花持续时间距离均与物种谱系距离存在显著线性回归关系(P0.05)。综上可知:乔灌木在垂直空间上的分化使得木本植物的开花物候在植物生活型间存在不同。对植物的开花物候,除已被证明的降水、温度和日照长度等环境因素的影响外,物种进化顺序也可能造成了它在植物种间、时间和空间上的变异。     

Speciation by genome duplication: Repeated origins and genomic composition of the recently formed allopolyploid species Mimulus peregrinus

Whole genome duplication (polyploidization) is a mechanism of “instantaneous” species formation that has played a major role in the evolutionary history of plants. Much of what we know about the early evolution of polyploids is based upon studies of a handful of recently formed species. A new polyploid hybrid (allopolyploid) species Mimulus peregrinus, formed within the last 140 years, was recently discovered on the Scottish mainland and corroborated by chromosome counts. Here, using targeted, high‐depth sequencing of 1200 genic regions, we confirm the parental origins of this new species from M. x robertsii, a sterile triploid hybrid between the two introduced species M. guttatus and M. luteus that are naturalized and widespread in the United Kingdom. We also report a new population of M. peregrinus on the Orkney Islands and demonstrate that populations on the Scottish mainland and Orkney Islands arose independently via genome duplication from local populations of M. x robertsii. Our data raise the possibility that some alleles are already being lost in the evolving M. peregrinus genomes. The recent origins of a new species of the ecological model genus Mimulus via allopolyploidization provide a powerful opportunity to explore the early stages of hybridization and genome duplication in naturally evolved lineages.     

Influence of phylogenetic scale on the relationships of taxonomic and phylogenetic turnovers with environment for angiosperms in China

We aim to assess the influence of phylogenetic scale on the relationships of taxonomic and phylogenetic turnovers with environment for angiosperms in China. Specifically, we quantify the effects of contemporary climate on β‐diversity at different phylogenetic scales representing different evolutionary depths of angiosperms. We sampled a latitudinal gradient and a longitudinal gradient of angiosperm assemblages across China (each ≥3400 km). Species composition in each assemblage was documented. Three metrics of β‐diversity (β_sim.tax measuring taxonomic β‐diversity; β_sim.phy and D_pw measuring tip‐ and basal‐weighted phylogenetic β‐diversity, respectively) were quantified among assemblages at sequential depths in the evolutionary history of angiosperms from the tips to deeper branches. This was done by slicing the angiosperm phylogenetic tree at six evolutionary depths (0, 15, 30, 45, 60, and 75 million years ago). β‐diversity at each evolutionary depth was related to geographic and climatic distances between assemblages. In general, the relationship between β‐diversity and climatic distance decreased from shallow to deep evolutionary time slice for all the three metrics. The slopes of the decreasing trends for β_sim.tax and β_sim.phy were much steeper for the latitudinal gradient than for the longitudinal gradient. The decreasing trend of the strength of the relationship was monotonic in all cases except for D_pw across the longitudinal gradient. Geographic distance between assemblages explained little variation in β‐diversity that was not explained by climatic distance. Our study shows that the strength of the relationship between β‐diversity and climatic distance decreases conspicuously from shallow to deep evolutionary depth for the latitudinal gradient, but this decreasing trend is less steep for the longitudinal gradient than for the latitudinal gradient, which likely reflects the influence of historical processes (e.g., the collision of the Indian plate with the Eurasian plate) on β‐diversity.     

Cytotaxonomy and geographic distribution of cytotypes of species of the South American genus Chrysolaena (Vernonieae,Asteraceae)

Understanding speciation and biodiversity patterns in plants requires knowledge of the general role of climate in allowing polyploids to escape competition and persist with their diploid progenitors. This is a particularly interesting issue in widespread species that present multiple ploidy levels and occur across a heterogeneous environment. Chrysolaena (Vernonieae, Asteraceae) is a cytogenetically very diverse genus, with significant interspecific and intraspecific ploidy level variation and with continuous distribution across South America. No previous studies have summarized chromosome count data of Chrysolaena or addressed the cytogeography of the genus. Ploidy level of Chrysolaena species was determined by chromosome counting during mitosis and/or meiosis; the geographic distribution of cytotypes was examined and the correlations between the distribution of particular cytotypes and current ecological conditions were evaluated. A total of 43 new chromosome counts and five ploidy levels (2x, 4x, 6x, 7x, 8x) were reported. The chromosome number of C. cordifolia (2n = 7x = 70) and a new cytotype for C. propinqua var. canescens (2n = 4x = 40) are reported for the first time. Three geographic areas with high diversity of cytotypes and species were detected. The results obtained do not suggest a clear distribution pattern that depends on climatic factors for Chrysolaena populations. However, a geographic pattern was identified in the distribution of ploidy levels, with diploid species presenting a more restricted distribution than polyploid species.     

Measuring range sizes of South-East Asian hawkmoths (Lepidoptera: Sphingidae): effects of scale, resolution and phylogeny

Aim  The effects of resolution and spatial extent on range measures were explored in estimates of the geographic distribution of tropical hawkmoths. Furthermore, data were tested for phylogenetic autocorrelation.
Location  South-East Asia.
Methods  Various range measures, such as geographic information system (GIS)-supported range estimates, minimum convex polygons, latitudinal and longitudinal extents, and their products, were derived from original distribution records and compared to each other. A taxonomic classification of the species was used to analyse phylogenetic effects on range sizes.
Results  Range size measures exhibit a strongly right-skewed frequency distribution with many geographically restricted species and few widespread taxa. Rankings from GIS-supported, comprehensive range size estimates do not deviate greatly from more crude measurements of lower resolution. Comprehensive ranges and ranges within South-East Asia are correlated strongly, but already at this rather large scale the ranking of species changes considerably. Other measures of occupancy with an increasingly more localized consideration of 'range' show decreasing strengths of correlation. We found a weak, but significant, autocorrelation in range area data: related groups of species have ranges of similar size.
Main conclusions  Spatial resolution did not affect range ranking greatly in our data. However, macroecological studies based only on parts of species' ranges must be viewed critically, particularly if their extent is small compared to comprehensive ranges. Phylogenetic non-independence of range size data must be considered in comparative analyses.     

Climate change and the outbreak ranges of two North American bark beetles

Abstract

• 1 One expected effect of global climate change on insect populations is a shift in geographical distributions toward higher latitudes and higher elevations. Southern pine beetle Dendroctonus frontalis and mountain pine beetle Dendroctonus ponderosae undergo regional outbreaks that result in large‐scale disturbances to pine forests in the south‐eastern and western United States, respectively.
• 2 Our objective was to investigate potential range shifts under climate change of outbreak areas for both bark beetle species and the areas of occurrence of the forest types susceptible to them.
• 3 To project range changes, we used discriminant function models that incorporated climatic variables. Models to project bark beetle ranges employed changed forest distributions as well as changes in climatic variables.
• 4 Projected outbreak areas for southern pine beetle increased with higher temperatures and generally shifted northward, as did the distributions of the southern pine forests.
• 5 Projected outbreak areas for mountain pine beetle decreased with increasing temperature and shifted toward higher elevation. That trend was mirrored in the projected distributions of pine forests in the region of the western U.S. encompassed by the study.
• 6 Projected outbreak areas for the two bark beetle species and the area of occurrence of western pine forests increased with more precipitation and decreased with less precipitation, whereas the area of occurrence of southern pine forests decreased slightly with increasing precipitation.
• 7 Predicted shifts of outbreak ranges for both bark beetle species followed general expectations for the effects of global climate change and reflected the underlying long‐term distributional shifts of their host forests.

     

浙江古田山亚热带常绿阔叶林开花物候:气候因素、系统发育关系和功能性状的影响

植物的开花物候受气候因素、植物系统发育关系和功能性状的影响。然而当前植物开花物候研究中未见同时考虑这3个因素的报道。为了解它们相互之间的影响, 本研究利用中国东部地区浙江省古田山国家级自然保护区亚热带常绿阔叶林24 ha大样地(GTS; 118°03′50′′-118°11′12.2′′ E, 29°10′19′′-29°17′41′′ N)设置的130个种子雨收集器5年的开花数据检验这3个因素对开花的影响。结果表明, 古田山植物的开花高峰期集中在5月, 群落开花格局明显受温度和降雨的影响。利用植物DNA条形码数据研究发现, 植物间系统发育关系对古田山植物开花时间有显著影响, 亲缘关系近的物种开花时间更相近。植物的平均开花时间受最大树高的影响, 但不受传粉方式、花色、种子质量和扩散方式的影响。该研究结果说明气候因素、植物系统发育关系和功能性状都可能影响植物开花物候格局, 同时考虑这3个因素能够帮助我们更好地理解开花物候格局。     

脊椎动物基因组与基因复制研究进展

脊椎动物的出现是动物进化历史上一次质的飞跃.由于所有的脊椎动物在其胚胎发育中都呈现连续的解剖学特征,因此过去很多学者都根据现存脊椎动物的形态特征和在其发育过程中的解剖学特征假想原始脊椎动物,并推导其进化过程和起源.近年来的研究表明,通过对脊椎动物和与之亲缘关系接近的物种之间进行基因家族、染色体结构分析,可以对脊椎动物进化提供很多线索和证据.更多的研究表明,脊椎动物在进化过程中很可能发生过整体基因组的复制, 基因和/或基因组的复制可能是引起脊椎动物形体结构复杂性增加的根本原因.因此,基因和基因组的复制正在成为生物进化研究的热点问题.但这两种复制方式中哪一种是产生动物形体结构和功能复杂性增加最重要的原因尚有争论.     

Reconstructing the origins of high-alpine niches and cushion life form in the genus Androsace S.L. (Primulaceae)

Relatively, few species have been able to colonize extremely cold alpine environments. We investigate the role played by the cushion life form in the evolution of climatic niches in the plant genus Androsace s.l., which spreads across the mountain ranges of the Northern Hemisphere. Using robust methods that account for phylogenetic uncertainty, intraspecific variability of climatic requirements and different life-history evolution scenarios, we show that climatic niches of Androsace s.l. exhibit low phylogenetic signal and that they evolved relatively recently and punctually. Models of niche evolution fitted onto phylogenies show that the cushion life form has been a key innovation providing the opportunity to occupy extremely cold environments, thus contributing to rapid climatic niche diversification in the genus Androsace s.l. We then propose a plausible scenario for the adaptation of plants to alpine habitats.     

Genetic markers in Andean Puya species (Bromeliaceae) with implications on plastome evolution and phylogeny

The Andean plant endemic Puya is a striking example of recent and rapid diversification from central Chile to the northern Andes, tracking mountain uplift. This study generated 12 complete plastomes representing nine Puya species and compared them to five published plastomes for their features, genomic evolution, and phylogeny. The total size of the Puya plastomes ranged from 159,542 to 159,839 bp with 37.3%–37.4% GC content. The Puya plastomes were highly conserved in organization and structure with a typical quadripartite genome structure. Each of the 17 consensus plastomes harbored 133 genes, including 87 protein‐coding genes, 38 tRNA (transfer RNA) genes, and eight rRNA (ribosomal RNA) genes; we found 69–78 tandem repeats, 45–60 SSRs (simple sequence repeats), and 8–22 repeat structures among 13 species. Four protein‐coding genes were identified under positive site‐specific selection in Puya. The complete plastomes and hypervariable regions collectively provided pronounced species discrimination in Puya and a practical tool for future phylogenetic studies. The reconstructed phylogeny and estimated divergence time for the lineage suggest that the diversification of Puya is related to Andean orogeny and Pleistocene climatic oscillations. This study provides plastome resources for species delimitation and novel phylogenetic and biogeographic studies.     

Present and potential distribution of invasive garlic mustard (Alliaria petiolata) in North America

Abstract. This paper demonstrates the use of a bioclimatic model mapped over geographical regions as a tool for spatially refined risk assessment for the establishment of non-indigenous plants with invasive behaviour. Drawing on the relationship between plant distribution and climate, the approach uses gridded spatial interpolated monthly means of temperature and precipitation linked with accurate maps of general native distribution ranges to predict the long-term potential of a plant species to invade a certain region. The ascertained potential for establishment is illustrated by the example of garlic mustard ( Alliaria petiolata [M. Bieb.] Cavara & Grande) in North America. The first step is to calculate and visualize the number of populated grid cells along climatic gradients in frequency diagrams for the general native distribution range. Interpretations of the response curves recorded are used for assessing apparent climatic range boundaries. Modelling was gradually optimized based on the results of experience-based interpretations and by examining omission and over-representation errors. The obtained climatic model of the range of A. petiolata shows considerable congruencies with its mapped, native Eurasian range. Degrees of climatic similarity between North America and the native range of A. petiolata were calculated with the help of GIS methodology and were used to assess the regionally different likelihood of establishment in North America of the invasive species under consideration.     

The influence of variability in species trait data on community‐level ecological prediction and inference

Species trait data have been used to predict and infer ecological processes and the responses of biological communities to environmental changes. It has also been suggested that, in lieu of trait, data niche differences can be inferred from phylogenetic distance. It remains unclear how variation in trait data may influence the strength and character of ecological inference. Using species‐level trait data in community ecology assumes intraspecific variation is small in comparison with interspecific variation. Intraspecific variation across species ranges or within populations may lead to variability in trait data derived from different scales (i.e., local or regional) and methods (i.e., mean or maximum values). Variation in trait data across species can affect community‐level relationships. I examined variability in body size, a key trait often measured across taxa. I collected 12 metrics of fish species length (including common and maximum values) for 40 species from literature, online databases, museum collections, and field data. I then tested whether different metrics of fish length could consistently predict observed species range boundary shifts and the impacts of an introduced predator on inland lake fish communities across Ontario, Canada. I also investigated whether phylogenetic signal, an indicator of niche‐conservativism, changed among measures. I found strong correlations between length metrics and limited variation across metrics. Accordingly, length was a consistently significant predictor of the response of fish communities to environmental change. Additionally, I found significant evidence of phylogenetic signal in fish length across metrics. Limited variation in length across metrics (within species), in comparison with variation within metrics (across species), made fish species length a reliable predictor at a community‐level. When considering species‐level trait data from different sources, researchers should examine the potential influence of intraspecific trait variation on data derived by different metrics and at different scales.