Gordonia sp. H52对合成孕激素左炔诺孕酮的降解特性

【背景】合成孕激素左炔诺孕酮因其具有内分泌干扰效应而受到广泛关注,微生物在污染物降解和环境修复方面具有广泛的应用潜力,但目前对左炔诺孕酮在微生物降解中的特性和机理认识仍然有限。【目的】加速左炔诺孕酮污染的治理,亟须分离获取左炔诺孕酮的高效降解菌并探究其降解机制。【方法】以养殖场的废水为接种物,选育出对左炔诺孕酮具有高效降解功能的菌株;基于菌株形态特征、生理生化特征及16S rRNA基因序列分析,确定菌株所属的分类层级;进而通过对左炔诺孕酮的降解动力学进行探究,同时结合菌株全基因组分析及降解产物谱图,确定菌株对左炔诺孕酮的降解特性。【结果】分离获得与Gordonia cholesterolivorans Chol-3的16S rRNA基因序列相似性达99.0%的Gordonia sp. H52,该菌株在18 h内可以实现对0.5 mg/L左炔诺孕酮的100%去除。液相色谱与串联质谱联用分析结果发现,菌株H52降解左炔诺孕酮后产生5种代谢产物,侧链炔基的裂解及脱羟基是该菌降解左炔诺孕酮的主要途径。该菌株还可以同时促进水体中多种合成孕激素的去除,使左炔诺孕酮的去除率由0%提高到91.06%、醋酸炔诺酮的去除率由37%提高到100%、孕二烯酮的去除率由0%提高到88.87%。【结论】Gordonia sp. H52对合成孕激素左炔诺孕酮表现出高效的降解特性,为合成孕激素污染水体的治理与修复提供了宝贵的菌种资源和理论参考。     

阿特拉津降解菌Arthrobacter sp. AG1降解基因研究

菌株Arthrobacter sp. AG1能以4000 mg/L的阿特拉津（AT）为唯一碳源、氮源和能源生长。通过设计特异引物从AG1中扩增出阿特拉津氯水解酶基因trzN的全序列,该基因与已报道的trzN基因序列相似性为99%。AG1菌株中含有两个大于100kb的质粒,Southern杂交结果显示trzN和atzB基因均位于其中较大的一个质粒pAG1上。将AG1菌株在LB液体培养基中转接三代后,发现34%的细菌细胞丢失了降解活性,但却未发现丢失质粒,PCR扩增结果表明突变子丢失了trzN基因,但atzB和atzC基因未丢失,说明降解活性的缺失是trzN基因片段从质粒上丢失的结果,表明trzN基因在环境中存在水平转移现象,暗示菌株AG1中的阿特拉津降解基因是基因的水平转移重组的结果。     

阿特拉津降解菌Arthrobacter sp. AG1降解基因研究

菌株Arthrobacter sp. AG1能以4000 mg/L的阿特拉津（AT）为唯一碳源、氮源和能源生长。通过设计特异引物从AG1中扩增出阿特拉津氯水解酶基因trzN的全序列,该基因与已报道的trzN基因序列相似性为99%。AG1菌株中含有两个大于100kb的质粒,Southern杂交结果显示trzN和atzB基因均位于其中较大的一个质粒pAG1上。将AG1菌株在LB液体培养基中转接三代后,发现34%的细菌细胞丢失了降解活性,但却未发现丢失质粒,PCR扩增结果表明突变子丢失了trzN基因,但atzB和atzC基因未丢失,说明降解活性的缺失是trzN基因片段从质粒上丢失的结果,表明trzN基因在环境中存在水平转移现象,暗示菌株AG1中的阿特拉津降解基因是基因的水平转移重组的结果。     

利用Mariannaea sp.HJ菌株胞内提取物合成纳米银及其抗菌特性研究

【目的】近年来,纳米银由于其自身独特的抗菌活性而受到越来越多的关注,有研究表明纳米银是一种广谱的抗菌剂,其对数十种致病微生物都有强烈的抑制和杀灭作用。相较于传统的合成方法而言,具有反应条件温和、环境友好等优势的生物合成法是目前的研究热点。【方法】本研究利用真菌Mariannaea sp. HJ的胞内提取物合成纳米银,并对其合成条件进行优化调控,还进一步考察了合成的纳米银颗粒的抗菌性能。【结果】胞内提取物浓度350 mg/L、AgNO_3浓度5 mmol/L、pH 7.0为菌株HJ胞内提取物合成纳米银的最优条件;TEM图像表明合成的纳米银颗粒主要为球形和伪球形,分散性良好,无明显的团聚现象;XRD表明合成的纳米银晶体结构为面心立方体结构;通过FTIR分析结果推测提取物中的羟基、羧基等官能团可能参与了纳米银的还原和稳定过程。此外,在本实验条件下合成的纳米银颗粒对革兰氏阴性菌Escherichia coli BL21和革兰氏阳性菌Arthrobacter sp. W1都有较好的抗菌活性。【结论】真菌Mariannaea sp. HJ胞内提取物能合成尺寸均一且分散性良好的球形纳米银颗粒,合成的纳米银颗粒在抗菌方面具有潜在的研究价值。     

砷氧化菌株的筛选及Bosea sp.AS-1基因组分析

[目的] 对湖南省锡矿山地区的砷氧化菌株的种属进行初步鉴定,并对砷锑氧化菌株Bosea sp.AS-1（简称AS-1）进行全基因组测序和生物信息学分析。[方法] 分离砷氧化菌株,并利用16S rRNA基因测序进行菌种鉴定。在此基础上,对能够高效氧化砷的菌株AS-1进行全基因组测序,对测序数据进行基因组装和功能注释、COG、GO及KEGG聚类分析,以及次级代谢产物合成基因簇与代谢途径预测等。[结果] 湖南省锡矿山的砷氧化菌株主要分布在α-、β-、γ-变形菌纲以及厚壁菌门。菌株AS-1基因组的测序结果显示AS-1基因组包含一条大小为5.536 Mb环状染色体和两个大小分别为189.9 kb和112.1 kb的质粒。对AS-1基因组进一步分析发现该菌株的基因组中包含砷锑代谢相关基因,还有鞭毛形成、鞭毛运动及生物膜形成的基因,这些基因的存在可能与AS-1能高效耐受和氧化砷和锑的特性相关。此外,菌株AS-1中还存在部分碳固定基因和硫氧化基因,这暗示着AS-1能够进行自养生长并氧化环境中的硫元素。[结论] 菌株AS-1可以在自养条件下生长并且能够氧化Sb（III）为Sb（V）。     

Production, Purification and Characterization of Alkaline β-Glucosidase Isolated from Agrobacterium sp. PJD-1-1

In order to screen novel β-glucosidase producing strains from environment, one targeted novel strain PJD-1-1 producing β-glucosidase were isolated from putrefied sugarcane leaves with screening and spreading plate. 16S rDNA analysis revealed it was a novel Agrobacterium sp. When the strain was incubated at initial pH 7.0, 20 ℃ with lactose as carbon and NaNO₃ as nitrogen sources, the maximum enzyme activity was 3.92 U/mg. β-glucosidase from this strain was purified using (NH₄)₂SO₄ precipitation followed by dextran gel filtration chromatography and ion exchange chromatography. A purifying fold of 4.85 with gaining rate of 8.0% was obtained. SDA-PAGE analysis of the purified enzyme showed that it was a clear and pure band with molecular mass of ca. 40 kDa. The most optimum activity of the enzyme was at 50 ℃ and pH at 8.0. The enzyme could maintain stability under the conditions below 50 ℃. Hg²⁺ and Ag⁺ heavily inhibited the enzyme activity suggesting that the active catalytic sites of the enzymes might possess thiol radical. Ba²⁺, Ca²⁺, Pb²⁺, Co²⁺, Zn²⁺, Mn²⁺, Na⁺, K⁺, EDTA, and urea had no obvious effects on the enzyme activity. It is concluded that the novel strain Agrobacterium sp. PJD-1-1 producing β-glucosidase was successfully screened from putrefied sugar cane leaves. The produced enzyme had thermal stability, alkaline feature and metal ions tolerance made it useful in the food and broad potential applications in other fields.     

Streptomyces sp.NO1W98中杀黑星菌素的分离和生物合成基因簇的鉴定

[目的] 分离Streptomyces sp.NO1W98中的杀黑星菌素并鉴定其生物合成基因簇。[方法] 利用有机溶剂萃取法对Streptomyces sp.NO1W98放大规模发酵产物进行提取;以正向、反向色谱柱层析进行化合物的分离纯化;借助波谱学手段进行单体化合物的结构鉴定;采用Illumina Hiseq技术进行基因组序列测定,对得到的序列进行生物信息学分析、注释并定位杀黑星菌素的生物合成基因簇vtd,利用基于PCR-targeting的遗传操作系统构建vtd内相关基因的阻断突变株,同时利用pSET152AKE进行基因回补,并分析与野生菌株的发酵产物差异。[结果] 从NO1W98发酵产物提取物中初步分离鉴定了2个大环内酯类化合物杀黑星菌素A（1）和B（2）;NO1W98的基因组大小约为11.6 Mb,蕴涵49个次级代谢产物生物合成基因簇,其中scaffold 3上的Region 3.3可能负责杀黑星菌素的生物合成;基因阻断和回补实验初步鉴定了杀黑星菌素的生物合成基因簇,包含6个骨架基因、5个转运基因、2个调控基因以及9个后修饰基因。[结论] 杀黑星菌素的分离、结构鉴定和基因簇的鉴定以及生物合成途径的推导为其遗传改造和工程菌株的构建奠定了分子基础。     

酵母Ty1和Ty3转座调控机制研究进展

LTR(Long Terminal Repetition, LTR)反转录转座子广泛存在于真核生物界,是逆转录病毒的进化祖先。LTR反转录转座子有两个古老的家族,Ty1/Copia和Ty3/Gypsy。目前关于LTR反转录转座子转座机制及调控机制研究最透彻的是来源于酵母的两个活性转座子Ty1和Ty3。全面综述了Ty1和Ty3的分子生物学机制相关的最新研究进展。系统总结了Ty1和Ty3的结构特征及转座特性,归纳了Ty1和Ty3与宿主共生的调控机制,为进一步了解酵母LTR反转录转座子相关转座调控机制提供参考。     

转Cry1Ac/1Ab基因棉花对异色瓢虫生长发育及其捕食功能的影响

【目的】为探究转Cry1Ac/1Ab基因棉花对异色瓢虫生长发育及其捕食功能的影响。【方法】以转Cry1Ac/1Ab基因棉与其亲本常规棉为实验材料,利用取食不同棉花品种叶片的棉铃虫饲喂异色瓢虫幼虫。【结果】与常规亲本棉相比,取食饲喂转基因棉花叶片的初孵棉铃虫幼虫的异色瓢虫幼虫从1龄发育至化蛹期时间延长0.77 d,但差异不显著;除1龄幼虫体重增加(0.0773 mg)外,其余各龄期幼虫体重均有所下降,但差异均不显著;异色瓢虫1、2、3、4龄幼虫对初孵棉铃虫捕食量均随棉铃虫密度的增加而增加,捕食功能反应均符合HollingⅡ圆盘方程。【结论】转Cry1Ac/1Ab基因棉花对异色瓢虫生长发育无显著影响,饲喂取食转Cry1Ac/1Ab基因棉花的棉铃虫对异色瓢虫捕食功能无显著差异。     

金属离子胁迫对Sphingomonas sp. Y2降解壬基酚聚氧乙烯醚特性的影响

壬基酚聚氧乙烯醚（NEPOs）是全球应用量最大的非离子型表面活性剂之一,具有环境雌激素毒性。NPEOs的中间代谢产物种类多、难降解,且毒性远高于其母系化合物。为研究金属离子对功能微生物Sphingomonas sp. Y2降解NPEOs特性的影响,分析了金属离子的最低抑制浓度（MIC）、细菌形态、NPEOs降解效率及代谢产物组成等变化。结果显示,菌株Y2对多种金属离子具有耐受性,在重金属培养基中对Mn²⁺、Zn²⁺具有较高的耐受性,MIC分别为500、90 mg/L;在500 mg/L Mn²⁺胁迫下,菌株Y2对NPEOs降解率为100.00%（3 d）;在90 mg/L Zn²⁺胁迫下,菌株Y2对NPEOs的降解率为20.62%（5 d）;两种离子双重胁迫下NPEOs降解率为15.65%（5 d）;Mn²⁺胁迫下菌株Y2细胞表面结构和形态发生明显变化,且改变了NPEOs代谢产物中组分的含量组成,其中短链NPEOs与短链壬基酚聚氧乙烯酸（NPECs）的比例为0.68,与对照相比,抑制/减缓了短链NPEOs的羧化反应。结果表明,菌株Sphingomonas sp. Y2对多种金属离子具有耐受性,Mn²⁺胁迫对细胞表面超微结构及NPEOs中间代谢产物组分组成产生显著影响。该研究将为表面活性剂类污染物的生物降解及相应代谢产物在环境中的毒性评价提供理论依据。     

耐镉甲基营养芽胞杆菌吸附条件的优化及其抗逆性

【目的】对所筛选的1株耐镉甲基营养芽胞杆菌NTGB29进行了环境抗逆性的研究,及影响菌株吸附镉离子效率的条件优化。【方法】以发酵液活菌数为指标,研究其对不同NaCl浓度、酸碱度、镉离子浓度的耐受情况;进一步通过单因素实验和响应面法优化影响菌株镉离子吸附效率的发酵条件;以有效镉离子含量为指标,验证菌株在镉污染土壤中的吸附效果。【结果】结果表明,菌株NTGB29对NaCl浓度、酸碱度、Cd²⁺浓度的最大耐受值分别为10%、pH11.0、50mg/L;菌株在发酵液初始Cd²⁺浓度10 mg/L、起始pH 6.4、培养温度37°C、NaCl浓度4.2%、装液量50 mL/250 mL、培养时间24 h时,对Cd²⁺的吸附率达到79.70%;菌株能有效降低镉污染土壤中的有效镉离子含量,吸附率为29.65%。【结论】菌株NTGB29在较高浓度Cd²⁺浓度、NaCl浓度及强碱环境条件下仍然能够生长,具有良好的环境抗逆性及Cd²⁺吸附能力,在镉污染土壤调理剂及微生物功能菌剂的研制方面能够提供有价值的菌种资源。     

Specific Cd2+ uptake of encapsulated Aureobasidium pullulans biosorbents

Calcium alginate capsules containing Aureobasidium pullulans cells were prepared by an in-situ one-step method. The Cd²⁺uptakes of free biosorbent and capsule biosorbent were described well by the Freundlich isotherms. The Cd²⁺ uptake of capsule biosorbent was lower than that of free biosorbent with Cd^{2 +}at 100 mg l^–1. The total cadmium uptake of capsule biosorbent increased with the increase in encapsulated cell density and plateaued at a value of 23 g Cd²⁺/capsule with 150 g dry biosorbent l^–1 core volume of a capsule. The specific cadmium uptake of encapsulated biosorbent was 85% to that of free biosorbent at 35 g biosorbent dry weight l^–1 core volume of a capsule, decreased to 35% at 176 g biosorbent dry weight l^–1.     

Cell surface structure enhancing uptake of polyvinyl alcohol (PVA) is induced by PVA in the PVA-utilizing <Emphasis Type="Italic">Sphingopyxis</Emphasis> sp. strain 113P3

Polyvinyl alcohol (PVA)-utilizing Sphingopyxis sp. 113P3 (reidentified from Sphingomonas sp. 113P3) removed almost 0.5% PVA from culture supernatants in 4 days. Faster degradation of 0.5% PVA was performed by the periplasmic fraction. The average molecular size of PVA in the culture supernatant or cell-bound PVA was gradually shifted higher, suggesting that lower molecular size molecules are degraded faster. Depolymerized products were found in neither the culture supernatant nor the cell-bound fraction; however they were recovered from the periplasmic fraction. As extracellular or cell-associated PVA oxidase activity was almost undetectable in strain 113P3, degradation of PVA must be performed by periplasmic PVA dehydrogenase after uptake into the periplasm. Following the consumption of PVA, a dent appeared on the cell surface on day 2 and increased in size and depth for 4 days and was maintained for 8 days. Ultrastructural change on the cell surface was only observed in PVA medium, but not in nutrient broth (NB), suggesting that the change is induced by PVA. Fluorescein-4-isothiocyanate-labeled PVA was bound more to cells grown in PVA than to cells grown in NB. No binding was found with PVA-grown cells treated with formaldehyde. Thus, a dent on the cell surface seems to be related to the uptake of PVA.     

Repeated removal of cadmium and zinc from an industrial effluent by waste biomass Sargassum sp.

Waste biomass Sargassum sp. biosorbed 100% of Cd²⁺ and 99.4% of Zn²⁺ from a 3 and 98 mg l^–1 solution (pH 4.5), respectively, at the end of four serial experiments. Of the five desorbents studied in consecutive adsorption/desorption cycles, CaCl₂ 0.05 M eluted nearly 40% of both metals and decreased the biosorption in only 8% and 17% of Cd²⁺ and Zn²⁺, respectively. Although NaOH desorbent improved the heavy metal uptake from the second cycle onwards, it did not elute metals from the pre-loaded biomass.     

Rhodopseudomonas sphaeroides forma sp. denitrificans,a denitrifying strain as a subspecies of Rhodopseudomonas sphaeroides

From polluted water of a lagoon pond a new type of denitrifying photosynthetic purple bacteria was isolated. With respect to morphology, fine structure, photopigments, requirement for growth factors, the range of utilization of organic substrates for phototrophic growth and DNA base ratio, the denitrifying strains show the closest resemblance to Rhodopseudomonas sphaeroides and were therefore described as a subspecies named R. sphaeroides forma sp. denitrificans. The new isolates grow well with nitrate anaerobically in the dark accompanying the evolution of nitrogen gas. They cannot assimilate nitrate as the nitrogen source for growth.     

Biotechnological potential of Microcystis sp. in Cu, Zn and Cd biosorption from single and multimetallic systems

This paper provides information on biosorption of Cu, Zn and Cd by Microcystis sp. in single, bi and trimetallic combination. Highest biosorption of Cu followed by Zn and Cd in single as well as in mixtures containing two or three metals was noticed. The order of inhibition of Cu, Zn and Cd biosorption in bi and trimetallic combinations was suggestive of screening or competition for the binding sites on the cell surface. This observation was reconfirmed by Freundlich adsorption isotherm. K_f values were maximum for Cu (K_f=45.18), followed by Zn (K_f=16.71), and Cd (K_f=15.63) in single metallic system. The K_f values for each test metal was reduced in solution containing more than one metal. Further, the reduction in biosorption of each metal ion due to presence of other metal ion was of greater magnitude at relatively higher concentrations of interfering metal ion. The biosorption of Cu at saturation was less affected when secondary metal (Cd or Zn) was added in the medium. Above results suggest that Microcystis holds great potential for metal biosorption from mixture.     

Fünf neue Arten der GattungAnthemis (Compositae) aus Iraq und Afghanistan

Five new species ofAnthemis sect.Anthemis from the Flora Iranica region are described:A. gillettii (subsect.Anthemis) from NW. Iraq and adjacent Iran is allied toA. damascena.—A. kurdica (subsect.Anthemis) also grows in Iraqi Kurdistan.—A. hamrinensis (subsect.Rascheyana; akin toA. plebeia) is distributed in the Jabal Hamrin region at the extreme outer margin of the Zagros chains.—A. kandaharica (subsect.Anthemis) andA. freitagii (subsect.Rascheyana) are distributed in Afghanistan.

Anschrift des Herausgebers: Hofrat Univ.-Prof. Dr.Karl Heinz Rechinger, Beckgasse 22, A-1130 Wien, Österreich.     

Review of the genusBembras Cuvier, 1829 (Scorpaeniformes: Bembridae) with description of three new species collected from Australia and Indonesia

The bembrid genusBembras Cuvier is reviewed. Five species,B. japonica Cuvier,B. adenensis Imamura & Knapp and three undescribed species, were assigned to the genus. Type species of the genus,Bembras japonica is redescribed on the basis of 36 specimens including the holotype, and three new species,B. macrolepis, B. longipinnis andB. megacephala, previously misidentified asB. japonicus, are also described on the basis of specimens collected from Australia and Indonesia.Bembras macrolepis differs from its congeners by having large body scales, a long pectoral fin with 17–19 rays and a dark blotch on slightly upper portion to middle of margin, 14–15 anal-fin rays, small head and orbit, and caudal fin with a broad vertical dark band near posterior margin.Bembras longipinnis is distinguished from other members of the genus by having a slightly long pectoral fin with 17–19 rays and lacking a small black blotch near tip of upper rays, caudal fin with a large dark spot most intense in lower lobe, 1–2 gill rakers on upper gill arch, 13–14 anal-fin rays, slightly elong ated head and small orbit.Bembras megacephala is characterized by the following combination of characters: caudal fin with several irregular narrow vertical dark bands, small orbit, pectoral fin with 19–20 rays and lacking a small black blotch near tip of upper rays, head elongate, 2–4 gill rakers on upper gill arch, 15 anal-fin rays and small body scales. A key separating the five species ofBembras is given.     

耐铅镉菌株的分离鉴定及其吸附能力

堆肥中添加生物钝化剂是当前降低粪便中重金属生物毒性最为有效的方式之一,为了进一步提高其钝化重金属的能力,文中获得了复合重金属高耐性的钝化剂菌株,并探究其生物学特性和吸附特征。采集猪粪堆肥样品并在改良的牛肉膏培养基中分离和筛选耐铅又耐镉的高耐性菌株,通过形态结合分子生物学鉴定该菌株。该菌株分别在不同pH、温度和盐浓度条件下培养获得其最适的生长条件,进而在该条件下分析其对铅镉吸附的特性。结果获得一株耐铅浓度为600 mg/L、镉浓度为120 mg/L的铅镉复合耐性菌株SC19,该菌株为西地西菌属,其最适生长环境为pH值7.0、温度37℃、盐浓度0.5%。培养36 h的稳定期SC19菌株在吸附时间30min时铅的去除率最高,对铅的最大去除率和吸附量分别为60.7%和329.13mg/g;培养8h的对数期在吸附时间30min时镉的去除率最高,对镉的最大去除率和吸附量分别为51.0%和126.19 mg/g。红外光谱分析显示,SC19菌株对铅镉离子的吸附主要是细胞表面的多种活性基团与金属离子发生络合作用。该研究揭示了SC19菌株有较好的二价态铅镉离子吸附能力,可为生物钝化重金属提供重要的微生物种...