树种及多样性组配对南亚热带人工林早期树木生长的影响

为科学筛选提升南亚热带人工林生产力的树种配置模式,选择南亚热带8个乡土树种,采用随机区组的试验设计,建立了树种多样性梯度(1、2、4、6个树种)人工新造林试验平台,研究树种多样性及不同功能特性树种混交对人工林早期树木生长的影响。结果表明: 在树木生长第5年,树木生长并没有随树种多样性增加而增加;速生树种马尾松和米老排纯林生长量是珍贵树种红椎和格木纯林的2.5～4.5倍;2个树种混交和4个树种混交情况下,针阔树种混交、速生树种与固氮树种混交显著提高树木生长量51.5%～132.8%,而当6个树种混交时,不同树种组配对生长量没有显著影响。不同树种配置模式下土壤氮、磷养分是影响树木早期生长的主要因素。针阔树种混交、速生和固氮树种混交能显著提高南亚热带人工林树木的早期生长。     

From gene trees to species trees II: species tree inference by minimizing deep coalescence events

When gene copies are sampled from various species, the resulting gene tree might disagree with the containing species tree. The primary causes of gene tree and species tree discord include incomplete lineage sorting, horizontal gene transfer, and gene duplication and loss. Each of these events yields a different parsimony criterion for inferring the (containing) species tree from gene trees. With incomplete lineage sorting, species tree inference is to find the tree minimizing extra gene lineages that had to coexist along species lineages; with gene duplication, it becomes to find the tree minimizing gene duplications and/or losses. In this paper, we present the following results: 1) The deep coalescence cost is equal to the number of gene losses minus two times the gene duplication cost in the reconciliation of a uniquely leaf labeled gene tree and a species tree. The deep coalescence cost can be computed in linear time for any arbitrary gene tree and species tree. 2) The deep coalescence cost is always not less than the gene duplication cost in the reconciliation of an arbitrary gene tree and a species tree. 3) Species tree inference by minimizing deep coalescence events is NP-hard.     

Fruit Yield,not DBH or Fruit Crown Volume,Correlates with Time Spent Feeding on Fruits by Wild Leontopithecus rosalia

Assessing fruit availability is a critical element in testing hypotheses concerning resource use by frugivores. One method to estimate fruit availability is to measure tree diameter at breast height (DBH) and assume a positive correlation with fruit tree productivity. Our first objective was to test the relationship between DBH and tree productivity. We used as our measures of tree productivity: volume of the fruit bearing region of the tree crown (FBRv) and fruit yield measured as grams of dry fruit matter per fruit bearing region (FBR). Our second objective was to determine if time spent feeding on fruits by golden lion tamarins was correlated with 3 measures of tree productivity within their territories. We define tree productivity within a territory as tree productivity × tree density (fruit tree productivity/ha). We used as our measures of tree productivity/ha: (1) DBH × tree density, (2) fruit yield × tree density, and (3) FBRv × tree density. We measured DBH and FBRv for 17 fruit species commonly eaten by golden lion tamarins in Poço das Antas Reserve, Brazil. We counted fruits in trees and collected fruits to calculate fruit yield. We used measures of tree densities to calculate tree productivity/ha. We found that DBH correlated with fruit yield. The time tamarins spent feeding did not correlate with DBH ( × tree density) or FBRv ( × tree density), but it correlated with fruit yield ( × tree density). Our results emphasize the importance of recording temporal and spatial measures of fruit productivity that are meaningful to the frugivore studied.     

沈阳城市森林群落的树种组合选择

通过对沈阳市建成区公园树木的调查分析,获得各树种的综合表现排序,并利用Jaccard定量修正系数进行树种问关联性分析。结果表明,沈阳市建成区城市森林群落的最佳树种组合为5组,参考树种组合3组,且选择树种与各树种的综合表现评价相一致;对沈阳城市森林的树种进行选择分析,提出沈阳城市森林的参考骨干树种和基调树种;分析了沈阳市建成区公园树种分布的现状,并提出其发展建议。     

塔里木河下游胡杨空心特征

本文选取塔里木河下游阿拉干断面胡杨林长期监测样地,分析胡杨林空心率、树洞特征及其在不同胸径和树高组间的分布特点。结果表明: 研究区胡杨种群具有较高的空心现象,空心胡杨占调查胡杨总数量的56%,约159株·hm^-2;胡杨空心率在不同胸径和树高组间呈显著差异,其与胸径呈显著正相关,与树高呈显著负相关。该监测样地胡杨树洞密度约560个·hm^-2,平均每株2个;所调查的胡杨树洞大部分出现在树干上(57.1%),均以树干中部洞口为主(31.3%);直径为5~15 cm的树洞(38.2%)所占比例最大。总树洞数量、单株树洞数量、树洞直径等特征与胸径呈显著正相关,与树高呈显著负相关,而各树洞类型在不同胸径和树高组间的分布不同,变化趋势不一致。胡杨树洞在各方位上的分布差异显著,树洞集中分布在正西方向上。胡杨荒漠河岸林的空心发生率较为严重,且胸径越大其空穴化程度越明显。加强保育幼龄胡杨和修复退化荒漠河岸林具有重要意义。     

Using genetic algorithms for the construction of phylogenetic trees: application to G-protein coupled receptor sequences

Many different phylogenetic clustering techniques are used currently. One approach is to first determine the topology with a common clustering method and then calculate the branch lengths of the tree. If the resulting tree is not optimal exchanging tree branches can make some local changes in the tree topology. The whole process can be iterated until a satisfactory result has been obtained. The efficiency of this method fully depends on the initially generated tree. Although local changes are made, the optimal tree will never be found if the initial tree is poorly chosen. In this article, genetic algorithms are applied such that the optimal tree can be found even with a bad initial tree topology. This tree generating method is tested by comparing its results with the results of the FITCH program in the PHYLIP software package. Two simulated data sets and a real data set are used.     

LIGNUM: A Tree Model Based on Simple Structural Units

The model LIGNUM treats a tree as a collection of a large numberof simple units which correspond to the organs of the tree.The model describes the three dimensional structure of the treecrown and defines the growth in terms of the metabolism takingplace in these units. The activities of physiological processescan be explicitly related to the tree structures in which theyare taking place. The time step is 1 year. The crown of the model tree consists of tree segments, branchingpoints and buds. Each pair of tree segments is separated bya branching point. The buds produce new tree segments, branchingpoints and buds. The tree segments contain wood, bark and foliage.A model tree consisting of simple elements translates convenientlyto a list structure: the computer program implementing LIGNUMtreats the tree as a collection of lists. The annual growth of the tree is driven by available photosyntheticproducts after respiration losses are accounted for. The photosyntheticrate of foliage depends on the amount of light. The amount ofphotosynthates allocated to the growth of new tree segmentsis controlled by the light conditions and the amount of foliageon the mother tree segment. In principle, the biomass relationshipsof the tree parts follow the pipe model hypothesis. The orientationof new tree segments results from the application of constantbranching angles. LIGNUM has been parametrized for young Scotspine (Pinus sylvestrisL.) trees. However, the model is generic;with a change of parameter values and minor modifications itcan be applied to other species as well. Growth model; object-oriented modelling; tree architecture; branching structure; Pinus sylvestrisL.; developmental morphology and physiology; photosynthesis; respiration     

Coalescent histories for discordant gene trees and species trees

Given a gene tree and a species tree, a coalescent history is a list of the branches of the species tree on which coalescences in the gene tree take place. Each pair consisting of a gene tree topology and a species tree topology has some number of possible coalescent histories. Here we show that, for each n≥7, there exist a species tree topology S and a gene tree topology G≠S, both with n leaves, for which the number of coalescent histories exceeds the corresponding number of coalescent histories when the species tree topology is S and the gene tree topology is also S. This result has the interpretation that the gene tree topology G discordant with the species tree topology S can be produced by the evolutionary process in more ways than can the gene tree topology that matches the species tree topology, providing further insight into the surprising combinatorial properties of gene trees that arise from their joint consideration with species trees.     

Global and regional tree species diversity

Aims Understanding tree species richness at a global scale and the origin and maintenance of patterns of tree species richness across the world is crucial to preserving tree species diversity. The recently published global tree database (i.e. GlobalTreeSearch) is the only source with tree lists at both global and national scales. However, our review and assessment show that many species included in GlobalTreeSearch are not tree species. In addition, several thousands of tree species in the botanical literature have not been included in GlobalTreeSearch. The exact number of tree species in the world remains unknown. This study aims to correct errors with GlobalTreeSearch and to estimate the number of tree species in the world based on a large number of regional floras.     

The probability distribution of ranked gene trees on a species tree

The properties of random gene tree topologies have recently been studied under a coalescent model that treats a species tree as a fixed parameter. Here we develop the analogous theory for random ranked gene tree topologies, in which both the topology and the sequence of coalescences for a random gene tree are considered. We derive the probability distribution of ranked gene tree topologies conditional on a fixed species tree. We then show that similar to the unranked case, ranked gene trees that do not match either the ranking or the topology of the species tree can have greater probability than the matching ranked gene tree.     

试论中国第三果树带的形成与发展

本文提出了果树带的新概念,即根据果树栽培的高效优质及其自然分布情况,提出在长江以南（北纬１８─３２°）柑桔为主的第一果树带和长江以北（北纬３２─４３°）苹果为主的第二果树带之间,即北纬２５─３５°建立和发展以猕猴桃为主的第三果树带的新论点。同时,因海拔高度的变化以及在两带的边缘地域,表现出部分过度交互型特征。本文还进一步阐述了以猕猴桃为代表的第三果树带形成和发展的可能与条件,指出提高果树种植效益与不同果树相应气候带的关系,分析说明了中国第三果树带的形成与发展的重要意义。此外,还对第三果树带的果树组成、发展方向和途径等关键性问题进行了讨论,为中国第三果树带的形成与发展提供了理论依据。     

Decadal dynamics of tree cover in an Australian tropical savanna

Spatio‐temporal variation in tropical savanna tree cover remains poorly understood. We aimed to quantify the drivers of tree cover in tropical mesic savannas in Kakadu National Park by relating changes in tree cover over 40 years to: mean annual rainfall, fire activity, initial tree cover and prior changes in tree cover. Aerial photography, acquired in 1964, 1984 and 2004, was obtained for fifty sites in Kakadu that spanned a rainfall gradient from approximately 1200 to 1600 mm. The remotely sensed estimates of tree cover were validated via field survey. Linear mixed effects modelling and multi‐model inference were used to assess the strength and form of the relationships between tree cover and predictor variables. Over the 40 years, tree cover across these savannas increased on average by 4.94 ± 0.88%, but was spatio‐temporally variable. Tree cover showed a positive albeit weak trend across the rainfall gradient. The strength of this positive relationship varied over the three measurement times, and this suggests that other factors are important in controlling tree cover. Tree cover was positively related to prior tree cover, and negatively correlated with fire activity. Over 20 years tree cover was more likely to increase if (i) tree cover was initially low or (ii) had decreased in the previous 20‐year interval or (iii) there had been fewer fires. Across the examined rainfall gradient, the greater variability in fire activity and inherently higher average tree cover at the wetter latitudes resulted in greater dynamism of tree cover compared with the drier latitudes. This is consistent with savanna tree cover being determined by interactions between mean annual rainfall, tree competition and frequent fire in these tropical mesic savannas.     

A further analysis of the quasi-1/2 power law of tree height in stratified forest communities

To clarify a statistical basis of the empirical fact designated as the quasi-1/2 power law of tree height in stratified natural forest communities, a derivative of Pearson's type VII distribution was adopted and used for describing the frequency distribution of individual tree height in a subpopulation extracted from a forest stand by the symmetric type difference diagram already proposed for the stratification of samples. Limited by the quasi-1/2 power law of tree height, all the coefficients of Pearson's type VII distribution were expressed as empirical equations of tree density in a subpopulation obtained from the stratification of samples. These empirical equations led to the normalized density function of tree height and gave a statistical basis for the quasi-1/2 power law of tree height. In addition to tree height data, the stem diameter at breast height and tree weight data for a forest stand were also stratified into subpopulations by using symmetric type difference diagrams. In conclusion, a new system was proposed for describing the dependence of mean tree height, mean stem diameter at breast height, and mean tree weight on tree density in a subpopulation.     

Linking water use and nutrient accumulation in tree island upland hammock plant communities in the Everglades National Park, USA

The tree island hammock communities in the Florida Everglades provide one of many examples of self-organized wetland landscape. However, little is understood about why these elevated tree island communities have higher nutrient concentration than the surrounding freshwater marshes. Here we used stable isotopes and elemental analysis to compare dry season water limitation and soil and foliar nutrient status in upland hammock communities of 18 different tree islands located in the Shark River Slough and adjacent prairie landscapes. We observed that prairie tree islands, having a shorter hydroperiod, suffer greater water deficits during the dry season than slough tree islands by examining shifts in foliar ??¹³C values. We also found that prairie tree islands have lower soil total phosphorus concentration and higher foliar N/P ratio than slough tree islands. Foliar ??¹⁵N values, which often increase with greater P availability, was also found to be lower in prairie tree islands than in slough tree islands. Both the elemental N and P and foliar ??¹⁵N results indicate that the upland hammock plant communities in slough tree islands have higher amount of P available than those in prairie tree islands. Our findings are consistent with the transpiration driven nutrient harvesting chemohydrodynamic model. The water limited prairie tree islands hypothetically transpire less and harvest less P from the surrounding marshes than slough tree islands during the dry season. These findings suggest that hydroperiod is important to nutrient accumulation of tree island habitats.     

滇西亚种树鼩体外寄生虫自然感染状况及分析

目的调查滇西亚种树鼩体外寄生虫的自然感染状况,为建立树鼩质量控制标准提供依据。方法对野生的滇西亚种树鼩和自繁F1代树鼩各60只分别用尸检法和活体法检测,随即采用拔毛或用透明胶带粘取腋下、耳根、腹股沟、肛门附近等处的毛发制片,置于体视镜和显微镜下观察虫体和虫卵。结果野生滇西亚种树鼩和自繁F1代树鼩体外寄生虫自然感染率分别为：虱子25%/6%、蚤5%/0、蜱1.6%/0、水蛭1.6%/0、虱子和蚤混合感染1.6%/0。结论野生树鼩体外寄生虫的自然感染多为虱子和蚤,其次还有蝉、水蛭,总感染率明显高于自繁F1代。使用灭虱灵对于驱除树鼩体外寄生虫具有较好的疗效。     

A polynomial time algorithm for calculating the probability of a ranked gene tree given a species tree

ABSTRACT: BACKGROUND: The ancestries of genes form gene trees which do not necessarily have the same topology as the species tree due to incomplete lineage sorting. Available algorithms determining the probability of a gene tree given a species tree require exponential computational runtime. RESULTS: In this paper, we provide a polynomial time algorithm to calculate the probability of a ranked gene tree topology for a given species tree, where a ranked tree topology is a tree topology with the internal vertices being ordered. The probability of a gene tree topology can thus be calculated in polynomial time if the number of orderings of the internal vertices is a polynomial number. However, the complexity of calculating the probability of a gene tree topology with an exponential number of rankings for a given species tree remains unknown. CONCLUSIONS: Polynomial algorithms for calculating ranked gene tree probabilities may become useful in developing methodology to infer species trees based on a collection of gene trees, leading to a more accurate reconstruction of ancestral species relationships.     

Gene tree distributions under the coalescent process

Under the coalescent model for population divergence, lineage sorting can cause considerable variability in gene trees generated from any given species tree. In this paper, we derive a method for computing the distribution of gene tree topologies given a bifurcating species tree for trees with an arbitrary number of taxa in the case that there is one gene sampled per species. Applications for gene tree distributions include determining exact probabilities of topological equivalence between gene trees and species trees and inferring species trees from multiple datasets. In addition, we examine the shapes of gene tree distributions and their sensitivity to changes in branch lengths, species tree shape, and tree size. The method for computing gene tree distributions is implemented in the computer program COAL.     

单株树下辐射分布的数值模型

以数值求解的方法建立单株树下的辐射分布模型。模型给出不同纬度、不同坡向、不同树形几何参数、不同树下的平面位置和不同时刻的辐射强度。由此编制了标准的Ｃ 和ＦＯＲ－ＴＲＡＮ 数值函数Ｉ＝ ｆ（ψ，α，Ｓ，Ａ，Ｈｂ，Ｈｃ，Ｒｏ，Ｘ，Ｙ，ｔ）。以新疆和田地区的核桃树下所测得的辐射数据进行拟合运算的结果说明，模型能较好的描述单株树下的实际辐射分布。最后，对树下的平均辐射的全年变化的分析表明，对树冠形状近于锥体的单株树，当树高和冠幅为定值时，增加冠高（减少枝下裸干高）反而能提高树下平均辐射     

Tree invasions: a comparative test of the dominant hypotheses and functional traits

Trees act as ecosystem engineers and invasions by exotic tree species profoundly impact recipient communities. Recently, research on invasive trees has dramatically increased, enabling the assessment of general trends in tree invasion. Analysing 90 studies dealing with 45 invasive tree species, we conducted a quantitative review and a meta-analysis to estimate the relevance of eight leading hypotheses for explaining tree invasions. We also tested whether species functional traits (growth rate, density/cover, germination, biomass and survival) equally promote tree invasiveness. Overall, our results suggest that several hypotheses, linked to invasibility or invasiveness, are pertinent to explain tree invasions. Furthermore, more than one hypothesis has been supported for a given species, which indicates that multiple factors lead to the success of invasive tree species. In addition, growth rate appears to be the most efficient predictor of invasiveness for invasive trees and could thus be used as a means to identify potential alien tree invasions. We conclude that further investigations are needed to test the consistency of some hypotheses across a broader pool of invasive tree species, whilst experimental studies with the same tree species across a larger range of sites would help to reveal the full suite of factors that affect tree invasions.     

Current and Potential Tree Locations in Tree Line Ecotone of Changbai Mountains,Northeast China: The Controlling Effects of Topography

Tree line ecotone in the Changbai Mountains has undergone large changes in the past decades. Tree locations show variations on the four sides of the mountains, especially on the northern and western sides, which has not been fully explained. Previous studies attributed such variations to the variations in temperature. However, in this study, we hypothesized that topographic controls were responsible for causing the variations in the tree locations in tree line ecotone of the Changbai Mountains. To test the hypothesis, we used IKONOS images and WorldView-1 image to identify the tree locations and developed a logistic regression model using topographical variables to identify the dominant controls of the tree locations. The results showed that aspect, wetness, and slope were dominant controls for tree locations on western side of the mountains, whereas altitude, SPI, and aspect were the dominant factors on northern side. The upmost altitude a tree can currently reach was 2140 m asl on the northern side and 2060 m asl on western side. The model predicted results showed that habitats above the current tree line on the both sides were available for trees. Tree recruitments under the current tree line may take advantage of the available habitats at higher elevations based on the current tree location. Our research confirmed the controlling effects of topography on the tree locations in the tree line ecotone of Changbai Mountains and suggested that it was essential to assess the tree response to topography in the research of tree line ecotone.