蛋白质芯片技术检测脑损伤大鼠血清差异蛋白

目的:研究大鼠脑损伤后血清中蛋白质表达谱的变化及其特点.方法:采用弱阳离子交换芯片(WCX2)结合表面增强激光解析电离飞行时间质谱技术分析大鼠闭合性脑损伤后4 h、8 h、12 h、24 h、48 h血清中蛋白质表达谱的改变.结果:与对照组相比,脑损伤后血清中有2个蛋白质的表达谱发生改变.其中差异蛋白5648Da,在4 h、8 h和12 h组表达降低(P＜0.01),24 h和48 h组表达恢复;差异蛋白9681Da在对照组、24 h和48 h组几乎不表达,而4 h、8 h和12 h组表达增加(P＜0.05).结论:脑损伤可引起血清中蛋白质表达谱发生变化.     

低氧促进大鼠肺动脉平滑肌细胞Periostin表达及其信号转导机制

观察低氧对大鼠肺动脉平滑肌细胞（pulmonary artery smooth muscle cells,PASMCs）Periostin表达的影响及其相关信号转导机制。胶原酶I法原代培养PASMCs,经低氧（5％O2）分别处理PASMCs2,6,12,24h后,RT-PCR和Western blot法检测Periostin mRNA和蛋白表达。加入PI3K/Akt通路特异性抑制剂LY294002（10μmol／L）进行干预,Western blot分析比较不同条件下低氧处理24h后大鼠PASMCs中Periostin和Akt／P-Akt的蛋白表达。结果表日月,与常氧组比较,低氧处理6h组、12h组和24h纽Periostin mRNA和蛋白的表达均显著上升（P〈0．05,P〈0．01）,低氧处理后的PASMCs中Periostin mRNA和蛋白的表达逐渐升高：低氧处理2h组无显著差异（P〉0．05）。用LY294002对PASMCs处理,并低氧24h后,Periostin的表达被显著抑制（P〈0．01）,细胞P-Akt的表达下调（P〈0．05）,总Akt的蛋白表达没有明显差异（P〉0．05）。推测低氧可诱导大鼠PASMCs中Periostin mRNA和蛋白的表达上调。低氧可能通过激活P13K/Akt通路促进Akt的磷酸化,进而使Periostin在PASMCs中过表达,提示Periostin在低氧性PASMCs增殖过程中可能起着重要作用。     

人脐带间充质干细胞对低氧环境下的肾小管上皮细胞中肝细胞生长因子（HGF）表达的影响

目的：肾脏的急性缺血缺氧性损伤是泌尿外科常见病,以肾小管间质纤维化为主要病理特点,成体干细胞在急性肾脏损伤动物模型中可以促进肾脏结构修复、改善肾脏功能,肝细胞生长因子作为抗纤维化的主要生长因子,在成体干细胞干预的急性肾脏损伤动物模型实验中起重要作用,然而以往的研究对象主要以动物模型为主,成体干细胞对肝细胞生长因子的具体调节机制尚不清。本实验通过体外分离、培养人的脐带间充质干细胞,来干预离体低氧预处理后的大鼠近端肾小管上皮细胞,探讨在体外培养条件下人脐带间充质干细胞对低氧预处理大鼠近端肾小管上皮细胞肝细胞生长因子表达的影响,为今后研究间充质干细胞治疗肾功能损害提供可靠的理论依据。方法：采用贴壁培养的方法无菌条件下分离、培养、传代人脐带间充质干细胞。细胞融合达90％时更换无血清培养基（serum．fleemedium,SFM）培养24h,收集细胞上清液即为人脐带间充质干细胞条件培养基（conditionmedium,CM）;大鼠近端肾小管上皮细胞（tubularepithelialcells,TECs）于低氧环境处理1h后,随机分为对照组与CM干预组,分别培养24h和48h后检测TECs中大鼠肝细胞生长因子（hepatocytegrowthfactor,HGF）的mRNA水平、收集上清液测定大鼠HGF蛋白的含量,同时收集CM干预组中Oh,12h、24h、48h的上清液,测定其中人来源HGF蛋白的含量,并对TECs在CM干预24h和48h后行免疫组化定性人的HGF蛋白的表达。结果：在低氧预处理的培养环境下,CM干预组中,TECs中大鼠来源的HGFmRNA表达水平在24h和48h时明显高于对照组（P〈0．05）;上清液中大鼠HGF蛋白的含量在24h和48h,CM干预组显著高于对照组（P〈0．05）;上清液中人的HGF蛋白的含量随时间进行性增高,免疫组化染色显示在24h和48h大鼠TECs中能检测人的HGF蛋白的表达。结论：在低氧预处理的体外培养环境下,脐带间充质干细胞的条件培养基可以显著的上调大鼠自身的HGF水平,并可诱导大鼠TECs合成和分泌人的HGF蛋白,并为探究脐带间充质干细胞治疗肾功能损害提供可靠的理论依据。     

人体肝癌细胞急性低氧及低氧习服差异表达基因分析

本文分析了人体肝癌细胞(HepG2)急性低氧处理以及低氧习服处理后基因表达谱的改变。急性低氧处理为细胞在1％氧气中培养48h,低氧习服处理为细胞在1％氧气中培养24h,常氧培养24h,以此作为一个周期,重复6个周期。联合应用抑制消减杂交技术和cDNA芯片技术,筛选HepG2细胞经急性低氧处理与正常培养细胞相比差异表达的基因,以及经低氧习服处理细胞与正常培养细胞相比差异表达的基因。结果显示,HepG2细胞经急性低氧处理与在常氧条件下培养相比,差异表达的基因有37个,表达水平全部表现为下调,其中包括参与细胞周期、细胞应激、细胞信号转导、细胞骨架形成、转录相关蛋白及细胞代谢相关蛋白的基因,1个未知基因序列、4个EST序列、5个线粒体蛋白基因,另外有功能不明的蛋白质基因12个。低氧习服处理的细胞与常氧条件下培养的细胞相比,差异表达的基因有6个,其中包括两个线粒体蛋白基因、金属蛋白酶1基因、转铁蛋白基因、Thymosin ．beta-4和TPT1基因。其中线粒体蛋白ND4、转铁蛋白、Thymosin.beta-4和TPT1基因的表达呈上调,线粒体NDl及金属蛋白酶1基因的表达水平呈下调。经低氧习服处理后,细胞低氧耐受力提高,低氧习服处理细胞基因的表达与急性低氧处理细胞和正常培养细胞的基因表达不同,这种变化可能与低氧习服细胞低氧耐受力的增强有关。     

Ghrelin-GHSR通路在急性低氧暴露大鼠胃炎症反应中的调节作用

由胃合成分泌的食欲刺激激素（ghrelin）可通过结合并激活生长激素促分泌激素受体,（growth hormone secretagogue receptor,GHSR）在调节胃功能方面发挥重要作用。急性低氧暴露导致的消化系统营养吸收障碍和胃肠道炎症反应是否通过Ghrelin-GHSR通路调控尚无研究。本研究采用Wistar大鼠为研究对象,随机分为4组：低氧暴露0 h组、12 h组、24 h组和48 h组,低氧干预在10.2%氧浓度的低氧房中进行。干预前后记录体重;通过分子生物学检测指标评价胃组织炎症因子含量、食欲刺激激素和下丘脑GHSR mRNA相对含量和蛋白质表达水平。本研究证实,随着低氧暴露时间的延长,大鼠体重减少量逐渐增加（12 h：3.73±3.08 g、24 h：8.77±5.04 g、48 h：12.53±6.16 g）;胃组织炎症因子IL-2、IL-4、IL-10、TNFα和MCP-1蛋白含量在低氧12 h后增加（4816.9±983.7 / 9074.5±1107.8 / 18895.1±2967.5 / 37.1±9.8 / 143.5±12.5 pg/mL vs. 166.1±34.6 / 38.3±4.2 / 1429.6±123.9 / 1.7±0.3 / 13.5±2.1 pg/mL）,随着低氧时间延长,炎症因子水平逐渐下降至正常水平（24 h：846.4±94.8 / 1269.8±167.9 / 5769.7±892.6 / 7.5±2.1 / 39.3±8.5 pg/mL;48 h：546.5±97.3 / 374.9±84.9 / 1889.7±982.3 / 2.1±0.8 / 24.6±6.4 pg/mL）;低氧12 h后胃组织食欲刺激激素 mRNA水平较0 h组下降（0.49±0.06 vs. 1, P < 0.05）,48 h后上升（3.79±0.54 vs. 1, P < 0.01）,胃组织的食欲刺激激素蛋白含量在低氧24 h和48 h后均出现上升（1.23±0.15 / 1.16±0.12 vs. 1, P < 0.05）;下丘脑GHSR mRNA在低氧48 h后上升（1.99±0.29 vs. 1, P < 0.01）,蛋白质水平在低氧24 h和48 h后均出现下降（0.35±0.06 / 0.48±0.04 vs. 1, P < 0.05）。表明急性低氧暴露会导致Ghrelin-GHSR通路下调,进而促进胃组织炎症反应,而随着低氧暴露时长的延续,Ghrelin-GHSR通路可通过下调胃中炎症因子水平而避免消化系统的进一步损伤。     

基于RNA测序分析不同低氧暴露模式对大鼠胫骨前肌差异基因表达的影响

目的 筛选慢性间歇低氧暴露和急性低氧暴露对大鼠胫骨前肌差异表达基因及其相关通路分析.方法 SD大鼠24只,分为常氧对照组(C组)、慢性间歇低氧组(IH组,氧浓度为12.4％,每天8 h,共4周)和急性低氧组(AH组,氧浓度为12.4％,每天24 h,共3 d).干预后,测试抓力和瘦体重,取胫骨前肌(TA)进行HE染色后...     

应用iTRAQ结合质谱技术筛选冷应激大鼠血浆差异表达蛋白

目的:应用同重同位素相对与绝对定量(iTRAQ)结合质谱技术筛选冷应激大鼠血浆差异表达蛋白。方法:将30只健康SPF级雄性Wistar大鼠随机分为冷应激组A和常温饲养组B,将A、B两组分别随机分为3组,即A1、A2、A3组和B1、B2、B3组(n=5)。常温饲养温度为(24.0±0.1)℃,冷应激温度为(4.0±0.1)℃。两组实验大鼠经不同温度处理12 h后,用肝素钠抗凝负压管腹主动脉采血,分离血浆,提取血浆蛋白、定量、酶解、iTRAQ标记、强阳离子交换色谱(SCX分离)和质谱分析。结果:共鉴定出1 085个蛋白,筛出39个差异表达蛋白,其中29个表达上调蛋白,10个表达下调蛋白。经生物信息学分析,筛出3个与动物冷应激相关的重要差异表达蛋白,分别为:组织相容性蛋白HA-1、Ras相关蛋白Rap1b、整合蛋白β-1。结论:本实验成功筛出冷应激大鼠血浆差异表达蛋白,iTRAQ技术为筛选大鼠冷应激蛋白诊断标志物提供了一个良好的平台,为深入研究动物冷应激发生机制奠定了良好基础。     

不同微生物大鼠腹腔注射模型尿液蛋白组学的比较

不同的微生物都可以引起腹腔感染,文中尝试利用尿液来区分不同的微生物感染.通过在大鼠腹腔内分别注射大肠杆菌、金黄色葡萄球菌和白色念球菌建立3种模型,收集感染后0、12、36、72h的尿液,并使用液相色谱串联质谱技术(LC-MS/MS)对尿蛋白进行分析.与感染前相比,在大肠杆菌腹腔注射模型中共鉴定到69个差异蛋白,在金黄色...     

高原低氧习服大鼠红细胞变形性的变化规律及其分子机制

目的：探讨高原低氧习服大鼠红细胞变形性的变化规律及其分子机制。方法：将健康雄性大鼠随机分为3组（n=10）：常氧对照组、急性低氧组和低氧习服组。模拟高原低氧环境对大鼠分别进行急性低氧和间断低氧习服,麻醉后心脏采血,分别测定大鼠红细胞变形性、膜流动性、膜胆固醇和总磷脂含量、膜磷脂成分的含量、红细胞ATP酶活性、红细胞内Na＋和Ca2＋浓度及建立红细胞膜蛋白质双向电泳图谱,寻找差异蛋白质点,对其进行质谱鉴定。结果：①急性低氧大鼠红细胞变形性、膜流动性、膜胆固醇和总磷脂含量、红细胞ATP酶活性均降低;红细胞内Na＋和Ca2＋浓度均增高;红细胞膜磷脂酰丝氨酸（PS）、鞘磷脂（SM）含量增加,磷脂酰胆碱（PC）含量降低;建立了红细胞膜蛋白质双向电泳图谱,选取7个差异蛋白质点,其中4个在急性低氧后表达降低。②低氧习服大鼠红细胞变形性、膜流动性、膜胆固醇和总磷脂含量、红细胞ATP酶活性明显均增高;红细胞内Na＋和Ca2＋浓度均降低;红细胞膜PS、SM含量降低,PC含量增加;上述7个差异蛋白质点中4个在低氧习服后表达增高,3个表达降低,质谱技术鉴定结果为补体结合蛋白、水通道蛋白、膜攻击复合物抑制因子、葡萄糖运载体、脂质移行酶、氨基磷脂转移酶、依赖ATP的翻转酶,其中后三个酶与红细胞膜磷脂翻转有关。结论：急性低氧引起红细胞变形性、膜流动性、膜蛋白质表达、红细胞ATP酶活性及胞内Na＋和Ca2＋浓度方面相应的改变;经低氧习服后,上述指标有所改善,低氧习服对急性低氧引起红细胞的影响具有一定的保护作用;红细胞膜上的3种蛋白质,包括脂质移行酶、氨基磷脂转移酶和依赖ATP的翻转酶在低氧习服改善红细胞变形性的机制中可能发挥重要的作用。     

Dynamic changes of urinary proteins in a rat model of acute hypercoagulable state induced by tranexamic acid

The hypercoagulable state leads to the development of thrombotic diseases, but it is difficult to diagnose due to the lack of available biomarkers. This study aimed to investigate systematic changes of the urinary proteome in the acute hypercoagulable state. A rat model of the acute hypercoagulable state was induced by an antifibrinolytic agent tranexamic acid and urine samples were collected for proteomic analysis by liquid chromatography-tandem mass spectrometry. A total of 28 differential proteins were detected in the urinary proteome of the model rats, of which 12 had been previously considered as candidate biomarkers such as myoglobin, and 10 had been considered stable in healthy human urine. Of the 28 differentially expressed proteins 18 had counterparts in humans. Of these 18 proteins, 10 were members of the human core urinary proteome distributed in a variety of human tissues but concentrated in the urinary and digestive systems. Fumarylacetoacetase was verified as a potential marker of the acute hypercoagulable state by Western blot analysis. In conclusion, urine proteome analysis is a powerful approach to identify potential biomarkers of acute hypercoagulable state.     

Proteomics Analysis of Soybean Seedlings under Short-Term Water Deficit

Soybeans are one of the most important grain crops worldwide. Water deficit, which seriously affects the yield and quality of soybeans, is the main abiotic stress factor in soybean production. As a follow-up study, the droughttolerant soybean variant Heinong 44 was analyzed via proteome analysis. Soybean was exposed to water deficit for 0, 8, and 24 h, and protein samples were extracted for detection of differentially expressed proteins. Protein sequencing of leaf tissues under water stress yielded a total of 549 differentially expressed proteins: 75 and 320 upregulated proteins as well as 70 and 84 downregulated proteins were obtained after 8 and 24 h of water deficit, respectively. Gene Ontology analysis revealed that most of the differentially expressed proteins (DEPs) were involved in catalytic activity, molecular function, and metabolic processes, whereas some of them were involved in photosynthesis, carbon metabolism, and energy metabolism. We also identified some differentially expressed proteins that may be involved in the regulation of water deficit response. Our study provides a theoretical basis for the breeding of drought-resistant soybean varieties.     

Proteomic Identification of Novel Differentiation Plasma Protein Markers in Hypobaric Hypoxia-Induced Rat Model

Background

Hypobaric hypoxia causes complex changes in the expression of genes, including stress related genes and corresponding proteins that are necessary to maintain homeostasis. Whereas most prior studies focused on single proteins, newer methods allowing the simultaneous study of many proteins could lead to a better understanding of complex and dynamic changes that occur during the hypobaric hypoxia.

Methods

In this study we investigated the temporal plasma protein alterations of rat induced by hypobaric hypoxia at a simulated altitude of 7620 m (25,000 ft, 282 mm Hg) in a hypobaric chamber. Total plasma proteins collected at different time points (0, 6, 12 and 24 h), separated by two-dimensional electrophoresis (2-DE) and identified using matrix assisted laser desorption ionization time of flight (MALDI-TOF/TOF). Biological processes that were enriched in the plasma proteins during hypobaric hypoxia were identified using Gene Ontology (GO) analysis. According to their properties and obvious alterations during hypobaric hypoxia, changes of plasma concentrations of Ttr, Prdx-2, Gpx -3, Apo A-I, Hp, Apo-E, Fetub and Nme were selected to be validated by Western blot analysis.

Results

Bioinformatics analysis of 25 differentially expressed proteins showed that 23 had corresponding candidates in the database. The expression patterns of the eight selected proteins observed by Western blot were in agreement with 2-DE results, thus confirming the reliability of the proteomic analysis. Most of the proteins identified are related to cellular defense mechanisms involving anti-inflammatory and antioxidant activity. Their presence reflects the consequence of serial cascades initiated by hypobaric hypoxia.

Conclusion/Significance

This study provides information about the plasma proteome changes induced in response to hypobaric hypoxia and thus identification of the candidate proteins which can act as novel biomarkers.     

Proteomic analysis of recurrent joint inflammation in juvenile idiopathic arthritis

The synovial fluid proteome in juvenile idiopathic arthritis was investigated to isolate joint-specific biomarkers that are expressed in patients displaying recurrent joint inflammation. To identify the synovial specific proteome, matched synovial fluid and plasma samples were subjected to protein separation by 2-dimension electrophoresis (2DE). Forty-three protein spots, overexpressed in the joint, were identified. Synovial fluids from children with single-event knee joint inflammation were then compared with a group with recurrent knee disease. Nine synovial specific proteins were significantly differentially expressed in the recurrent group. Proteolytic fragments of collagen X, fibrin beta-chain, and T-cell receptor alpha-region have been identified among this protein cluster. Putative biomarkers, overexpressed in the joint and differentially expressed in children with recurrent joint inflammation, have been identified. These proteins may play a significant role determining the pathological state within the chronically inflamed joint and influence disease progression in JIA. This is the first study of the synovial proteome in children.     

Differential protein expression in brain capillary endothelial cells induced by hypoxia and posthypoxic reoxygenation

Cerebral ischemia causes functional alteration of the blood-brain barrier, formed by brain capillary endothelial cells (BCEC). Changes in protein expression and activity of selected differentially expressed enzymes were investigated in BCEC subjected to hypoxia (24 h) alone or followed by a 24-h reoxygenation. BCEC proteins were isolated, separated by 2-DE, and identified by MALDI-MS. Computer-based 2-D gel analysis identified 21 up-regulated proteins and 4 down-regulated proteins after hypoxia alone and 9 proteins that were further up-regulated after posthypoxic reoxygenation. The expression of the majority of hypoxia-induced proteins was reduced toward control levels during reoxygenation. The most prominent changes were identified for glycolytic enzymes (e.g., phosphoglycerate kinase), proteins of the ER (e.g., calreticulin), and cytoskeletal (e.g., vimentin) proteins. The results indicate that BCEC respond to hypoxia/reoxygenation by adaptive up-regulation of proteins involved in the glycolysis, protein synthesis, and stress response.