The structure and function of fen lakes in relation to water table management in The Netherlands

Most relatively large (> 250 ha) and shallow (< 2 m), Dutch lakes originate from large-scale peat mining. Originally, their water tables were regulated by natural processes such as evapotransporation, precipitation, drainage and seepage (up and downwards). These lakes used to be oligo to mesotrophic, and the phytoplankton consisted mainly of diatoms and green algae. However, 30 years ago filamentous cyanobacteria were also present. Owing to the intensification of agriculture in the surroundings of the lakes, their management developed more and more towards a man-made reservoir function. This management resulted in inflow of eutrophic water from the agricultural areas in winter. In summer the lakes were increasingly used as a water supply. This supply is compensated by water imported mainly from the River Rhine. The impacts of this reservoir function on the limnology of the Dutch fen lakes are discussed with the Tjeukemeer, the Loosdrechtse Plassen and the Reeuwijkse Plassen as examples. All these lakes have become typical eutrophic waters with high turbidity, dominance of filamentous cyanobacteria and bream and complete loss of submerged macrophytes. Finally, methods and results of manipulation procedures to restore these waters are discussed.     

Community-aggregated plant traits interact with soil nutrient heterogeneity to determine ecosystem functioning

Background and aims

Spatial distribution of soil nutrients (soil heterogeneity) and availability have strong effects on above- and belowground plant functional traits. Although there is ample evidence on the tight links between functional traits and ecosystem functioning, the role played by soil heterogeneity and availability as modulators of such relationship is poorly known.

Methods

We conducted a factorial experiment in microcosms containing grasses, legumes and non-legume forbs communities differing in composition to evaluate how soil heterogeneity and availability (50 and 100 mg N) affect the links between traits and ecosystem functioning. Community-aggregated specific leaf area (SLA_agg) and specific root length (SRL_agg) were measured as both relevant response traits to soil heterogeneity and availability, and significant effect traits affecting ecosystem functioning (i.e., belowground biomass, β-glucosidase and acid phosphatase activities, and in situ N availability rate).

Results

SRL_agg was negatively and significantly associated to β-glucosidase, phosphatase and N availability rate in the high nutrient availability and heterogeneous distribution scenario. We found a significant negative relationship between SLA_agg and availability rate of mineral-N under low nutrient availability conditions.

Conclusions

Soil heterogeneity modulated the effects of both traits and nutrient availability on ecosystem functioning. Specific root length was the key trait associated with soil nutrient cycling and belowground biomass in contrasted heterogeneous soil conditions. The inclusion of soil heterogeneity into the trait-based response-effect framework may help to scale from plant communities to the ecosystem level.     

CH4 production and oxidation processes in a boreal fen ecosystem after long‐term water table drawdown

Fens, which extend over vast areas in the Northern hemisphere, are sources of the greenhouse gas CH₄. Climate change scenarios predict a lowering water table (WT) in mires. To study the effect of WT drawdown on CH₄ dynamics in a fen ecosystem, we took advantage of a WT drawdown gradient near a ground water extraction plant. Methane fluxes and CH₄ production and oxidation potentials were related to microbial communities responsible for the processes in four mire locations (wet, semiwet, semidry, and dry). Principal component analyses performed on the vegetation, pH, CH₄, and WT results clearly separated the four sampling locations in the gradient. Long‐term lowering of WT was associated with decreased coverage of Sphagnum and aerenchymatic plants, decreased CH₄ field emissions and CH₄ production potential. Based on mcrA terminal restriction fragment length polymorphism the methanogen community structure correlated best with the methane production and coverage of aerenchymatic plants along the gradient. Methanosarcinaceae and Methanocellales were found at the pristine wet end of the gradient, whereas the Fen cluster characterized the dry end. The methane‐oxidizing bacterial community consisted exclusively of Methylocystis bacteria, but interestingly of five different alleles (T, S, R, M, and O) of the particulate methane monooxygenase marker gene pmoA. The M allele was dominant in the wet locations, and the occurrence of alleles O, S, and T increased with drainage. The occurrence of the R allele that characterized the upper peat layer correlated with CH₄ oxidation potential. These results advance our understanding of mire dynamics after long‐term WT drawdown and of the microbiological bases of methane emissions from mires.     

Contributions of algae to GPP and DOC production in an Alaskan fen: effects of historical water table manipulations on ecosystem responses to a natural flood

The role of algae in the metabolism of northern peatlands is largely unknown, as is how algae will respond to the rapid climate change being experienced in this region. In this study, we examined patterns in algal productivity, nutrients, and dissolved organic carbon (DOC) during an uncharacteristically wet summer in an Alaskan rich fen. Our sampling was conducted in three large-scale experimental plots where water table position had been manipulated (including both drying and wetting plots and a control) for the previous 4 years. This study allowed us to explore how much ecosystem memory of the antecedent water table manipulations governed algal responses to natural flooding. Despite no differences in water table position between the manipulated plots at the time of sampling, algal primary productivity was consistently higher in the lowered water table plot compared to the control or raised water table plots. In all plots, algal productivity peaked immediately following seasonal maxima in nutrient concentrations. We found a positive relationship between algal productivity and water-column DOC concentrations (r (2) = 0.85, P < 0.001). Using these data, we estimate that algae released approximately 19% of fixed carbon into the water column. Algal exudates were extremely labile in biodegradability assays, decreasing by more than 55% within the first 24 h of incubation. We suggest that algae can be an important component of the photosynthetic community in boreal peatlands and may become increasingly important for energy flow in a more variable climate with more intense droughts and flooding.     

Methane emissions from fen,bog and swamp peatlands in Quebec

A static chamber technique was used weekly from spring thaw to winter freezing to measure methane emissions from 10 sites representing subarctic fens and temperate swamps and bogs. Rates of < 200 mg CH₄ m^–2 d^–1 were recorded in subarctic fens: within-site emissions were primarily controlled by the evolution of the peat thermal regime, though significant releases during spring thaw were recorded at some sites. Between subarctic fens, topography and water table elevation were important controls on methane emissions, with the general sequence: pool = horizontal fen> string. Emission rates from the 2 swamp sites were lower (< 20 mg CH₄ m^–2 d^–1 ), except during the spring thaw and when the sites were saturated. The low water table ( < 80 cm depth) in abnormally dry years reduced emission rates; rates were also low from a swamp site which had been drained and cleared of vegetation for horticulture. Methane emission rates were also low (< 5 mg CH₄ m^–2 d^–1) from 2 ombrotrophic bog sites. Laboratory measurements of rates of methane production under anaerobic conditions and methane consumption under aerobic conditions revealed that production rates were generally highest in the surface layers (0 to 2.5 cm depth); production was high in the fens and very low in the bogs. The swamp samples were able to produce methane under anaerobic conditions, but were also able to consume methane under aerobic conditions. Annual methane emission rates are estimated to be 1 to 10 g CH₄ m^–2 from the fens, 1 to 4 g CH4 m^–2 from the swamps and <0.2 g CH₄ m^–2 from the bogs and drained swamp.     

Exploring the links between functional traits and cultural ecosystem services to enhance urban ecosystem management

Functional traits have been proposed as a more mechanistic way than species data alone to connect biodiversity to ecosystem processes and function in ecological research. Recently, this framework has also been broadened to include connections of traits to ecosystem services. While many links between traits and ecosystem processes/functions are easily and logically extended to regulating, supporting, and provisioning services, connections to cultural services have not yet been dealt with in depth. We argue that addressing this gap may involve a renegotiation of what have traditionally been considered traits, and a targeted effort to include and expand upon efforts to address traits-cultural ecosystem services links in traits research. Traits may also offer a better way to explore the recognition and appreciation of biodiversity. Drawing upon examples from outside the explicit traits literature, we present a number of potential connections between functional traits and cultural ecosystem services for attention in future research. Finally, we explore considerations and implications of employing a traits approach in urban areas, and examine how connections between traits and ecosystem services could be developed as indicators in a research and management context to generate a robust and resilient supply of ecosystem services.     

On the relationship between water table depth and water vapor and carbon dioxide fluxes in a minerotrophic fen

The focus of this study is the relationship between water table depth (WTD) and water vapor [evapotranspiration (ET)] and carbon dioxide [CO₂; net ecosystem exchange (NEE)] fluxes in a fen in western Canada. We analyzed hydrological and eddy covariance measurements from four snow‐free periods (2003–2006) with contrasting meteorological conditions to establish the link between daily WTD and ET and gross ecosystem CO₂ exchange (GEE) and ecosystem respiration (R_eco; NEE=R_eco?GEE), respectively: 2003 was warm and dry, 2004 was cool and wet, and 2005 and 2006 were both wet. In 2003, the water table (WT) was below the ground surface. In 2004, the WT rose above the ground surface, and in 2005 and 2006, the WT stayed well above the ground surface. There were no significant differences in total ET (～316 mm period^?1), but total NEE was significantly different (2003: 8 g C m^?2 period^?1; 2004: ?139 g C m^?2 period^?1; 2005: ?163 g C m^?2 period^?1; 2006: ?195 g C m^?2 period^?1), mostly due to differences in total GEE (2003: 327 g C m^?2 period^?1; 2004: 513 g C m^?2 period^?1; 2005: 411 g C m^?2 period^?1; 2006: 556 g C m^?2 period^?1). Variation in ET is mostly explained by radiation (67%), and the contribution of WTD is only minor (33%). WTD controls the compensating contributions of different land surface components, resulting in similar total ET regardless of the hydrological conditions. WTD and temperature each contribute about half to the explained variation in GEE up to a threshold ponding depth, below which temperature alone is the key explanatory variable. WTD is only of minor importance for the variation in R_eco, which is mainly controlled by temperature. Our study implies that future peatland modeling efforts explicitly consider topographic and hydrogeological influences on WTD.     

A decade of boreal rich fen greenhouse gas fluxes in response to natural and experimental water table variability

Rich fens are common boreal ecosystems with distinct hydrology, biogeochemistry and ecology that influence their carbon (C) balance. We present growing season soil chamber methane emission (F_CH4), ecosystem respiration (ER), net ecosystem exchange (NEE) and gross primary production (GPP) fluxes from a 9‐years water table manipulation experiment in an Alaskan rich fen. The study included major flood and drought years, where wetting and drying treatments further modified the severity of droughts. Results support previous findings from peatlands that drought causes reduced magnitude of growing season F_CH4, GPP and NEE, thus reducing or reversing their C sink function. Experimentally exacerbated droughts further reduced the capacity for the fen to act as a C sink by causing shifts in vegetation and thus reducing magnitude of maximum growing season GPP in subsequent flood years by ~15% compared to control plots. Conversely, water table position had only a weak influence on ER, but dominant contribution to ER switched from autotrophic respiration in wet years to heterotrophic in dry years. Droughts did not cause inter‐annual lag effects on ER in this rich fen, as has been observed in several nutrient‐poor peatlands. While ER was dependent on soil temperatures at 2 cm depth, F_CH4 was linked to soil temperatures at 25 cm. Inter‐annual variability of deep soil temperatures was in turn dependent on wetness rather than air temperature, and higher F_CH4 in flooded years was thus equally due to increased methane production at depth and decreased methane oxidation near the surface. Short‐term fluctuations in wetness caused significant lag effects on F_CH4, but droughts caused no inter‐annual lag effects on F_CH4. Our results show that frequency and severity of droughts and floods can have characteristic effects on the exchange of greenhouse gases, and emphasize the need to project future hydrological regimes in rich fens.     

Plant functional composition and ecosystem properties: the case of peatlands in South Africa

The assumption that ecosystems with similar emergent properties consist of similar functional groupings of plant species is tested by comparing three peatlands from different bioregions across South Africa. They are Mfabeni Swamp in the subtropical coastal region, Wakkerstroom on the inland plateau, and Goukou wetland in the Winter Rainfall region of the Western Cape. In each of the three peatlands, about 400 small vegetation plots have been made from which the abundance of each species per wetland can be assessed. The most dominant species in these plots have been investigated for 17 traits. The functional composition of the vegetation types has been compared across the three peatlands and Functional Diversity has been calculated, taking the dominance of each species into account. One peatland differed greatly from the other two, since the dominant species was of a functional type (“Palmiet/woody sedge”) that was very divergent from any other peatland species found in the study. This functional type can be considered an ecosystem engineer and the effects that this functional type has on the ecosystem results in the occurrence of many other functional types that do not occur in the other peatlands. When we consider emergent traits of an ecosystem as a function of all the plant functional traits that occur in that ecosystem, then peatlands can be regarded as a heterogeneous group of ecosystems. Even if emergent properties such as peat formation are similar between ecosystems, those ecosystems may still consist of very different functional groups. Ecosystem engineers have an impact on the final functional composition of an ecosystem and the degree in which ecosystem engineering plays a role in peatlands differs between different peatlands.     

Sphagnum re-introduction in degraded peatlands: The effects of aggregation,species identity and water table

In European peatlands which have been drained and cut-over in the past, re-vegetation often stagnates after the return of a species-poor Sphagnum community. Re-introduction of currently absent species may be a useful tool to restore a typical, and more diverse, Sphagnum vegetation and may ultimately improve the functioning of peatland ecosystems, regarding atmospheric carbon sequestration. Yet, the factors controlling the success of re-introduction are unclear. In Ireland and Estonia, we transplanted small and large aggregates of three Sphagnum species into existing vegetation. We recorded changes in cover over a 3-year period, at two water levels (?5 and ?20 cm).Performance of transplanted aggregates of Sphagnum was highly species specific. Hummock species profited at low water tables, whereas hollow species profited at high water tables. But our results indicate that performance and establishment of species was also promoted by increased aggregate size. This mechanism (positive self-association) has earlier been seen in other ecosystems, but our results are the first to show this mechanism in peatlands. Our results do not agree with present management, which is aimed at retaining water on the surface of peat remnants in order to restore a functional and diverse Sphagnum community. More than the water table, aggregate size of the reintroduced species is crucial for species performance, and ultimately for successful peatland restoration.     

Boreal peat properties link to plant functional traits of ecosystem engineers

Aims

Warming has the potential to alter plant litter mass loss and nutrient release during decomposition. However, a great deal of uncertainty remains concerning how other factors such as litter species or substrate quality might modify the effects of increased temperature on decomposition. Meanwhile, the temperature sensitivity of plant litter decay in tropical and subtropical forest ecosystems remains poorly resolved.

Methods

This study was designed to assess the effects of experimental warming on litter decomposition and nutrient release of two contrasting tree species (Schima superba and Machilus breviflora) by translocating model forest ecosystems from the high-elevation sites to the lower-elevation sites in subtropical China. Translocating model mountain evergreen broad-leaved forest (MEBF) to the altitude of 300 m and 30 m increased the average monthly soil temperature at 5 cm depth by 0.88 and 1.84 °C, respectively during the experimental period. Translocating model coniferous and broad-leaved mixed forest (CBMF) to the altitude of 30 m increased the average monthly soil temperature at 5 cm depth by 0.85 °C.

Results

We found that experimental warming accelerated litter decomposition in both model forest types, and the promoting efficiency was greater when the temperature increased. The litter with high quality (Schima superba) had stronger response to warming than low quality litter (Machilus breviflora). Warming accelerated Na, K, Mg, P, N and Ca release from Schima superba litter, but only simulated Ca release from Machilus breviflora litter. Overall, litter decomposition was controlled by the order: soil temperature > litter quality > soil moisture > litter incubation forest type under experimental warming in the subtropical China.

Conclusion

We conclude that leaf litter decomposition was facilitated by experimental warming in subtropical China. Litter species might modify the effects of increased temperature on litter decomposition; however, forest type has no effect on litter decomposition.

     

Leaf traits and performance vary with plant age and water availability in Artemisia californica

Background and AimsLeaf functional traits are strongly tied to growth strategies and ecological processes across species, but few efforts have linked intraspecific trait variation to performance across ontogenetic and environmental gradients. Plants are believed to shift towards more resource-conservative traits in stressful environments and as they age. However, uncertainty as to how intraspecific trait variation aligns with plant age and performance in the context of environmental variation may limit our ability to use traits to infer ecological processes at larger scales.MethodsWe measured leaf physiological and morphological traits, canopy volume and flowering effort for Artemisia californica (California sagebrush), a dominant shrub species in the coastal sage scrub community, under conditions of 50, 100 and 150 % ambient precipitation for 3 years.Key ResultsPlant age was a stronger driver of variation in traits and performance than water availability. Older plants demonstrated trait values consistent with a more conservative resource-use strategy, and trait values were less sensitive to drought. Several trait correlations were consistent across years and treatments; for example, plants with high photosynthetic rates tended to have high stomatal conductance, leaf nitrogen concentration and light-use efficiency. However, the trade-off between leaf construction and leaf nitrogen evident in older plants was absent for first-year plants. While few traits correlated with plant growth and flowering effort, we observed a positive correlation between leaf mass per area and performance in some groups of older plants.ConclusionsOverall, our results suggest that trait sensitivity to the environment is most visible during earlier stages of development, after which intraspecific trait variation and relationships may stabilize. While plant age plays a major role in intraspecific trait variation and sensitivity (and thus trait-based inferences), the direct influence of environment on growth and fecundity is just as critical to predicting plant performance in a changing environment.     

IGF-I and mechanical environment interact to modulate engineered cartilage development

Bovine calf articular chondrocytes were seeded onto biodegradable polyglycolic acid scaffolds and cultured for four weeks using in vitro systems providing different mechanical environments (static and mixed Petri dishes, static and mixed flasks, and rotating vessels) and different biochemical environments (medium with and without supplemental insulin-like growth factor I, IGF-I). Under all conditions, the resulting engineered tissue histologically resembled cartilage and contained its major constituents: glycosaminoglycans, collagen, and cells. The mechanical environment and supplemental IGF-I (a) independently modulated tissue morphology, growth, biochemical composition, and mechanical properties (equilibrium modulus) of engineered cartilage as previously reported; (b) interacted additively or in some cases nonadditively producing results not suggested by the independent responses, and (c) in combination produced tissue superior to that obtained by modifying these factors individually.     

Leaf functional traits of Neotropical savanna trees in relation to seasonal water deficit

The seasonal savannas (cerrados) of Central Brazil are characterized by a large diversity of evergreen and deciduous trees, which do not show a clear differentiation in terms of active rooting depth. Irrespective of the depth of the root system, expansion of new foliage in deciduous species occurs at the end of the dry season. In this study, we examined a suite of leaf traits related to C assimilation, water and nutrients (N, P) in five deciduous and six evergreen trees that were among the dominant families of cerrado vegetation. Maximum CO₂ assimilation on a mass basis (A_mass) was significantly correlated with leaf N and P, and specific leaf area (SLA; leaf area per unit of leaf mass). The highest leaf concentrations of both nutrients were measured in the newly mature leaves of deciduous species at the end of the dry period. The differences in terms of leaf N and P between evergreen and deciduous species decreased during the wet season. Deciduous species also invested less in the production of non-photosynthetic leaf tissues and produced leaves with higher SLA and maintained higher water use efficiency. Thus, deciduous species compensated for their shorter leaf payback period by maintaining higher potential payback capacity (higher values of A_mass) and lower leaf construction costs (higher SLA). Their short leafless period and the capacity to flush by the end of the dry season may also contribute to offset the longer payback period of evergreen species, although it may involve the higher cost of maintaining a deep-root system or a tight control of plant water balance in the shallow-rooted ones.     

Antioxidant proteins TSA and PAG interact synergistically with Presenilin to modulate Notch signaling in Drosophila

Alzheimer’s disease (AD) pathogenesis is characterized by senile plaques in the brain and evidence of oxidative damage. Oxidative stress may precede plaque formation in AD; however, the link between oxidative damage and plaque formation remains unknown. Presenilins are transmembrane proteins in which mutations lead to accelerated plaque formation and early-onset familial Alzheimer’s disease. Presenilins physically interact with two antioxidant enzymes thiol-specific antioxidant (TSA) and proliferation-associated gene (PAG) of the peroxiredoxin family. The functional consequences of these interactions are unclear. In the current study we expressed a presenilin transgene in Drosophila wing and sensory organ precursors of the fly. This caused phenotypes typical of Notch signaling loss-of-function mutations. We found that while expression of TSA or PAG alone produced no phenotype, co-expression of TSA and PAG with presenilin led to an enhanced Notch loss-of-function phenotype. This phenotype was more severe and more penetrant than that caused by the expression of Psn alone. In order to determine whether these phenotypes were indeed affecting Notch signaling, this experiment was performed in a genetic background carrying an activated Notch (Abruptex) allele. The phenotypes were almost completely rescued by this activated Notch allele. These results link peroxiredoxins with the in vivo function of Presenilin, which ultimately connects two key pathogenetic mechanisms in AD, namely, antioxidant activity and plaque formation, and raises the possibility of a role for peroxiredoxin family members in Alzheimer’s pathogenesis.     

Mapping genetic loci that interact with myostatin to affect growth traits

Myostatin, or GDF8, is an inhibitor of skeletal muscle growth. A non-functional myostatin mutation leads to a double muscling phenotype in some species, for example, mice, cattle and humans. Previous studies have indicated that there are loci in the genome that interact with myostatin to control backfat depth and other complex traits. We now report a quantitative trait loci (QTL) mapping study designed to identify loci that interact with myostatin to impact growth traits in mice. Body weight and average daily gain traits were collected on F2 progeny derived from a myostatin-null C57BL/6 strain by M16i cross. In all, 44 main effect QTL were detected above a 5% genome-wide significance threshold when an interval mapping method was used. An additional 37 QTL were identified to significantly interact with myostatin, sex or reciprocal cross. A total of 12 of these QTL interacted with myostatin genotype. These results provide a foundation for the further fine mapping of genome regions that harbor loci that interact with myostatin.     

Polyglutamine genes interact to modulate the severity and progression of neurodegeneration in Drosophila

The expansion of polyglutamine tracts in a variety of proteins causes devastating, dominantly inherited neurodegenerative diseases, including six forms of spinal cerebellar ataxia (SCA). Although a polyglutamine expansion encoded in a single allele of each of the responsible genes is sufficient for the onset of each disease, clinical observations suggest that interactions between these genes may affect disease progression. In a screen for modifiers of neurodegeneration due to SCA3 in Drosophila, we isolated atx2, the fly ortholog of the human gene that causes a related ataxia, SCA2. We show that the normal activity of Ataxin-2 (Atx2) is critical for SCA3 degeneration and that Atx2 activity hastens the onset of nuclear inclusions associated with SCA3. These activities depend on a conserved protein interaction domain of Atx2, the PAM2 motif, which mediates binding of cytoplasmic poly(A)-binding protein (PABP). We show here that PABP also influences SCA3-associated neurodegeneration. These studies indicate that the toxicity of one polyglutamine disease protein can be dramatically modulated by the normal activity of another. We propose that functional links between these genes are critical to disease severity and progression, such that therapeutics for one disease may be applicable to others.     

Leaf phenology is associated with soil water availability and xylem traits in a tropical dry forest

In tropical dry forests, spatial heterogeneity in soil water availability is thought to determine interspecific differences in key components of resource use strategies, such as leaf phenology and xylem function. To understand the environmental drivers of variation in leaf phenology and xylem function, we explored the relation of soil water potential to topographic metrics derived from a digital elevation model. Subsequently, we compared nine xylem hydraulic, mechanical and storage traits in 18 species in three phenological classes (readily deciduous, tardily deciduous, and evergreen) in the dry tropical forest of Chamela, Mexico. Soil water potential was negatively correlated with elevation, insolation and water flow accumulation. Evergreen species characterized low-elevation moist sites, whereas deciduous species dominated hills and dry sites. Overall, evergreen species had lower xylem specific conductivity than deciduous species, and tardily deciduous species were different from readily deciduous and evergreen species in five of eight xylem traits. In dry tropical forests, water availability promotes divergence in leaf phenology and xylem traits, ranging from low wood density, evergreen species in moist sites to a combination of low wood density, readily deciduous species plus high wood density, tardily deciduous species in dry sites.