Enhanced Immobilization of Cr(VI) in Soils by the Amendment of Rice Straw Char

This study investigated the effect of rice straw char (RSC) on the immobilization of Cr(VI) in soils. The Cr(VI) sorption experiments on the RSC and RSC-amended soils were conducted using the batch method. RSC exhibited Cr(VI) reduction capacity due to its black carbon content. The addition of RSC to the soils enhanced the overall Cr(VI) immobilization of the soils, which is primarily attributed to the Cr(VI) reduction capacity of RSC. The effects of RSC amendment on the Cr(VI) sorption of the soils increased with increasing RSC content in the soils and decreased with increasing pH or anion contents in the soil solutions. After Cr(VI) was sorbed by the soils, a portion of the Cr(VI) was converted to Cr(III) and the remainder was sorbed onto the soils. The presence of RSC in the soils decreased the portion of sorbed Cr(VI) in the soils and therefore lowered the potential remobilization of Cr(VI) from the soils. The results suggested that RSC amendment can be applied to develop a cost-effective method for immobilizing Cr(VI) in polluted soils, thus lowering the environmental risk from Cr(VI) toxicity.     

Distribution, transformation and bioavailability of trivalent and hexavalent chromium in contaminated soil

The purpose of this study was to investigate solid-phase distribution, transformation, and bioavailability of Cr in Cr(III) and Cr(VI) contaminated soils. The effects of EDTA treatment on solid-phase distribution of Cr in soils were also examined. The results show that Cr in both initially Cr(III)- and Cr(VI)-contaminated soils was mainly present in the organic matter bound fraction. Chromium had similar solid-phase distribution and similar overall binding intensity in both Cr(III)- and Cr(VI)-contaminated soils after a growing season. Transformation between Cr(III) and Cr(VI) took place in both Cr(III)- and Cr(VI)-treated soils. Chromium in the Cr(III)-contaminated soils was mostly present as Cr(III), while Cr in Cr(VI)-treated soils was mainly transformed into Cr(III). About 2% of Cr in native non-treated soils was found as Cr(VI). EDTA treatment increased Cr in soluble and exchangeable fraction in Cr(III)-treated soils. In both Cr(III)- and Cr(VI)-contaminated soils, Cr in oxide bound and organic matter bound     

Granite Rock Outcrops: An Extreme Environment for Soil Nematodes?

We studied soil nematode communities from the surface of granite flatrock outcrops in the eastern Piedmont region of the United States. The thin soils that develop here experience high light intensity and extreme fluctuations in temperature and moisture and host unique plant communities. We collected soils from outcrop microsites in Virginia (VA) and North Carolina (NC) in various stages of succession (Primitive, Minimal, and Mature) and compared soil properties and nematode communities to those of adjacent forest soils. Nematodes were present in most outcrop soils, with densities comparable to forest soils (P > 0.05). Nematode communities in Mature and Minimal soils had lower species richness than forest soils (P < 0.05) and contained more bacterial-feeders and fewer fungal-feeders (P < 0.05). Primitive soils contained either no nematodes (NC) or only a single species (Mesodorylaimus sp., VA). Nematode communities were similar between Mature and Minimal soils, according to trophic group representation, MI, PPI, EI, SI, and CI (P > 0.05). Forest soils had a higher PPI value (P < 0.05), but otherwise community indices were similar to outcrop soils (P > 0.05). Outcrop nematode communities failed to group together in a Bray-Curtis cluster analysis, indicating higher variability in community structure than the Forest soils, which did cluster together. A high proportion of the nematodes were extracted from outcrop soils in coiled form (33-89%), indicating that they used anhydrobiosis to persist in this unique environment.     

Distribution ofUrtica dioica L. in relation to edaphic factors

Summary Soils withU. dioica (a soils) were compared with soils 1–6 m away (b soils) with seemingly identical conditions except for absence of Urtica. The a soils had a higher EDTA–Cu concentration than b soils. The values for mineralised N, anion exchanged P, CEC, conductivity, Zn, Ca, Mg, K, organic matter and pH were alike in a- and b soils. Inorganic P was a limiting factor for Urtica when the P level, in general, was low (in this material not roadside soils). In the roadside soils the level of inorganic P was, in general, high and the content in a- and b soils was alike.     

The concentration and distribution of 137Cs in soils of forest and agricultural ecosystems of Tula Region

The paper deals with a comparative study of 137Cs contamination in forest, old arable and cultivated soils of Tula Region. Initial interception of Chernobyl derived 137Cs is higher in forest ecosystems: oak-forest > birch-forest > pine-forest > agricultural ecosystems. Vertical migration of 137Cs in deeper layers of soils was intensive in agricultural ecosystems: cultivated soils > old arable soils > birch-forest soils > oak-forest soils > pine-forest soils. In study have been evaluated spatial variability of 137Cs in soil and asymmetrical distribution, that is a skew to the right. Spatial heterogeneity of 137Cs in agricultural soils is much lower than in forest soils. For cultivated soil are determined the rate of resuspension, which equal to 6.1 x 10(-4) day(-1). For forest soils are described the 137Cs concentration in litter of different ecosystems. The role of main accumulation and barrier of 137Cs retain higher layers of soils (horizon A1(A1E) in forest, horizon Ap in agricultural ecosystems) in long-term forecast after Chernobyl accident.     

Temporal changes in chlorantraniliprole and indoxacarb in four midwestern soils and bioefficacy against the eastern subterranean termite (Isoptera: Rhinotermitidae)

Temporal changes in indoxacarb and chlorantraniliprole were determined in four midwestern soils by simulating commercial field applications of termiticides. Indoxacarb (0.0625 and 0.125%) and chlorantraniliprole (0.05 and 0.10%) were applied to each soil type in a rotating cement mixer to ensure uniform distribution of active ingredient (AI). Temporal and spatial changes in termiticide concentrations were determined by sampling soil cores subdivided at different depths (0-20, 20-40, and 40-61 cm) at various intervals up to 705 d after application. Percentage loss of indoxacarb was initially greater (0-180 d) than losses after 180 d. The lowest indoxacarb extractable concentrations were detected in soils closest to the surface. Chlorantraniliprole losses with time from all soils were slower than indoxacarb, with no differences observed with soil type or depth. Bioefficacy was evaluated in laboratory glass tube bioassays that monitored the distance of termite penetration into treated soils and resulting eastern subterranean termite, Reticulitermes flavipes (Kollar) (Isoptera: Rhinotermitidae), worker mortality. Bioassay data revealed that R. flavipes termites were unable to completely penetrate 50 mm of indoxacarb- and chlorantraniliprole treated soils at 0 d after treatment; however, termites were not deterred from foraging in these soils indicating no repellency to these termiticides. Termites completely penetrated (50 mm) soils treated with indoxacarb (0.0625%) by 360 d and complete penetration occurred in all soils treated with indoxacarb (0.0625 and 0.125%) by 705 d. Termites were unable to completely penetrate chlorantraniliprole-treated soils at 705 d. Mortality of termite workers was high in all chlorantraniliprole-treated soils at all sampling intervals. These data confirm that vertical differences in termiticide persistence occur in various soils.     

Abundance and diversity of viruses in six Delaware soils

The importance of viruses in marine microbial ecology has been established over the past decade. Specifically, viruses influence bacterial abundance and community composition through lysis and alter bacterial genetic diversity through transduction and lysogenic conversion. By contrast, the abundance and distribution of viruses in soils are almost completely unknown. This study describes the abundance and diversity of autochthonous viruses in six Delaware soils: two agricultural soils, two coastal plain forest soils, and two piedmont forest soils. Viral abundance was measured using epifluorescence microscopy, while viral diversity was assessed from morphological data obtained through transmission electron microscopy. Extracted soil virus communities were dominated by bacteriophages that demonstrated a wide range of capsid diameters (20 nm to 160 nm) and morphologies, including filamentous forms and phages with elongated capsids. The reciprocal Simpson's index suggests that forest soils harbor more diverse assemblages of viruses, particularly in terms of morphological distribution. Repeated extractions of virus-like particles (VLPs) from soils indicated that the initial round of extraction removes approximately 70% of extractable viruses. Higher VLP abundances were observed in forest soils (1.31 x 10(9) to 4.17 x 10(9) g(-1) dry weight) than in agricultural soils (8.7 x 10(8) to 1.1 x 10(9) g(-1) dry weight). Soil VLP abundance was significantly correlated to moisture content (r = 0.988) but not to soil texture. Land use (agricultural or forested) was significantly correlated to both bacterial (r = 0.885) and viral (r = 0.812) abundances, as were soil organic matter and water content. Thus, land use is a significant factor influencing viral abundance and diversity in soils.     

Legacy phosphorus in subtropical wetland soils: Influence of dairy, improved and unimproved pasture land use

Wetlands provide various ecosystem services. One of these services includes nutrient storage in soils. Soils retain and release nutrients such as phosphorus (P). This dynamic can be controlled by soil characteristics, overlying water quality, environmental conditions and historical nutrient loading. Historical nutrient loading contributes to a legacy of P stored in soils and this may influence present day P dynamics between soil and water. We quantified P characteristics of wetland soils and determined the availability and capacity of soils to retain additional P loadings. We sampled surface (0-10) and subsurface (10-30) wetland soils within dairy, improved and unimproved pastures. Surface soils had much greater concentrations of organic and inorganic P. Wetland soils in dairy had greatest concentrations of Ca and Mg, probably due to inputs of inorganic fertilizer. They also had much greater total P, inorganic P, and P sorption capacity; however, these soils were P saturated and had little capacity to retain additional P loading. Improved and unimproved pasture wetland soils had greatest amounts of organic P (>84%) and a capacity to store additional P loadings. Using multivariate statistics, we determined that rather than being different based on land use, wetland soils in improved and unimproved pasture were dissimilar based upon organic matter, organic P fractions, residual P, and soil metal (Fe and Al) content. The legacy of stored P in soils, particularly wetland soils from dairies, combined with best management practices (BMPs) to reduce nutrient loading to these systems, could contribute to a short-term release of soil-stored P to overlying wetland water.     

Soil carbon sequestration potential of permanent pasture and continuous cropping soils in New Zealand

Understanding soil organic carbon (SOC) sequestration is important to develop strategies to increase the SOC stock and, thereby, offset some of the increases in atmospheric carbon dioxide. Although the capacity of soils to store SOC in a stable form is commonly attributed to the fine (clay + fine silt) fraction, the properties of the fine fraction that determine the SOC stabilization capacity are poorly known. The aim of this study was to develop an improved model to estimate the SOC stabilization capacity of Allophanic (Andisols) and non‐Allophanic topsoils (0–15 cm) and, as a case study, to apply the model to predict the sequestration potential of pastoral soils across New Zealand. A quantile (90th) regression model, based on the specific surface area and extractable aluminium (pyrophosphate) content of soils, provided the best prediction of the upper limit of fine fraction carbon (FFC) (i.e. the stabilization capacity), but with different coefficients for Allophanic and non‐Allophanic soils. The carbon (C) saturation deficit was estimated as the difference between the stabilization capacity of individual soils and their current C concentration. For long‐term pastures, the mean saturation deficit of Allophanic soils (20.3 mg C g^?1) was greater than that of non‐Allophanic soils (16.3 mg C g^?1). The saturation deficit of cropped soils was 1.14–1.89 times that of pasture soils. The sequestration potential of pasture soils ranged from 10 t C ha^?1 (Ultic soils) to 42 t C ha^?1 (Melanic soils). Although meeting the estimated national soil C sequestration potential (124 Mt C) is unrealistic, improved management practices targeted to those soils with the greatest sequestration potential could contribute significantly to off‐setting New Zealand's greenhouse gas emissions. As the first national‐scale estimate of SOC sequestration potential that encompasses both Allophanic and non‐Allophanic soils, this serves as an informative case study for the international community.     

Molecular investigations into a globally important carbon pool: permafrost‐protected carbon in Alaskan soils

The fate of carbon (C) contained within permafrost in boreal forest environments is an important consideration for the current and future carbon cycle as soils warm in northern latitudes. Currently, little is known about the microbiology or chemistry of permafrost soils that may affect its decomposition once soils thaw. We tested the hypothesis that low microbial abundances and activities in permafrost soils limit decomposition rates compared with active layer soils. We examined active layer and permafrost soils near Fairbanks, AK, the Yukon River, and the Arctic Circle. Soils were incubated in the lab under aerobic and anaerobic conditions. Gas fluxes at ?5 and 5 °C were measured to calculate temperature response quotients (Q₁₀). The Q₁₀ was lower in permafrost soils (average 2.7) compared with active layer soils (average 7.5). Soil nutrients, leachable dissolved organic C (DOC) quality and quantity, and nuclear magnetic resonance spectroscopy of the soils revealed that the organic matter within permafrost soils is as labile, or even more so, than surface soils. Microbial abundances (fungi, bacteria, and subgroups: methanogens and Basidiomycetes) and exoenzyme activities involved in decomposition were lower in permafrost soils compared with active layer soils, which, together with the chemical data, supports the reduced Q₁₀ values. CH₄ fluxes were correlated with methanogen abundance and the highest CH₄ production came from active layer soils. These results suggest that permafrost soils have high inherent decomposability, but low microbial abundances and activities reduce the temperature sensitivity of C fluxes. Despite these inherent limitations, however, respiration per unit soil C was higher in permafrost soils compared with active layer soils, suggesting that decomposition and heterotrophic respiration may contribute to a positive feedback to warming of this eco region.     

Ectomycorrhizal fungal associates of Pinus contorta in soils associated with a hot spring in Norris Geyser Basin, Yellowstone National Park, Wyoming.

Molecular methods and comparisons of fruiting patterns (i.e., presence or absence of fungal fruiting bodies in different soil types) were used to determine ectomycorrhizal (EM) associates of Pinus contorta in soils associated with a thermal soil classified as ultra-acidic to extremely acidic (pH 2 to 4). EM were sampled by obtaining 36 soil cores from six paired plots (three cores each) of both thermal soils and forest soils directly adjacent to the thermal area. Fruiting bodies (mushrooms) were collected for molecular identification and to compare fruiting body (above-ground) diversity to below-ground diversity. Our results indicate (i) that there were significant decreases in both the level of EM infection (130 +/- 22 EM root tips/core in forest soil; 68 +/- 22 EM root tips/core in thermal soil) and EM fungal species richness (4.0 +/- 0.5 species/core in forest soil; 1.2 +/- 0.2 species/core in thermal soil) in soils associated with the thermal feature; (ii) that the EM mycota of thermal soils was comprised of a small set of dominant species and included very few rare species, while the EM mycota of forest soils contained a few dominant species and several rare EM fungal species; (iii) that Dermocybe phoenecius and a species of Inocybe, which was rare in forest soils, were the dominant EM fungal species in thermal soils; (iv) that other than the single Inocybe species, there was no overlap in the EM fungal communities of the forest and thermal soils; and (v) that the fungal species forming the majority of the above-ground fruiting structures in thermal soils (Pisolithus tinctorius, which is commonly used in remediation of acid soils) was not detected on a single EM root tip in either type of soil. Thus, P. tinctorius may have a different role in these thermal soils. Our results suggest that this species may not perform well in remediation of all acid soils and that factors such as pH, soil temperature, and soil chemistry may interact to influence EM fungal community structure. In addition, we identified at least one new species with potential for use in remediation of hot acidic soil.     

Comparative diversity of ammonia oxidizer 16S rRNA gene sequences in native, tilled, and successional soils.

Autotrophic ammonia oxidizer (AAO) populations in soils from native, tilled, and successional treatments at the Kellogg Biological Station Long-Term Ecological Research site in southwestern Michigan were compared to assess effects of disturbance on these bacteria. N fertilization effects on AAO populations were also evaluated with soils from fertilized microplots within the successional treatments. Population structures were characterized by PCR amplification of microbial community DNA with group-specific 16S rRNA gene (rDNA) primers, cloning of PCR products and clone hybridizations with group-specific probes, phylogenetic analysis of partial 16S rDNA sequences, and denaturing gradient gel electrophoresis (DGGE) analysis. Population sizes were estimated by using most-probable-number (MPN) media containing varied concentrations of ammonium sulfate. Tilled soils contained higher numbers than did native soils of culturable AAOs that were less sensitive to different ammonium concentrations in MPN media. Compared to sequences from native soils, partial 16S rDNA sequences from tilled soils were less diverse and grouped exclusively within Nitrosospira cluster 3. Native soils yielded sequences representing three different AAO clusters. Probes for Nitrosospira cluster 3 hybridized with DGGE blots from tilled and fertilized successional soils but not with blots from native or unfertilized successional soils. Hybridization results thus suggested a positive association between the Nitrosospira cluster 3 subgroup and soils amended with inorganic N. DGGE patterns for soils sampled from replicated plots of each treatment were nearly identical for tilled and native soils in both sampling years, indicating spatial and temporal reproducibility based on treatment.     

Comparative phylogenetic analysis of microbial communities in pristine and hydrocarbon-contaminated Alpine soils

A molecular characterization of pristine and petroleum hydrocarbon-contaminated Alpine soils sampled in Tyrol (Austria) was performed. To identify predominant bacteria, PCR-amplified 16S rRNA gene fragments from five pristine and nine contaminated soils were analysed using denaturing gradient gel electrophoresis (DGGE). Sequencing and phylogenetic analyses demonstrated that the majority of the DGGE bands represented bacteria in the Actinobacteria and Proteobacteria phyla: 18 and 73%, respectively, in pristine soils, compared with 20 and 76%, respectively, in contaminated soils. A different distribution pattern of bacterial classes in the Proteobacteria was observed between pristine and contaminated soils. The relative proportion of microorganisms belonging to the Alphaproteobacteria was larger in pristine (46%) than in contaminated (24%) soils, while Betaproteobacteria and Gammaproteobacteria were detected only in the hydrocarbon-contaminated soils. This result compared favourably with earlier work in which hydrocarbon-degradation genotypes, largely pseudomonads and Acinetobacter, belonging to the Gammaproteobacteria, were enriched following oil hydrocarbon contamination. In contrast, members of the Actinobacteria phylum, represented by Rhodococcus and Mycobacterium, were found in pristine soils where contamination events had not occurred. The results demonstrate a significant shift in the microbial community structure in Alpine soils following contamination. Furthermore, more potentially novel phylotypes were found in the pristine soils than in the contaminated soils.     

Comparative Diversity of Ammonia Oxidizer 16S rRNA Gene Sequences in Native, Tilled, and Successional Soils

Autotrophic ammonia oxidizer (AAO) populations in soils from native, tilled, and successional treatments at the Kellogg Biological Station Long-Term Ecological Research site in southwestern Michigan were compared to assess effects of disturbance on these bacteria. N fertilization effects on AAO populations were also evaluated with soils from fertilized microplots within the successional treatments. Population structures were characterized by PCR amplification of microbial community DNA with group-specific 16S rRNA gene (rDNA) primers, cloning of PCR products and clone hybridizations with group-specific probes, phylogenetic analysis of partial 16S rDNA sequences, and denaturing gradient gel electrophoresis (DGGE) analysis. Population sizes were estimated by using most-probable-number (MPN) media containing varied concentrations of ammonium sulfate. Tilled soils contained higher numbers than did native soils of culturable AAOs that were less sensitive to different ammonium concentrations in MPN media. Compared to sequences from native soils, partial 16S rDNA sequences from tilled soils were less diverse and grouped exclusively within Nitrosospira cluster 3. Native soils yielded sequences representing three different AAO clusters. Probes for Nitrosospira cluster 3 hybridized with DGGE blots from tilled and fertilized successional soils but not with blots from native or unfertilized successional soils. Hybridization results thus suggested a positive association between the Nitrosospira cluster 3 subgroup and soils amended with inorganic N. DGGE patterns for soils sampled from replicated plots of each treatment were nearly identical for tilled and native soils in both sampling years, indicating spatial and temporal reproducibility based on treatment.     

Effect of controlled redox conditions on metal solubility in acid sulfate soils

Rice (Oryza sativa L.) yields are constrained by Fe and Al toxicity and P deficiency on acid sulfate soils. In order to delineate the effects of pH and redox potential on metal availability in these soils, one or both of these parameters must be held constant. The objective of this study was to investigate metal behavior in acid sulfate soils in redox controlled suspensions. Three acid sulfate soils, Rangsit Very Acid (Rsa), Rangsit (Rs), and Mahaphot (Ma); a potential acid sulfate soil, Bang Pakong (Bg); and a non-acid marine soil, Bangkok (Bk) from Thailand were utilized. After pre-incubating the soils under anaerobic conditions, the soils were oxidized in 100 mV increments in a stepwise fashion (oxidation cycle). Afterwards, the oxidized soils were reduced in the same manner (reduction cycle). The pH's of all the soils decreased during the oxidation cycle and increased upon re-reduction. Water-soluble Fe decreased in all the soils (except Bg) as the Eh was increased in the oxidation cycle, whereas Fe increased in the reduction cycle when the Eh was decreased until -50 mV, at which time Fe sulfide precipitation was believed to occur. In the Bg soil, pyrite oxidation (which evidently started at +50 mV) brought about large increases in soluble Fe under oxidizing conditions, and soil pH decreased to 2.0. The influence of the redox status on Mn varied. Soluble Al increased with increases in Eh (due to decreases in pH) and vice versa in most of the soils. Water-soluble P decreased under oxidizing conditions and increased under reducing conditions. Ammonium acetate-extractable Fe and P were highly correlated (r=0.88), indicating that Fe plays an important role in P availability in acid sulfate soils.Contribution from the Laboratory for Wetland soils and Sediments, Louisiana State University, Baton Rouge, LA 70803.Contribution from the Laboratory for Wetland soils and Sediments, Louisiana State University, Baton Rouge, LA 70803.     

Effectiveness of Vetiver Grass (Vetiveria Zizanioides L. Nash) for Phytoremediation of Endosulfan in Two Cotton Soils from Burkina Faso

The influence of vetiver grass (Vetiveria zizanioides) on the fate of endosulfan was studied using a vertisol and a lixisol soils from cotton-growing areas of Burkina Faso. Endosulfan adsorption isotherms were prepared for planted and unplanted soils. Pot experiments were then conducted for six months. For both soils, endosulfan adsorption was higher on planted soils (K_f= 6.53–9.73 mg^1–nLⁿkg^–1) than on unplanted soils (6.27–7.24 mg^1–nLⁿkg^–1). In unplanted soils, vertisol adsorbed more endosulfan than lixisol. From the pot experiments, the estimated half-lives of endosulfan in unplanted soils (40.6 to 43.1 days) were higher than in planted soils (34.5 to 40.6 days) containing a greater number of endosulfan-degrading microorganisms. Six months after treatment, endosulfan was not detected in soils. The effectiveness of vetiver in promoting adsorption and the disappearance of endosulfan in both studied soils should be validated on the cotton plot scale in Burkina Faso.     

Soil physical strength rather than excess ethylene reduces root elongation of Eucalyptus seedlings in mechanically impeded sandy soils

Seedling establishment in heavily compact soils is hampered by poor root growth caused by soil chemical or physical factors. This study aims to determine the role of ethylene in regulating root elongation through mechanically impeded sandy soils using Eucalyptus todtiana F. Muell seedlings. Concentrations of ethephon (1, 10, and 100???M) were added to non-compact soils, and endogenous ethylene production from seedling roots was compared to ethylene production of roots grown in physically compacted field soils (98.6?% sand). The ethylene-inhibitor 3,5-diiodo-4-hydroxybenzoic acid (DIHB) (0.1???M) was included for each treatment to counteract the negative effects of excess ethylene or compact soils on root elongation. Root elongation was reduced in high ethylene soils by 49?% and high bulk density soils by 44?%. Root ethylene production increased ninefold in roots grown in the high ethylene environment (100???M), but decreased 80?% in compact soils. The use of DIHB did not alter root length and produced varying results with respect to ethylene production, suggesting an interaction effect involving high amounts of soil ethylene. While ethylene regulates root growth, the physical strength of sandy soils is the major factor limiting root elongation in mechanically impeded soils.     

Effect of afforestation and reforestation of pastures on the activity and population dynamics of methanotrophic bacteria

We investigated the effect of afforestation and reforestation of pastures on methane oxidation and the methanotrophic communities in soils from three different New Zealand sites. Methane oxidation was measured in soils from two pine (Pinus radiata) forests and one shrubland (mainly Kunzea ericoides var. ericoides) and three adjacent permanent pastures. The methane oxidation rate was consistently higher in the pine forest or shrubland soils than in the adjacent pasture soils. A combination of phospholipid fatty acid (PLFA) and stable isotope probing (SIP) analyses of these soils revealed that different methanotrophic communities were active in soils under the different vegetations. The C18 PLFAs (signature of type II methanotrophs) predominated under pine and shrublands, and C16 PLFAs (type I methanotrophs) predominated under pastures. Analysis of the methanotrophs by molecular methods revealed further differences in methanotrophic community structure under the different vegetation types. Cloning and sequencing and terminal-restriction fragment length polymorphism analysis of the particulate methane oxygenase gene (pmoA) from different samples confirmed the PLFA-SIP results that methanotrophic bacteria related to type II methanotrophs were dominant in pine forest and shrubland, and type I methanotrophs (related to Methylococcus capsulatus) were dominant in all pasture soils. We report that afforestation and reforestation of pastures caused changes in methane oxidation by altering the community structure of methanotrophic bacteria in these soils.     

Soil Ecology of Coccidioides immitis at Amerindian Middens in California

Outbreaks of coccidioidomycosis and isolation of Coccidioides immitis have been reported from Amerindian middens. This study was undertaken to determine the most important ecological component(s) for the occurrence of C. immitis at archeological sites. Soils from 10 former Indian villages with no prior history of coccidioidal infection were collected and cultured. The physicochemical properties of the midden soils were compared with nonmidden soils and positive soils. The following theories for the sporadic distribution of the pathogen in the soil of the Lower Sonoran Life Zone were considered: (i) the Larrea tridentata (creosote bush) association, (ii) the preference for saline soils, (iii) isolation near rodent burrows, and (iv) animals as possible agents of dispersal. Results showed that a high percentage of the midden soils contained C. immitis, whereas none of the adjacent, nonmidden soils yielded the fungus. Physicochemical analyses revealed that the dark color and alkaline pH of the midden soils were due to past organic contamination. Repeated isolations were made from soils with low to moderate alkalinity. Alkalinity and sandy texture were consistent features of all soils in this study. However, the lack of any reports of nonsandy infested soils possibly indicates that the sandy texture and alkalinity may be factors in the distribution of this fungus. The organic content, soil parent material, and color were not important in the soil ecology. L. tridentata was not significant in the macroflora at the infested sites surveyed. Samples collected without reference to rodent burrows yielded a high percentage of recoveries. Animals, although not the major natural reservoir, cannot be ignored as possible factors in the ecology of C. immitis.