Zooplankton and meiobenthos diversity at the intertidal sandy shores of Jizan and Farasan coastal areas of Red Sea

Distinctive studies were conducted for the identification of meiobenthos and zooplankton at Farasan Islands and Jizan sandy shores. The present work compares the meiobenthos and zooplankton communities at Alhsas sandy shore at Farasan Islands and As-Suways sandy shore at Jizan. Population density, species richness and Shannon-Weiner diversity index were determined for meiobenthos and zooplankton inhabiting both the studied sites. Water criteria; surface water temperature, pH and conductivity were determined for each investigated site. Eleven zooplankton species were defined at Alhsas sandy shore Farasan, nine species were identified at the littoral zone at As-Suways sandy shore, Jizan. Ten meiobenthos species were defined at Alhsas site, Farasan. Only eight meiobenthos species were defined at the intertidal zone of As-Suways site, Jizan. The results were discussed to highlight the effect of water criteria on the spatial distribution of zooplankton and meiobenthos at the investigated sites.     

Quantitative distribution of meiobenthos and the structure of the free-living nematode community of the mangrove intertidal zone in Nha Trang bay (Vietnam) in the South China Sea

Meiobenthic studies were performed in an intertidal area in the Be River estuary (Nha Trang Bay, Vietnam). The study area is an area of riverine-type mangroves that have been heavily damaged by human impacts, including timber cutting and waste. Three biotopes are situated in the middle intertidal zone: a fringe of Rhizophora stylosa, a bush area composed of Avicennia aff. alba behind it, and muddy sand with fiddler crabs (Uca spp.), which is free of mangrove plants. Three replicate samples of meiobenthos were collected in each biotope and each sample was subdivided into two layers: 0–1 and 1–4 cm. The abundance of metazoan meiobenthos varied from 735 specimens/10 cm² in the Uca spp. biotope to 244 specimens/10 cm² beneath the Rhizophora trees. Six taxonomic groups of high rank were found among the meiofauna: Nematoda, Copepoda (Harpacticoida), Oligochaeta, Turbellaria, Kinorhyncha, and Foraminifera (Allogromiida). The spatial variability of meiobenthos and its key taxa was estimated and the spatial distribution patterns of free-living nematode species were described. About 90% of the total meiobenthos inhabited the upper 0–1 cm of the sediments. Nematodes constituted 90–95% of all meiobenthic organisms in the samples. A total of 48 species of free-living nematodes were found in the investigated mangrove intertidal area. In terms of species composition and set of dominants, the nematode community is comprised of three local assemblages: one of them inhabits the uppermost centimeter in the Uca and Avicennia biocenoses; the second assemblage occupies the upper sediment layer in the Rhizophora stand; a less abundant but specific assemblage of several nematode species occurs in the subsurface sediments at all three sites.     

Annual Changes in Meiobenthos Community Structure in Alekseev Bight, Sea of Japan

We performed a comparative analysis of the taxonomical composition and population density of the meiobenthos and substrate types of Alekseev Bight, Sea of Japan, throughout the period when a plantation for mariculture of Japanese scallop was exploited in the bight and for a decade after the plantation had been removed. We found that silting of substrates in the bight decreased and the number of taxonomical groups that constituted the meiobenthos increased. The nematodes that, earlier, dominated the meiobenthos in terms of population density were later exceeded by foraminiferans, the species diversity of which increased. Changes are revealed in the composition of the dominant species of these groups.     

The Meiobenthos in the Area of Japanese Scallop Cultivation in Minonosok Bay (Peter the Great Bay,Sea of Japan)

In Minonosok Bay, in a region of long-term industrial mariculture of mollusks, a steady biohydrochemical complex with increased organic matter content has been formed, in which the meiobenthos community was represented by a rather complete set of taxonomic groups of low population density. There were 16 groups (order, class) of the meiobenthos revealed, and the greatest population density was recorded in the central part of the bay under installations with suspended mollusks, (333000 ind./m²). Nematodes dominated in the eumeiobenthos; however, crustaceans prevailed in the bottom water layer and sediments at stations with increased oxygen content. Bivalves and gastropods dominated in the pseudomeiobenthos. Correlation analysis has revealed the dependence of the population density of the total meiobenthos and eumeiobenthos on the type of ground. There were 42 nematode species revealed; Axonolaimus seticaudatus, Enoplolaimus medius, Daptonema sp., Paracomesoma sp., and Oncholaimium paraolium dominated. Three nematode taxocens were discriminated by dominating species in the population density and results of cluster analysis of the data. Detritivorous nematodes prevailed in all types of ground. A correlation was found between the index of species diversity of nematodes and the content of organic carbon in the ground.     

Community ecology of the metazoan parasites of white sea catfish, Netuma barba (Osteichthyes: Ariidae), from the coastal zone of the state of Rio De Janeiro, Brazil.

Between March 2000 and April 2001, 63 specimens of N. barba from Angra dos Reis, coastal zone of the State of Rio de Janeiro (23 degrees 0' S, 44 degrees 19' W), Brazil, were necropsied to study their infracommunities of metazoan parasites. Fifteen species of metazoan parasites were collected: 2 digeneans, 1 monogenean, 2 cestodes, 1 acantocephalan, 2 nematodes, 6 copepods, and 1 hirudinean. Ninety-six percent of the catfishes were parasitized by at least one metazoan parasite species. A total of 646 individual parasites was collected, with mean of 10.3 +/- 16.6 parasites/fish. The copepods were 37.5% of the total parasite specimens collected. Lepeophtheirus monacanthus was the most dominant species and the only species with abundance positively correlated with the host total length. Host sex did not influence parasite prevalence or mean abundance of any species. The mean diversity in the infracommunities of N. barba was H = 0.130 +/- 0.115 with no correlation with host's total length and without differences in relation to sex of the host. One pair of endoparasites (Dinosoma clupeola and Pseudoacanthostomum floridensis) showed positive association and covariation between their abundances and prevalences. The parasite community of N. barba from Rio de Janeiro can be defined as a complex of species with low prevalence and abundance and with scarcity of interspecific associations. However, because of both the presence of assemblages of sympatric ariid species as well as the spawning behavior characteristic of these fishes, additional comparative studies of the parasite component communities of ariids are necessaries to elucidate this pattern.     

Effect of the Razdol’naya River on structure of the free-living nematode community of the Amursky Bay,Sea of Japan

The effect of the Razdol’naya River on the littoral and sublittoral nematode community was studied in the innermost part of the Amursky Bay. Thanks to the seasonal abundance of juveniles of macrobenthic animals, pseudomacrobenthic species prevailed in the meiobenthos littoral community. Juvenile amphipods dominated (39.5%), the percentage of nematodes was 18.4% (45 species). The nematodes dominated in the meiobenthos community (65.7%, 71 species) at the sublittoral zone. The similarity of the species structure of littoral and sublittoral nematodes reached 36.5%. Low population density (2.6±1.7 thousand ind/m²) and poor species diversity of nematodes (7 species), the dominating form being Oncholaimium paraolium, were recorded at the littoral zone, which was subjected to direct riverine influence (1‰salinity). The correlation analysis revealed no relationship between salinity and population density of nematodes at the littoral zone. At the sublittoral zone (at stations of salinity less than 2.85‰) the parameters of population density (73.9±32.3 thousand ind/m²) and species diversity (12 species) of nematodes were the lowest, Parodontophora timmica dominated. A poor expressed dependence between the density of nematode populations and salinity was revealed. The correlation between the average size of ground particles and population density of nematodes was recorded. The greatest similarity of the species structure of littoral and sublittoral nematodes (26.67%) was recorded on gravel-sand bottoms.     

Foraminifera and Nematoda community within the area of Ahnfeltia tobuchiensis field in Stark Strait (Peter the Great Bay of the Sea of Japan)

In August of 2006 in Stark Strait (in the Peter the Great Bay) Foraminifera and Nematoda communities were investigated at two stations: in bottom under a red alga Ahnfeltia tobuchiensis bed and on a site located outside of the bed. Bottom sediments at the stations are represented by sands of various silting extent. Foraminifera dominated at both stations, the second place by abundance was occupied by Nematoda. Extremely high population density of meiobenthos, 14278.9 ± 4623.1 thousand sp./m², was observed under the Ahnfeltia bed. The foraminifera percentage was 98.1%, which was probably connected with the mass development of diatom algae on Ahnfeltia. A high degree of domination of one Foraminifera species was recorded—Cribroelphidium frigidum. Nematoda constituted 1.5% with the prevalence of Comesomatidae family representatives. At the station situated outside of Ahnfeltia field mean population density of meiobenthos was an order lower—1731.8 ± 621.3 thousand sp./m². Foraminifera constituted 63.8% of the total meiobenthos density with Eggerella advena as the dominating species. Among Nematoda (12.5%) Paracanthonchus macrodon, Axonolaimus seticaudatus and Monoposthia latiannulata were dominant. Foraminifera and Nematoda community under Ahnfeltia bed, where bottom sediments are more silted, had low indices of species diversity and a high degree of domination.     

苏州工业园区湖泊后生浮游动物群落结构及影响因子

苏州工业园区地处长江流域下游,随着城市化进程的不断推进,园区水生态系统结构与功能的稳定面临严峻考验。浮游动物作为水生态系统的重要组成部分,探究其群落结构的形成机制对生物多样性保护及生态系统健康发展具有重要意义。为深入了解苏州工业园区五个主要湖泊后生浮游动物群落结构的动态变化及影响因子,于2018年7月至2019年6月进行4次调查。研究共检出后生浮游动物112种（轮虫65种、枝角类29种、桡足类18种）,其中优势种12种（轮虫10种、枝角类和桡足类各1种）。Jaccard相似性分析表明,湖泊间后生浮游动物物种组成整体处于中等相似水平。后生浮游动物密度呈现出显著的季节和湖泊差异,而生物量、Shannon-Wiener多样性指数、Pielou均匀度指数以及Margalef丰富度指数仅存在显著的季节差异。聚类分析结果表明,夏季和秋季后生浮游动物群落结构最为相似。RDA分析表明,水温、溶解氧和pH是影响园区湖泊后生浮游动物群落结构的主要环境因子。Pearson相关性分析表明,湖泊面积与后生浮游动物群落结构无显著相关关系,样点近岸距离与生物量具有显著的正相关关系。基于水质评价标准和物种多样性指数可知,园区湖泊水质整体处于轻-中度污染水平。研究表明苏州工业园区五大湖泊后生浮游动物群落结构表现出同质化趋势;季节变化、环境因子以及样点近岸距离是调控群落结构形成的主要因素。     

Conversion from natural wetlands to paddy field alters the composition of soil bacterial communities in Sanjiang Plain,Northeast China

The Sanjiang Plain is the largest freshwater wetlands in Northeast China. In order to feed the growing population, about 84 % of the wetlands in this area have been converted to farmland, especially to paddy fields, since the 1950s. However, little is known about the influence of this conversion on soil microbial community composition. In this study, soil samples were collected from two natural wetlands dominated by plant species Carex lasiocarpa and Deyeuxia angustifolia and from a neighboring paddy field that was changed from wetland more than 10 years ago. The composition and diversity of bacterial communities in the soils were estimated by clone library analysis of nearly full length of 16S rDNA sequences. The results revealed that bacterial diversity was higher in paddy fields, and that the composition of bacterial communities differed among the three samples; the difference was more notable between the paddy field and two natural wetlands than between two natural wetlands. The distribution of clones into different bacterial phyla differed among soil samples, and the conversion from natural wetlands to paddy field increased the abundance of Proteobacteria and Firmicutes but decreased the abundance of Chloroflexi. About 63 % and 71 % of clones from two natural wetlands and 49 % of clones from the paddy field had <93 % similarity with known bacteria, suggesting that the majority of bacteria in natural wetland soils in the Sanjiang Plain are phylogenetically novel. In general, this study demonstrated that long-term conversion from natural wetlands to paddy field changes soil bacterial communities in the Sanjiang Plain.     

Seasonal patterns of reproductive activities among deep-sea benthic copepod species in the bathyal Sagami Bay, central Japan

Little is known about the life histories of the deep-sea metazoan meiobenthos. At a bathyal site (depth 1430 m) in Sagami Bay, central Japan, temporal changes in abundance and reproductive activity of deep-sea benthic copepods were investigated for eight abundant species that composed about 50% of total individuals, based on samples collected before fresh organic matter increased in the sediment (December 1996 and 1997), 1 month thereafter (June 1997 and May 1998), and a few months after the event (August 1997 and 1998). Densities of adults of these species fluctuated among samples (the total abundance was 5–30 individuals/10 cm²), but did not show any seasonal trend. Strong evidence for competitive relationships among species could not be detected, and there was no significant negative correlation in abundance between any species pair. The percentage of ovigerous females among total adult females of Schizopera sp. 1 differed significantly by month. Furthermore, the adult sex ratio of the species appeared to fluctuate temporally. These suggest a temporal change in reproductive activity and synchronized growth of Schizopera sp. 1. There was no temporal trend, however, in any parameter for the other species. Mean egg number per brood and egg diameter differed among species, but did not change seasonally in any species. Our study suggests the rarity of seasonal breeding species among the deep-sea benthic copepods, one of the major metazoan meiofaunal groups, as well as among other macro-megafaunal metazoans.     

Community ecology of metazoan parasites of the anchovy Anchoa tricolor (Osteichthyes: Engraulidae) from the coastal zone of the State of Rio de Janeiro, Brazil.

Between October 2001 and March 2002, 103 specimens of A. tricolor from Angra dos Reis (23 degrees 01' S, 44 degrees 19' W), in the coastal zone of the State of Rio de Janeiro, Brazil, were analyzed in order to study their metazoan parasite infracommunities. Ten species of metazoan parasites were collected: 4 digeneans, 1 cestode, 1 acantocephalan, 2 nematodes, 1 copepod, and 1 hirudinean; 77.7% of the fishes were parasitized by one or more metazoan, with a mean of 3.5 +/- 6.2 parasite/fish. Digenean was the most dominant with 4 species that accounted for 53.2% of the total parasites collected; Ergasilus sp. was the most abundant species. Abundance and prevalence of Parahemiurus merus (Linton, 1910) were positively correlated with the total length of host. Relationships between total body length of fish and both total parasite abundance and mean parasite species richness were observed. Mean parasite diversity of species was correlated to host's total length, with significant differences found between male and female fishes. Two pairs of larval species showed significant positive association and covariation. The metazoan parasite infracommunities of A. tricolor presented dominance of larval endoparasites; correlation of parasite abundance, diversity, and species richness with host total length; and low number of parasite interspecific relationships. The parasite community of A. tricolor showed some similarities with the parasite community of another South American Atlantic engraulid.     

Metagenomic analysis of the marine coastal invertebrates of South Korea as assessed by Ilumina MiSeq

Metagenomic analysis was carried out for the first time on the marine coastal invertebrates of South Korea. Samples collected from coastal areas of Korea were filtered through a 63 µm mesh, then their 18S rDNA V4 regions were amplified. High-throughput sequencing of PCR amplicons using Illumina MiSeq and BLAST against the SILVA database showed that a total of 319 eukaryotic Operational Taxonomic Units were identified at the species level. Annelida, Arthropoda, Mollusca, Nematoda, and Platyhelminthes and for 92.23% of the total 103 metazoan species belonging to 101 genera, 75 families, and 10 phyla. Of these, several taxa previously unreported to exist in Korea were detected at the family level compared with the integrated database from three main Korean biodiversity DBs (MABIK, KOMBIS, and MRBR). Analysis of beta diversity of the community structure of invertebrates indicated that the composition of marine invertebrates is likely to be affected by habitat type rather than geographical distance. The present study showed that metagenomic high-throughput technology can be used to unravel species diversity and for various studies regarding marine invertebrate community structure.     

The palaeoecology of the latest Jurassic–earliest Cretaceous hydrocarbon seep carbonates from Spitsbergen,Svalbard

Latest Jurassic–earliest Cretaceous hydrocarbon seeps from Spitsbergen, Svalbard, are known to contain unusual fauna, lacking most of the species characteristic for roughly coeval seep deposits. This study summarizes and analyses the fauna from 16 seep carbonate bodies from Spitsbergen to explain its composition. The seeps formed in a shallow epicontinental sea with widespread deposition of fine‐grained, organic‐rich sediments. They are spread over a relatively large area and are positioned roughly in the same interval, indicating seepage over extensive areas of the palaeo‐Barents Sea. The seep fauna is very species rich and with low dominance, comprising 54 species, with a composition similar to that of Jurassic–Cretaceous normal‐marine environments of other Boreal seas. Seep‐restricted fauna is not abundant and is represented by four species only. Hokkaidoconchids and possible siboglinid worm tubes characteristic for high sulphide fluxes are rare. Apart from seep‐restricted sulphide‐mining lucinid and thyasirid bivalves, chemosymbiosis was also a source of nourishment for background solemyid and nucinellid bivalves, all of which take sulphide from infaunal sources. This all suggests a relatively weak sulphide flux. The high diversity and low dominance of the fauna and significant richness and abundance of background species is typical for shallow water seeps.     

Influence of anthropogenic pollution on ostracod assemblages of Amurskii Bay,Sea of Japan

The species composition and distribution of ostracods were investigated at two sites with different pollution levels on the eastern coast of Amurskii Bay within the limits of Vladivostok City. A total of 41 species were found. In all, thirty-eight species (28 of them alive) were found at the first site between Krasnyi and Groznyi capes. Another twenty-seven species were found at a depth of 1.5–3 m in the phytal zone with a diversity of microbiotopes. As the bottom became increasingly silty and the depth increased, the number of species decreased. A total of 25 species (only 15 of them alive) were found at the mouth of the Vtoraya Rechka River, which is heavily polluted by municipal and industrial sewage discharge. No valves of ostracods were found in surface sediments on silts at a depth down to 5.5m. At 4 m, only 2 species were found alive on stones overgrown with Saccharina japonica. At 500 m from a sewage discharge site, few ostracod valves were found that seemed to have died recently. At a distance of over 1 km, an ostracod assemblage typical of the silty substrates of Amurskii Bay was found below a 7 m depth (21 species, 12 of them alive).     

Assessment of bacterial community structure in a long-term copper-polluted ex-vineyard soil

The influence of long-term copper contamination on the diversity of bacterial communities was investigated in an ex-vineyard soil. Two sites of the same area but exhibiting different 3-fold exchangeable copper (Ex-Cu) concentrations were analysed. Culturable bacterial community structure was assessed using a variety of approaches: determination of culturable bacteria number, analyses of 132 isolates, and denaturing gradient gel lectrophoresis (DGGE) patterns of bacterial biomass grown on agar plates and of soil DNA. There was no significant difference in the number of total heterotrophs at the two sites, whereas the percentage of fast-growing bacteria growing in 1 day, was lower at the site with the higher Ex-Cu content. A high percentage of Cu-tolerant bacteria was found in both sites (63-70%) and it was relatively independent of the Cu content. Shifts in species composition of the culturable bacterial community were detected by analysing isolates from the two soils, Gram-positive bacteria prevailed in the less-polluted soil while Gram-negative bacteria in the more-polluted soil. Each sample site had a community with a different metal resistance pattern. Our study seems to indicate that in this soil ecosystem, copper influenced the culturable bacterial communities, affecting the structural diversity and altering some of the metal resistance of the microorganisms. The Sorensen similarity index calculated on DGGE profiles of 16S rDNA of total and culturable bacterial communities indicated a different species composition at the two sites, although both sites had the same biodiversity degree and different dominance.     

芡实分区刈割试验对陈瑶湖后生浮游动物群落结构的影响

陈瑶湖流域是长江中下游重要的水禽省级自然保护区,近年来随着农业的发展,湖区存在芡实种植过密,汛期影响行洪的隐患,对湖区的水生态系统结构与功能的稳定性造成严重影响。为研究芡实分区刈割试验对陈瑶湖后生浮游动物群落结构的影响,于2019年8月期间对陈瑶湖后生浮游动物进行调查。共鉴定出后生浮游动物15科22属40种,其中轮虫12属26种,枝角类8属11种,桡足类2属3种,群落结构主要以轮虫为主,后生浮游动物种类分布时空上无显著差异(P>0.05)。共发现优势种8属10种,分别为萼花臂尾轮虫(Brachionus calyciflorus)、角突臂尾轮虫(Brachionus angularis)、剪形臂尾轮虫(Brachionus forficula)、螺形龟甲轮虫(Keratella cochlearis)、囊形单趾轮虫(Monostyla bulla)、蹄形腔轮虫(Lecane ungulata)、针簇多肢轮虫(Polyarthra trigla)、迈氏三肢轮虫(Filinia maior)、长额象鼻溞(Bosmina longirostris)和广布中剑水蚤(Mesocyclops...     

北部湾海域小型底栖动物丰度和生物量

根据2008年10月4日至8日北部湾海域生态环境综合调查资料,对北部湾海域小型底栖动物的类群组成、丰度和生物量分布进行了分析研究,结果表明,研究海域的小型底栖动物平均丰度约为399.09±452.20 had·10cm^-2,平均生物量约为359.56±324.45μg·10cm^-2;按丰度来讲,分选出的14个类群中,自由生活海洋线虫的丰度为最优势,约占总丰度的92.69%,其次为底栖桡足类和多毛类,分别约占总丰度的3.28%和2.47%;线虫、多毛类和桡足类分别约占总生物量的41.16%、38.34%和6.76%。研究海域的钦州、防城港市沿岸海区小型底栖动物平均丰度相对较高,其平均丰度约为614.98±799.63 ind·10cm^-2;涠洲岛周边海区和北海南部近岸海区平均丰度分别约为481.68±240.03 ind·10cm^-2和278.14±126.38 ind·10cm^-2;对照海区的小型底栖动物平均丰度约仅有197.37±116.72 ind·10cm^-2。根据各站位小型底栖生物的种类组成及其丰度进行了多样性分析,各站位丰富度指数介于0.466～1.516之间,均匀度指数介于0.203～1.13之间,Shannon-Weiner指数(H')介于0.141～0.783之间。根据类群组成及其丰度进行组平均法聚类分析,把研究海区各站位分成了3个不同的底栖生物群落。研究海区线虫和桡足类丰度的比率变化范围在5.02～223.83之间。     

Annual Patterns in Bacterioplankton Community Variability in a Humic Lake

Bacterioplankton community composition (BCC) was monitored in a shallow humic lake in northern Wisconsin, USA, over 3 years using automated ribosomal intergenic spacer analysis (ARISA). Comparison of ARISA profiles of bacterial communities over time indicated that BCC was highly variable on a seasonal and annual scale. Nonmetric multidimensional scaling (MDS) analysis indicated little similarity in BCC from year to year. Nevertheless, annual patterns in bacterioplankton community diversity were observed. Trends in bacterioplankton community diversity were correlated to annual patterns in community succession observed for phytoplankton and zooplankton populations, consistent with the notion that food web interactions affect bacterioplankton community structure in this humic lake. Bacterioplankton communities experience a dramatic drop in richness and abundance each year in early summer, concurrent with an increase in the abundance of both mixotrophic and heterotrophic flagellates. A second drop in richness, but not abundance, is observed each year in late summer, coinciding with an intense bloom of the nonphagotrophic dinoflagellate Peridinium limbatum. A relationship between bacterial community composition, size, and abundance and the population dynamics of Daphnia was also observed. The noted synchrony between these major population and species shifts suggests that linkages across trophic levels play a role in determining the annual time course of events for the microbial and metazoan components of the plankton.     

The response of meiofauna to sediment disturbance

The meiobenthos inhabiting an intertidal mud bar were disturbed by hand-turning the sediment of a 9-m² area with a shovel and monitoring the subsequent recolonization process.The immediate impact of the disturbance on this community dominated by Nematoda (91%), Copepoda (4%) and Foraminifera (4%), was to remove more than 70% of the meiofauna. However, after only one tidal cycle, total numbers of nematodes, copepods, foraminiferans and other meiofauna taxa were at predisturbance and control (similar 9-m² site on the same flat) density values. Nematode species assemblages rapidly adapted to the disturbance and changed little over time. Foraminifera showed insignificant fluidized flocculent upper layer of sediment was probably the major dispersal mechanism in this community, and foraminiferans seem to be the least able to use this mechanism.The meiobenthos of this habitat is described as a well-dispersed and dynamic community able to rapidly adjust to small-scale disturbances. However, the meiobenthos may not recover from all disturbances, because resilience was only determined for a limited physical disturbance.