Modeling the formation of Early Stone Age artifact concentrations

The nature of stone artifact concentrations at early Plio-Pleistocene sites in East Africa is evaluated with regard to hominid transport behaviors responsible for their formation. These archaeological occurrences indicate ranging behaviors involving deliberate and repeated transport of flaked stone artifacts. The stone transported to archaeological sites within the time range of Homo habilis indicates planned transport of tools or material for tool manufacture to an extent far beyond transport behaviors reported among living apes, even stone hammer-using chimpanzees. Analysis of technological evidence in a lithic assemblage at a Plio-Pleistocene site at Koobi Fora (c. 1·5 ya) indicates on-site manufacturing activities and transport of flaked stone both to and from the site locale. Possible explanations for transport of stone artifacts are discussed in view of hominid strategies of environmental exploitation and resource utilization. A model is proposed for planned, habitual transport of artifacts by hominids positively correlated with distance of planned foraging range. In this model, larger-scale sites tended to develop at locales favorably located near abundant resources, where stone imports were high but export was relaxed due to the proximity of resources to be processed.     

The evolution of the Hox cluster: insights from outgroups

Two burgeoning research trends are helping to reconstruct the evolution of the Hox cluster with greater detail and clarity. First, Hox genes are being studied in a broader phylogenetic sampling of taxa: the past year has witnessed important new data from teleost fishes, onychophorans, myriapods, polychaetes, glossiphoniid leeches, ribbon worms, and sea anemones. Second, commonly accepted notions of animal relationships are being challenged by alternative phylogenetic hypotheses that are causing us to rethink the evolutionary relationships of important metazoan lineages, especially arthropods, annelids, nematodes, and platyhelminthes.     

The monophyly and evolution of Cynara L. (Asteraceae) sensu lato: evidence from the Internal Transcribed Spacer region of nrDNA

The monophyly and evolution of Cynara was investigated using ITS sequence data. Parsimony analysis supports the monophyly of Cynara sensu lato, i.e. including the distinctive taxa C. humilis and C. tournefortii. This contradicts the recent decision to create a new monotypic genus Arcyna for C. tournefortii. A hypothesised close relationship between C. tournefortii and Silybum Adans. is also refuted. Four of the five species of Cynara, for which multiple accessions were sequenced, were shown to be monophyletic but C. baetica was found to be non-monophyletic. Free energy estimates for ITS1 secondary structure and conservation of the 5.8S region suggest that this is not due to the occurrence of pseudogenes. Hybridisation is a plausible explanation but evidence for the likely parents involved in such an event is inconclusive.     

The evolution of social learning rules: Payoff-biased and frequency-dependent biased transmission

Humans and other animals do not use social learning indiscriminately, rather, natural selection has favoured the evolution of social learning rules that make selective use of social learning to acquire relevant information in a changing environment. We present a gene-culture coevolutionary analysis of a small selection of such rules (unbiased social learning, payoff-biased social learning and frequency-dependent biased social learning, including conformism and anti-conformism) in a population of asocial learners where the environment is subject to a constant probability of change to a novel state. We define conditions under which each rule evolves to a genetically polymorphic equilibrium. We find that payoff-biased social learning may evolve under high levels of environmental variation if the fitness benefit associated with the acquired behaviour is either high or low but not of intermediate value. In contrast, both conformist and anti-conformist biases can become fixed when environment variation is low, whereupon the mean fitness in the population is higher than for a population of asocial learners. Our examination of the population dynamics reveals stable limit cycles under conformist and anti-conformist biases and some highly complex dynamics including chaos. Anti-conformists can out-compete conformists when conditions favour a low equilibrium frequency of the learned behaviour. We conclude that evolution, punctuated by the repeated successful invasion of different social learning rules, should continuously favour a reduction in the equilibrium frequency of asocial learning, and propose that, among competing social learning rules, the dominant rule will be the one that can persist with the lowest frequency of asocial learning.     

Phylogeny of cardinalfishes (Teleostei: Gobiiformes: Apogonidae) and the evolution of visceral bioluminescence

The cardinalfishes (Apogonidae) are a diverse clade of small, mostly reef-dwelling fishes, for which a variety of morphological data have not yielded a consistent phylogeny. We use DNA sequence to hypothesize phylogenetic relationships within Apogonidae and among apogonids and other acanthomorph families, to examine patterns of evolution including the distribution of a visceral bioluminescence system. In conformance with previous studies, Apogonidae is placed in a clade with Pempheridae, Kurtidae, Leiognathidae, and Gobioidei. The apogonid genus Pseudamia is recovered outside the remainder of the family, not as sister to the superficially similar genus Gymnapogon. Species sampled from the Caribbean and Western Atlantic (Phaeoptyx, Astrapogon, and some Apogon species) form a clade, as do the larger-bodied Glossamia and Cheilodipterus. Incidence of visceral bioluminescence is found scattered throughout the phylogeny, independently for each group in which it is present. Examination of the fine structure of the visceral bioluminescence system through histology shows that light organs exhibit a range of morphologies, with some composed of complex masses of tubules (Siphamia, Pempheris, Parapriacanthus) and others lacking tubules but containing chambers formed by folds of the visceral epithelium (Acropoma, Archamia, Jaydia, and Rhabdamia). Light organs in Siphamia, Acropoma, Pempheris and Parapriacanthus are distinct from but connected to the gut; those in Archamia, Jaydia, and Rhabdamia are simply portions of the intestinal tract, and are little differentiated from the surrounding tissues. The presence or absence of symbiotic luminescent bacteria does not correlate with light organ structure; the tubular light organs of Siphamia and chambered tubes of Acropoma house bacteria, those in Pempheridae and the other Apogonidae do not.     

Phylogenetics of Quiinaceae (Malpighiales): evidence from trnL-trnF sequence data and morphology

We present the first parsimony analyses of the Neotropical family Quiinaceae using nucleotide sequence data from the non-coding trnL intron and trnL-trnF intergenic spacer of the plastid genome, analysed separately as well as in combination with morphology. Both molecules and combined data recover Quiinaceae as a well-supported monophyletic group. Quiinaceae form a polytomy together with their potential sister groups, the monophyletic Ochnaceae s.str. and the monotypic Medusagynaceae from the Seychelles in the Indian Ocean. Froesia is resolved as sister to the rest of the family. Other members of the family, Lacunaria, Quiina, and Touroulia, are all recovered as monophyletic despite the inclusion of strikingly distinctive representatives (L. oppositifolia and Q. pteridophylla). Relationships among the last three genera, however, are yet uncertain. Optimising characters of breeding system onto the molecular phylogeny reveals that bisexual flowers (Froesia) are the ancestral state in Quiinaceae, whereas androdioecy (Quiina, Touroulia) and dioecy (Lacunaria) are derived breeding systems.     

Paraphyly of Cyrtomium (Dryopteridaceae): evidence from rbcL and trnL-F sequence data

Cyrtomium is an Asiatic genus characterized by anastomosing veins with included veinlets, and comprises about 40 species. We sequenced rbcL and trnL-F sequences of 19 species of Cyrtomium and eight species from related genera in order to elucidate a molecular phylogeny of the genus using maximum-parsimony methods. The phylogenetic trees did not agree with traditional classifications. Cyrtomium was resolved as paraphyletic, and a clade including subseries Balansana of Cyrtomium, Cyrtogonellum, Polystichum subacutidens and Cyrtomidictyum (the BCPC clade) and a second one containing Cyrtomium sensu stricto were monophyletic. The results also implied that: (1) C. uniseriale was synonymous with C. balansae; (2) C. falcatum was likely the female parent of C. devexiscapulae; and (3) based on the rbcL and trnL-F sequence data, C. nephrolepioides and C. grossum were the female parents of C. shingianum and C. chingianum, respectively, although other evidence is needed for the confirmation of this hypothesis.     

Reconstructing the evolution of agarics from nuclear gene sequences and basidiospore ultrastructure

Traditional classifications of agaric fungi involve gross morphology of their fruit bodies and meiospore print-colour. However, the phylogeny of these fungi and the evolution of their morphological and ecological traits are poorly understood. Phylogenetic analyses have already demonstrated that characters used in traditional classifications of basidiomycetes may be heavily affected by homoplasy, and that non-gilled taxa evolved within the agarics several times. By integrating molecular phylogenetic analyses including domains D1–D3 and D7–D8 of nucLSU rDNA and domains A–C of the RPB1 gene with morphological and chemical data from representative species of 88 genera, we were able to resolve higher groups of agarics. We found that the species with thick-walled and pigmented basidiospores constitute a derived group, and hypothesize that this specific combination of characters represents an evolutionary advantage by increasing the tolerance of the basidiospores to dehydration and solar radiation and so opened up new ecological niches, e.g. the colonization of dung substrates by enabling basidiospores to survive gut passages through herbivores. Our results confirm the validity of basidiospore morphology as a phylogenetic marker in the agarics.     

The Belohdelie frontal: new evidence of early hominid cranial morphology from the Afar of Ethiopia

Study of the Belohdelie frontal has demonstrated that this four-million-year-old specimen belongs to a very generalized hominid that may be close to the divergence point of the hominid and African ape clades. Features associated with the temporalis muscle in the Belohdelie frontal and other new hominids from Hadar (AL 333-125) and West Turkana (KNM-ER 17000) suggest that the earliest hominids shared a large anterior component of this muscle relative to the extinct and extant apes. Results of this study support the phylogenetic hypothesis put forward by many workers that A. afarensis gave rise to the “robust” Australopithecus and A. africanus clades.     

Sheep grazing and rodent populations: evidence of negative interactions from a landscape scale experiment

Inter-specific competition, facilitation and predation influence herbivore assemblages, but no study has experimentally explored the interactions between large ungulates and small rodents. In a fully replicated, landscape scale experiment, we manipulated densities of domestic sheep in mountain pastures in Norway. We then determined population growth and densities of rodents by live trapping in each of the areas with different sheep densities. We found that the (summer) population growth rate and autumn density of the field vole (Microtus agrestis) was lower at high sheep density. This provides the first experimental evidence of negative interactions between an ungulate and small rodent species. There was no effect on the bank vole (Clethrionomys glareolus), whose diet differs from sheep. Sheep density, therefore, potentially alters the pattern of inter-specific population synchrony amongst voles. Our study shows that negative interactions between large ungulates and small rodents may be species-specific and negative population consequences for the rodent population appear above threshold ungulate densities.Electronic supplementary material is available for this article at     

Evolution of the monocot gynoecium: evidence from comparative morphology and development in Tofieldia, Japonolirion, Petrosavia and Narthecium

We present new comparative morphological and developmental data on gynoecia of three genera of early-divergent monocots: Tofieldia (Tofieldiaceae, Alismatales), Petrosavia and Japonolirion (Petrosaviaceae, Petrosaviales) and one lilioid monocot: Narthecium (Nartheciaceae, Dioscoreales). Our data show significant differences between the genera examined, and are congruent with the splitting of former Nartheciaceae sensu Tamura (1998) into families Tofieldiaceae, Petrosaviaceae NB-cosistent with later and Nartheciacae (APG II 2003). Our investigation confirms the presence of at least partial carpel fusion in all taxa examined. Previous data indicating apocarpy in Japonolirion, some Petrosavia and Tofieldia could be due to late postgenital carpel fusion in these plants. Syncarpy also characterises other early-divergent monocot lineages such as Acoraceae and Araceae. It is most parsimonious to regard syncarpy as a primitive condition for monocots, but an alternative scenario suggests that apocarpy is plesiomorphic among monocots, involving multiple origins of syncarpy. The latter hypothesis is supported by significant differences between gynoecia of early-divergent monocots, including different modes of carpel fusion.     

The comparative amino acid sequences, substrate specificities and gene or cDNA nucleotide sequences of some prokaryote and eukaryote amidinotransferases: implications for evolution

The amino acid sequences of the amidinotransferases and the nucleotide sequences of their genes or cDNA from four Streptomyces species (seven genes) and from the kidneys of rat, pig, human and human pancreas were compared. The overall amino acid and nucleotide sequences of the prokaryotes and eukaryotes were very similar and further, three regions were identified that were highly identical. Evidence is presented that there is virtually zero chance that the overall and high identity regions of the amino acid sequence similarities and the overall nucleotide sequence similarities between Streptomyces and mammals represent random match. Both rat and lamprey amidinotransferases were able to use inosamine phosphate, the amidine group acceptor of Streptomyces. We have concluded that the structure and function of the amidinotransferases and their genes has been highly conserved through evolution from prokaryotes to eukaryotes. The evolution has occurred with: (1) a high degree of retention of nucleotide and amino acid sequences; (2) a high degree of retention of the primitive Streptomyces guanine+cytosine (G+C) third codon position composition in certain high identity regions of the eukaryote cDNA; (3) a decrease in the specificities for the amidine group acceptors; and (4) most of the mutations silent in the regions suggested to code for active sites in the enzymes.     

The view from the Lincoln Cave: mid- to late Pleistocene fossil deposits from Sterkfontein hominid site, South Africa

The Lincoln-Fault cave system lies adjacent to the Sterkfontein Cave system in the Cradle of Humankind World Heritage Site, Gauteng Province, South Africa. Lincoln Cave contains a mid- to late Pleistocene fossiliferous deposit which has been dated using uranium series methods to between 252,600+/-35,600 and 115,300+/-7,700 years old. Although speleologists presumed that there was no connection between the Lincoln Cave and Sterkfontein Cave systems, results of excavations conducted in 1997 suggest a link between the deposits. Detailed comparisons of artifacts, fauna, hominid material, and a statistical correspondence analysis (CA) of the macromammalian fauna in the deposits strongly support this hypothesis. The recovery of Early Acheulean-type artifacts from the Lincoln Cave suggests that older artifacts eroded out of Sterkfontein Member 5 West and were redeposited into the younger Lincoln Cave deposits. The close physical proximity of these deposits, and the nature of the material recovered from them, indicates that the material was probably redeposited via a link between the two cave systems. Although faunal mixing is present, it is possible to say that large carnivorans become more scarce at Sterkfontein during the mid- to late Pleistocene, while small canids and felids appear to become more abundant, indicating that large and small carnivorans probably varied their use of the site through time. This may also reflect an increasing presence of humans in the Sterkfontein area during the mid- to late Pleistocene.     

走出青藏高原：拉格啤酒酵母的起源与演化

采用低温底层发酵的拉格(lager)啤酒15世纪开始在德国巴伐利亚地区出现,19世纪初流行至全世界,目前已成为全球产量最高的酒精饮料。目前已阐明,拉格啤酒发酵酵母为巴斯德酿酒酵母(Saccharomyces pastorianus),该种是一个杂交种,由艾尔(ale)啤酒酵母(Saccharomyces cerevisiae)与野生真贝氏酿酒酵母(Saccharomyces eubayanus)杂交而成,后者赋予了拉格啤酒酵母的耐低温能力。近年的群体遗传学和群体基因组学研究表明,拉格啤酒酵母的野生亲本S.eubayanus起源于青藏高原,可能通过丝绸之路传播到了欧洲。比较基因组学研究表明,拉格啤酒酵母包含2个株系,即Ⅰ系/Saaz系和Ⅱ系/Frohberg系,早期分别流行于中欧和西欧地区。前者为近似异源3倍体,后者为近似异源4倍体。2个株系在耐低温、麦芽三糖利用和风味物质产生能力等方面具有明显差异。在中国普通微生物菌种保藏管理中心(China General Microbiological Culture Collection Center,CGMCC)保藏的S.pastorianus...     

The potential role of phoresy in the evolution of parasitism: radiolabelling (tritium) evidence from an astigmatid mite

Using tritium as a radiolabel marker of interspecific fluid transfer, we present experimental evidence that the heteromorphic deutonymph of an astigmatid mite (Hemisarcoptes cooremani) acquires materials (at least water) directly from the haemolymph of its beetle host (Chilocorus cacti). This acquisition is above that obtained from atmospheric vapour. The material acquired from the host is necessary for the completion of the ontogeny of H. cooremani and is likely procured through the action of the caudal ventral suckers of the heteromorphic deutonymph (hypopus). On gross morphological criteria, this mite-beetle relationship was previously defined as phoretic (for dispersal). Scanning electron photomicrographs of the physical relationship between the hypopodes and the heetles shed light on the parasitic nature of the hypopus of H. cooremani. Our findings are discussed in terms of the evolution of parasitism from a free-living astigmatid form. This transition into parasitism is facilitated by the heteromorphic hypopus and represents a classic wolf-insheep's-clothing strategy. The heteromorph retains the characteristic phoretic morphology while exploiting the host in transit.     

The Oldowan site of Muhkai II,layer 80 (northeastern Caucasus): Spatial structure and cultural and chronological attribution of the lithic assemblage

In 2004–2006 a group of Lower Palaeolithic sites was discovered in the northeastern Caucasus: Ainikab I–VI, Gegalashur I–III and Muhkai I–II. Since then, they have been the subject of comprehensive scientific investigations. One site which is undergoing active research is the multilayered site of Muhkai II. Multiple cultural layers at the site have been found in a 73 m thick sequence of Early Pleistocene sediments. The geological age of the layers encompasses the interval 2.1–0.8 million years ago, or the majority of the Early Pleistocene. Layer 80 of Muhkai II is located in the central part of the section at a depth of −33.6 to −34.0 m. Its significance lies in the fact that the site contains two cultural layers–the upper and the lower (main)–that are preserved in situ or have been subject to minimal fluvial processes. The finds consist of lithic artefacts and osseous faunal remains. According to field observations and microstratigraphic analyses, the cultural layers can be characterised as the ancient surfaces of an occupation area. Two stages of occupation can be defined in the lower cultural layer. Layer 80 of Muhkai II was a periodically visited location at the banks of a waterbody, where the acquisition and butchery of large mammals took place. The faunal collection contains 301 bones, deriving from four carnivorous and six herbivorous species of mammals. The total lithic collection contains 1094 finds. According to typological and technological criteria the lithic assemblage relates to the Oldowan and has analogies with Oldowan sites in Africa (particularly with sites of the Olduvai Gorge as well as others). At the same time, some specifics of the lithic assemblage reflect the uniqueness of the site and its functional type. Layer 80 of the Muhkai II site is estimated to date to within the chronological interval ∼2.1–1.7 mya.     

A lone male chimpanzee in the wild: The survivor of a disintegrated unit-group

K Group, originally one of the two major study groups of chimpanzees since 1965 in the Mahale Mountains National Park, western Tanzania, was almost extinct by 1983: at most seven individuals remained in the group at the beginning of 1983. K Group continued to exist for more than four years, but in 1987 a male was left alone at the age of 15 after all the other chimpanzees of the group emigrated or disappeared. Since then he has been observed sporadically for more than five years only within the former range of K Group, without having any contact with the many resident chimpanzees of the neighboring M Group, the other major study group. The present observations reconfirm the strong philopatric tendency of adult male chimpanzees.