New species and new combinations in Briquetia and Hochreutinera,and a discussion of the Briquetia generic alliance (Malvaceae)

Two new species ofBriquetia,B. sonorae andB. inermis, are described from northern Mexico, and another species that ranges from Mexico to Bolivia is transferred into the genus asB. spicata. The genus (previously known as monotypic, Paraguayan-Brazilian) is thereby enlarged from one species to four, and its geographical and morphological limits are greatly expanded. Also, a Mexican species ofAbutilon is transferred toHochreutinera, asH. amplexifolia, enlarging that genus from one to two species. On the basis of this new information, the limits of the informalBriquetia alliance are reconsidered; it is considered to include onlyBriquetia, Dirhamphis, andBatesimalva.     

Multiple loss-of-function 5-O-glucosyltransferase alleles revealed in Vitis vinifera,but not in other Vitis species

Key message

Wild and loss-of-function alleles of the 5 - O - glucosyltransferase gene responsible for synthesis of diglucoside anthocyanins in Vitis were characterized. The information aids marker development for tracking this gene in grape breeding.

Abstract

Anthocyanins in red grapes are present in two glycosylation states: monoglucoside (3-O-glucoside) and diglucoside (3, 5-di-O-glucoside). While monoglucoside anthocyanins are present in all pigmented grapes, diglucoside anthocyanins are rarely found in the cultivated grape species Vitis vinifera. Biochemically 3-O-glucoside anthocyanins can be converted into 3,5-di-O-glucoside anthocyanins by a 5-O-glucosyltransferase. In this study, we surveyed allelic variation of the 5-O-glucosyltransferase gene (5GT) in 70 V. vinifera ssp. vinifera cultivars, 52 V. vinifera ssp. sylvestris accessions, 23 Vitis hybrid grapes, and 22 accessions of seven other Vitis species. Eighteen 5GT alleles with apparent loss-of-function mutations, including seven premature stop codon mutations and six frameshift indel mutations, were discovered in V. vinifera, but not in the other Vitis species. A total of 36 5GT alleles without apparent loss-of-function mutations (W-type) were identified. These W-type alleles were predominantly present in wild Vitis species, although a few of them were also found in some V. vinifera accessions. We further evaluated some of these 5GT alleles in producing diglucoside anthocyanins by analyzing the content of diglucoside anthocyanins in a set of representative V. vinifera cultivars. Through haplotype network analysis we revealed that V. vinifera ssp. vinifera and its wild progenitor V. vinifera ssp. sylvestris shared many loss-of-function 5GT alleles and extensive divergence of the 5GT alleles was evident within V. vinifera. This work advances our understanding of the genetic diversity of 5GT and provides a molecular basis for future marker-assisted selection for improving this important wine quality trait.     

The subdivisions of Magnistipula Engl. (Chrysobalanaceae)

A conspectus of the subgenera and sections ofMagnistipula is provided. Of the two subgenera occurring on the African mainland, subgenusMagnistipula is divided into the sectionsMagnistipula,Animalculum andPeregrinator, whereas subgen.Pellegriniella is monotypic. A Malagasy subgenus,Tolmiella, is new; its two species,M. cerebriformis andM. tamenaka, are transferred fromHirtella.     

Isolation and characterization of rat intestinal bacteria involved in biotransformation of (−)-epigallocatechin

Two intestinal bacterial strains MT4s-5 and MT42 involved in the degradation of (?)-epigallocatechin (EGC) were isolated from rat feces. Strain MT4s-5 was tentatively identified as Adlercreutzia equolifaciens. This strain converted EGC into not only 1-(3, 4, 5-trihydroxyphenyl)-3-(2, 4, 6-trihydroxyphenyl)propan-2-ol (1), but also 1-(3, 5-dihydroxyphenyl)-3-(2, 4, 6-trihydroxyphenyl)propan-2-ol (2), and 4′-dehydroxylated EGC (7). Type strain (JCM 9979) of Eggerthella lenta was also found to convert EGC into 1. Strain MT42 was identified as Flavonifractor plautii and converted 1 into 4-hydroxy-5-(3, 4, 5-trihydroxyphenyl)valeric acid (3) and 5-(3, 4, 5-trihydroxyphenyl)-γ-valerolactone (4) simultaneously. Strain MT42 also converted 2 into 4-hydroxy-5-(3, 5-dihydroxyphenyl)valeric acid (5), and 5-(3, 5-dihydroxyphenyl)-γ-valerolactone (6). Furthermore, F. plautii strains ATCC 29863 and ATCC 49531 were found to catalyze the same reactions as strain MT42. Interestingly, formation of 2 from EGC by strain MT4s-5 occurred rapidly in the presence of hydrogen supplied by syntrophic bacteria. Strain JCM 9979 also formed 2 in the presence of the hydrogen or formate. Strain MT4s-5 converted 1, 3, and 4 to 2, 5, and 6, respectively, and the conversion was stimulated by hydrogen, whereas strain JCM 9979 could catalyze the conversion only in the presence of hydrogen or formate. On the basis of the above results together with previous reports, the principal metabolic pathway of EGC and EGCg by catechin-degrading bacteria in gut tract is proposed.     

The classification of the generic segregates of Phrygilanthus (= Notanthera) of the Loranthaceae

The taxonomic composition ofPhrygilanthus has long been a source of confusion. Until recently the genus was considered to be distributed from Mexico, Central and South America, to Australia, New Guinea, and the Philippines. Analyses of floral morphology, inflorescence structure, life form, fruit type, and especially chromosome numbers indicate thatPhrygilanthus, as classically circumscribed, is a highly heterogeneous and artificial assemblage containing elements now referable to the following ten genera:Cecarria, Desmaria, Gaiadendron, Ligaria, Muellerina, Notanthera, Psittacanthus, Struthanthus, Tripodanthus, andTristerix. Phrygilanthus itself is nomenclaturally illegitimate and must be replaced by Notanthera. A synopsis of the genera segregated from thePhrygilanthus group is included. A key to the New World genera of Loranthaceae is also appended as well as a nomenclator indicating the present generic status of taxa at one time or another assigned toPhrygilanthus. One genus,Cecarria, is described as new; five new combinations are made:Cecarria obtusifolia (Merr.) Barlow,Psittacanthus palmeri (Wats.) Barlow & Wiens,Struthanthus panamensis (Rizzini) Barlow & Wiens,Tristerix aphyllus (DC.) Barlow & Wiens, andTristerix grandiflorus (Ruiz & Pavon) Barlow & Wiens.     

A taximetric study of infraspecific variation in autogamous Limnanthes floccosa (Limnanthaceae)

Limnanthes floccosa Howell is a variable autogamous species of recent origin. The phenetic relationships of a large number of populations ofL. floccosa were studied using taximetric techniques. Five subspecies are recognized inL. floccosa on the basis of the taximetric results.Limnanthes floccosa ssp.californica andL. floccosa ssp.grandiflora are described as new, andL. floccosa ssp.pumila andL. floccosa ssp.bellingeriana are proposed as new combinations. Aspects of autogamy responsible for the highly discrete pattern of variation inL. floccosa are discussed.     

An extensive analysis of the African rice genetic diversity through a global genotyping

Key message

We present here the first curated collection of wild and cultivated African rice species. For that, we designed specific SNPs and were able to structure these very low diverse species.

Abstract

Oryza glaberrima, the cultivated African rice, is endemic from Africa. This species and its direct ancestor, O. barthii, are valuable tool for improvement of Asian rice O. sativa in terms of abiotic and biotic stress resistance. However, only a few limited studies about the genetic diversity of these species were performed. In the present paper, and for the first time at such extend, we genotyped 279 O. glaberrima, selected both for their impact in current breeding and for their geographical distribution, and 101 O. barthii, chosen based on their geographic origin, using a set of 235 SNPs specifically designed for African rice diversity. Using those data, we were able to structure the individuals from our sample in three populations for O. barthii, related to geography, and two populations in O. glaberrima; these two last populations cannot be linked however to any currently phenotyped trait. Moreover, we were also able to identify misclassification in O. glaberrima as well as in O. barthii and identified new form of O. sativa from the set of African varieties.     

A synopsis of the South American taxa of Fabronia (Fabroniaceae)

The genusFabronia in South America is found to represent five taxa:F. ciliaris var.ciliaris, F. ciliaris var.wrightii,F. ciliaris var.polycarpa,F. macroblepharis andF. jamesonii. Synonymy, brief discussion, illustrations and a key are provided.Fabronia enervis Herz., hom. illeg., is the basis for the new genusMahua.     

New and noteworthy plants from Great Barrier Reef sand cays,Australia

Observations are presented on new and critical plants from the northern sand cays on the Great Barrier Reef, Queensland, Australia, based mainly on recent collections made by David R. Stoddart and Ralf Buckley. New species and varieties are described:Lepturus stoddartii (Poaceae),Boerhavia fistulosa var.fistulosa and var.puberuliflora (Nyctaginaceae),Boerhavia albiflora var.heronensis, Spermacoce everistiana (Rubiaceae), andSpermacoce buckleyi; a new combination is made:Diospyros ferrea var.compacta (R. Br.) (Ebenaceae); and additional taxonomic notes are given onBoerhavia, Euphorbia (Euphorbiaceae), andAbutilon (Malvaceae).     

Penstemon miniatus (Scrophulariaceae): New combinations

Penstemon apateticus Straw is found to be synonymous withP. miniatus Lindl.Penstemon miniatus subsp.apateticus andP. miniatus subsp.townsendianus are presented as new combinations. *** DIRECT SUPPORT *** A01CT127 00005     

Pranceacanthus coccineus (Acanthaceae), a new genus and species from Amazonian brazil

The new genusPranceacanthus, apparently most closely related to the bitypic genusJuruasia, is described and illustrated. Its sole species,P. coccineus, has been collected on “terra firma” in lowland Amazonian Brazil in the states of Amazonas and Mato Grosso and in the territory of Rondônia.     

Development of SCAR marker for sex identification in dioecious Garcinia gummi-gutta

Key message

We have developed sex-specific SCAR marker for the identification of dioecious Garcinia gummi - gutta (L.), which is useful for the selection of G. gummi - gutta at seedling stage and for plantation programmes.

Abstract

Garcinia gummi-gutta (L.) Robs. is a dioecious fruit yielding tree, which is naturally distributed as well as cultivated in the orchards in Western Ghat regions of India. A sex-linked DNA fragment was identified in Garcinia gummi-gutta (L.) Robs. by screening 150 randomly amplified polymorphic DNA primers and only one of them (OPBD20) showed different amplification band pattern associated with sex type. This sex-linked fragment was converted into male-specific sequence-characterized amplified region (SCAR) marker, CAM-566. The primers deigned in this study (OPBD20F and OPBD20R) correctly differentiated 12 male and 12 female plants at high annealing temperatures. Thus, a 556-bp band was amplified in male samples but not in female ones. Nevertheless, it should be noted that the fragments from both sexes were amplified at relatively low annealing temperatures. Additionally, the developed SCAR marker successfully identified the sexes of ten sex-unknown samples. Therefore, it can be used as an effective, convenient and reliable tool for sex determination in such dioecious species.     

A new combination in Maranthes (Chrysobalanaceae)

Maranthes, previously known in the Neotropics only from Panama, has recently been collected in Nicaragua and Costa Rica. Prior to publication of the Chrysobalanaceae of theFlora de Nicaragua, the new combinationMaranthes panamensis (Standl.) Prance & F. White is made and based onCouepia panamensis, previously considered conspecific with the AsiaticM. corymbosa Blume.     

A virus inhibitory protein isolated from Cyamopsis tetragonoloba (L.) Taub. upon induction of systemic antiviral resistance shares partial amino acid sequence homology with a lectin

Key message

Two virus inhibitory proteins were purified from Cyamopsis tetragonoloba , induced to resist virus infections by CIP-29, a systemic resistance inducing protein from Clerodendrum inerme , and characterized. One of them shared homology with a lectin.

Abstract

CIP-29, a known 29 kDa systemic antiviral resistance inducing protein isolated from Clerodendrum inerme, has been used to induce systemic resistance in Cyamopsis tetragonoloba against Sunn-hemp rosette virus (SRV). Paper reports the detection of virus inhibitory activity in induced-resistant leaf sap of C. tetragonoloba, and the purification of two virus inhibitory agents (VIAs) thereof. VIA activity was recorded as a reduction in lesion number of SRV, Tobacco mosaic virus, and Papaya ringspot virus, when they were incubated separately with resistant sap and inoculated onto susceptible C. tetragonoloba, Nicotiana tabacum cv. Xanthi-nc, and Chenopodium quinoa, respectively. The two VIAs were isolated from resistant C. tetragonoloba plant leaves using combinations of column chromatography. Both were basic proteins, and since their M _r was 32 and 62 kDa, these VIAs were called CT-VIA-32 and CT-VIA-62, respectively, on the basis of their molecular mass and the host. CT-VIA-62 displayed better activity, and was thus studied further. It tested positive for a glycoprotein, and was serologically detected only in leaf tissue post-induction. Tryptic peptides generated in-gel, post SDS-PAGE of CT-VIA-62, were sequenced through LC/MS/MS. All CT-VIA-62 peptides were found to share homologies with proteins from Medicago truncatula that possess a mannose-binding lectin domain.     

Two new taxa of Sedum section Gormania (Crassulaceae) endemic to the Trinity Mountains in California

Two taxa, narrowly endemic to the Trinity Mountains in northwestern California, are described.Sedum laxum subsp.flavidum is a tetraploid (n = 30) and is found on metabasaltic outcroppings, andSedum obtusatum subsp.paradisum is a diploid (n = 15) and occurs on granite outcroppings.     

Two new species of Disciphania (Menispermaceae: Tinosporeae) from subandean Ecuador and Peru

Described, figured, and discussed are the new speciesDisciphania dioscoreoides Barneby from Amazonian Ecuador and Peru, andD. tricaudata Barneby, sympatric with it in Ecuador. Both are referred toDisciphania sect.Taubertia (K. Schumann) Barneby.     

Biomolecules from HCN

The mechanism of the condensation of dilute aqueous solutions of HCN and the products formed by these reactions have been investigated. The initial HCN condensation reactions yield3, a compound which is readily oxidized to4. A similar oxidation of5 to6 was also observed. Urea is formed on hydrolysis of4. The oxidation-reduction products formed from HCN may be in part a consequence of the oxidation of3. It has been established by combination GC/MS that the amino acids glycine, diaminosuccinic acid, α-amino-isobutyric acid, aspartic acid, alanine and isoleucine are released on acid hydrolysis of the ‘HCN polymer’. Hydantoin (7), 5,5-dimethylhydantoin (8) and 5-carboxymethyldenehydantoin (10) are also released on acid hydrolysis of the HCN condensation products. The direct conversion of the dicarbonyl derivative, of diaminosuccinic acid to orotic acid via10 at pH 8 has been observed. This conversion suggests a direct route to pyrimidines from HCN.