Notes on some African hepatic genera 1–5

The present study deals with five genera of hepatics in Africa, Isotachis Mitt., Anastrophyllum (Spruce) Steph., Tritomaria Schiffn. ex Loeske, Gymnocoleopsis (Schust.) Schust. and Lophozia (Dum.) Dum. All African populations of the genus Isotachis Mitt. are considered to be one species, I. aubertii (Schwaegr.) Mitt. Four species of Anastrophyllum (Spruce) Steph. (s.l.), A. auritum (Lehm.) Steph., A. piligerum (Nees) Spruce, A. subcomplicatum (Lehm. et Lindenb.) Steph. and A. minutum (Schreb.) Schust., and two species of Tritomaria Schiffn. et Loeske, T. camerunensis S. Arnell and T. exsecta (Schrad.) Schiffn. ex Loeske occur in Africa. Gymmocoleopsis multiflora (Steph.) Schust. represents a genus and species hitherto unreported for the African flora. Finally, five Lophozia (Dum.) Dum. species, L. argentina (Steph.) Schust., L. capensis S. Arnell, L. decolorans (Limpr.) Steph., L. hedbergii S. Arnell and L. tristaniana (S. Arnell) Váňa, are reported from central and southern Africa; two of these (L. argentina (Steph.) Schust. and L. decolorans (Limpr.) Steph.) represent the first reports from Africa.     

The variability of critical species ofLotus L. in Iran and in the neighbouring countries II

The paper deals with some problems of distribution and variability of the speciesL. angustissimus L.,L. halophilus Boiss. etSprun.,L. laricus Rech. fil.,Aellen etEsfandiari, L.,schimperi Steud.,L. compactus Chrtková-?ertová,L. garcinii DC.     

Characterization of a recombinant l-rhamnose isomerase from Bacillus subtilis and its application on production of l-lyxose and l-mannose

The gene of an l-rhamnose isomerase (RhaA) from Bacillus subtilis was cloned to the pET28a(+) and then expressed in the E. coli ER2566. The expressed enzyme was purified with a specific activity of 3.58 U/mg by His-Trap affinity chromatography. The recombinant enzyme existed as a 194 kDa tetramer and the maximal activity was observed at pH 8.0 and 60°C. The RhaA displayed activity for l-rhamnose, l-lyxose, l-mannose, d-allose, d-gulose, d-ribose, and l-talose, among all aldopentoses and aldohexoses and it showed enzyme activity for l-form monosaccharides such as l-rhamnose, l-lyxose, l-mannose, and l-talose. The catalytic efficiency (k _cat/K _m) of the recombinant enzyme for l-rhamnose, l-lyxose, and l-mannose were 7,460, 1,013, and 258 M/sec. When l-xylulose 100 g/L and l-fructose 100 g/L were used as substrates, the optimum concentrations of RpiB were determined with 6 and 15 U/mL, respectively. The l-lyxose 40 g/L was produced from l-xylulose 100 g/L by the enzyme during 60 min, while l-mannose 25 g/L was produced from l-fructose 100 g/L for 80 min. The results suggest that RhaA from B. subtilis is a potential producer of l-form monosaccharides.     

Estimation of viscosity from passage time of liquids flowing through a microchannel array

Recently, a microchannel flow analyzer (MC-FAN) has been used to study the flow properties of blood. However, the correlation between blood passage time measured by use of the MC-FAN and hemorheology has not been clarified. In this study, a simple model is proposed for estimation of liquid viscosity from the passage time t _p of liquids. The t _p data for physiological saline were well represented by the model. According to the model, the viscosity of Newtonian fluids was estimated reasonably well from the t _p data. For blood samples, although the viscosity $ \eta_{\text{mc}} $ estimated from t _p was shown to be smaller than the viscosity $ \eta_{{450{\text{s}}^{ - 1} }} $ measured by use of a rotatory viscometer at a shear rate of 450 s^?1, $ \eta_{\text{mc}} $ was correlated with $ \eta_{{450{\text{s}}^{ - 1} }} $ . An empirical equation for estimation of $ \eta_{{450{\text{s}}^{ - 1} }} $ from $ \eta_{\text{mc}} $ of blood samples is proposed.     

Pareto genealogies arising from a Poisson branching evolution model with selection

We study a class of coalescents derived from a sampling procedure out of $N$ i.i.d. Pareto $\left( \alpha \right) $ random variables, normalized by their sum, including $\beta $ –size-biasing on total length effects ( $\beta <\alpha $ ). Depending on the range of $\alpha ,$ we derive the large $N$ limit coalescents structure, leading either to a discrete-time Poisson-Dirichlet $ \left(\alpha ,-\beta \right) \Xi -$ coalescent ( $\alpha \in \left[ 0,1\right) $ ), or to a family of continuous-time Beta $\left( 2-\alpha ,\alpha -\beta \right) \Lambda -$ coalescents ( $\alpha \in \left[ 1,2\right) $ ), or to the Kingman coalescent ( $\alpha \ge 2$ ). We indicate that this class of coalescent processes (and their scaling limits) may be viewed as the genealogical processes of some forward in time evolving branching population models including selection effects. In such constant-size population models, the reproduction step, which is based on a fitness-dependent Poisson Point Process with scaling power-law $\left( \alpha \right) $ intensity, is coupled to a selection step consisting of sorting out the $N$ fittest individuals issued from the reproduction step.     

d-Amino Acid-Induced Expression of d-Amino Acid Oxidase in the Yeast Schizosaccharomyces pombe

We investigated d-amino acid oxidase (DAO) induction in the popular model yeast Schizosaccharomyces pombe. The product of the putative DAO gene of the yeast expressed in E.?coli displayed oxidase activity to neutral and basic d-amino acids, but not to an l-amino acid or acidic d-amino acids, showing that the putative DAO gene encodes catalytically active DAO. DAO activity was weakly detected in yeast cells grown on a culture medium without d-amino acid, and was approximately doubled by adding d-alanine. The elimination of ammonium chloride from culture medium induced activity by up to eight-fold. l-Alanine also induced the activity, but only by about half of that induced by d-alanine. The induction by d-alanine reached a maximum level at 2?h cultivation; it remained roughly constant until cell growth reached a stationary phase. The best inducer was d-alanine, followed by d-proline and then d-serine. Not effective were N-carbamoyl-d,l-alanine (a better inducer of DAO than d-alanine in the yeast Trigonopsis variabilis), and both basic and acidic d-amino acids. These results showed that S. pombe DAO could be a suitable model for analyzing the regulation of DAO expression in eukaryotic organisms.     

Quorum-sensing inhibitory compounds from extremophilic microorganisms isolated from a hypersaline cyanobacterial mat

In this study, extremely halophilic and moderately thermophilic microorganisms from a hypersaline microbial mat were screened for their ability to produce antibacterial, antidiatom, antialgal, and quorum-sensing (QS) inhibitory compounds. Five bacterial strains belonging to the genera Marinobacter and Halomonas and one archaeal strain belonging to the genus Haloterrigena were isolated from a microbial mat. The strains were able to grow at a maximum salinity of 22–25 % and a maximum temperature of 45–60 °C. Hexanes, dichloromethane, and butanol extracts from the strains inhibited the growth of at least one out of nine human pathogens. Only butanol extracts of supernatants of Halomonas sp. SK-1 inhibited growth of the microalga Dunaliella salina. Most extracts from isolates inhibited QS of the acyl homoserine lactone producer and reporter Chromobacterium violaceum CV017. Purification of QS inhibitory dichloromethane extracts of Marinobacter sp. SK-3 resulted in isolation of four related diketopiperazines (DKPs): cyclo(l-Pro-l-Phe), cyclo(l-Pro-l-Leu), cyclo(l-Pro-l-isoLeu), and cyclo(l-Pro-d-Phe). QS inhibitory properties of these DKPs were tested using C. violaceum CV017 and Escherichia coli-based QS reporters (pSB401 and pSB1075) deficient in AHL production. Cyclo(l-Pro-l-Phe) and cyclo(l-Pro-l-isoLeu) inhibited QS-dependent production of violacein by C. violaceum CV017. Cyclo(l-Pro-l-Phe), cyclo(l-Pro-l-Leu), and cyclo(l-Pro-l-isoLeu) reduced QS-dependent luminescence of the reporter E. coli pSB401 induced by 3-oxo-C6-HSL. Our study demonstrated the ability of halophilic and moderately thermophilic strains from a hypersaline microbial mat to produce biotechnologically relevant compounds that could be used as antifouling agents.     

Chromosome counts and chromosome morphology of some selected species

In the years 1976–1981 we studied chromosome counts and karyotypic formulae of the following 29 species of plants from 41 localities (of these 6 from Bohemia, 32 from Moravia, 3 from Slovakia):Batrachium baudotii (Godron) F. W. Schultz,Chenopodium rubrum L.,C. polyspermum L.,C. murale L.,C. ficifolium Sm.,C. opulifolium Schrader ex DC. inLam. et DC.,C. strictum Roth [subsp.strictum, subsp.glaucophyllum (Aellen)Aellen inJust etAellen, subsp.striatiforme Uotila],Arenaria grandiflora L.,Illecebrum verticillatum L.,Spergula morisonii Boreau inDuchartre,Spergularia marginata (DC. inLam. et DC.)Kittel S. marina (L.)Griseb.,S. rubra (L.) J. etC. Presl,Silene conica L.,Sisymbrium loeselii L.,S. volgense Bieb. exE. Fourn.,S. orientale L. [subsp. orientale, subsp.macroloma (A. Pomel)Dvo?ák],S. officinale (L.)Scop.,Descurainia sophia (L.)Webb exPrantl inEngler etPrantl,Nasturtium officinale R. Br. inAiton,Barbarea arcuata (Opiz inPresl J. et C.)Reichenb.,Lunaria annua L.,Soldanella montana Willd.,S. carpatica Vierh. inUrban etGraebner,Lotus tenuis Waldst. etKit. exWilld.,L. uliginosus Schkuhr,Trigonella monspeliaca L.,Geranium sibiricum L.,Lactuca tatarica (L.)C. A. Meyer.     

Ein Beitrag zur Nomenklatur sphinctozoider Schwämme (Porifera)

The sphinctozoid sponge generaFania Senowbari-Daryan 1990 andSpica Termier &Termier 1977 are preoccupied.Fania is replaced byFanthalamia nom. nov. andSpica by the younger synonymFistulispongia Termier &Termier 1977. The invalid subfamily name FaniinaeSenowbari-Daryan 1990 is replaced by Fanthalamiinae n. subfam. The invalid family and subfamily names SpicidaeTermier &Termier 1977 and SpicinaeSenowbari-Daryan 1990 respectively are replaced by FistulispongiidaeTermier atTermier 1977 and FistulispongiinaeSenowbari-Daryan 1990. The generaWaagenium de Laubenfels 1957 andCatubria Merla 1931 were previously overlooked.Waagenium DeLaubenfels 1957 is a younger synonym ofColospongia Laube 1865. The position ofCatubria Merla 1931 is uncertain. Most probablyCatubria is an alga.     

New chromosome numbers inTaraxacum with reference to SAT-chromosomes

Chromosome numbers of eight agamospermousTaraxacum microspecies are reported for the first time:T hypanicum Tzvel. [sect.Dioszegia (Heuff.) Heuff.,T. neosivaschicum Tzvel. [sect.Palustria (Lindb, fil.)Dahlst.],T. pseudohoppeanum Kirschner et?těpánek (sect.Erythrocarpa Dahlst.),T. schroeterianum H.-M. (sect.Rhodocarpa Van Soest),T. marmottae C.E. Sonck,T. lambinonii Van Soest [sect.Erythrosperma (Lindb. fil.)Dahlst.],T. zermattense Dahlst, andT. magnoobliquum Van Soest (taxa of uncertain classification). All these polyploid microspecies have satellite chromosomes in their karyotypes. Advanced karyological characters were found in sect.Dioszegia, hitherto regarded as a primitive section ofTaraxacum: triploidy in agamospermousT. hypanicum Tzvel. and satellite chromosomes as in this taxon, as in two diploid sexualsT. serotinum (W. et K.)Poiret andT. haussknechtii Uechtr. The results presented are compared to the literature data.     

Scanning electron microscopic study of anamorphs of someBasidiomycetes in culture

The anamorphs in cultures ofLepista nuda (Bull.:Fr.)Cooke,Coprinus comatus (Müll.:Fr.)S.F. Gray,Fistulina hepatica Sohaeff.:Fr.,Pholiota adiposa (Fr.)Kumm. andAsterophora lycoperdoides (Bull.)S.F. Gray, an imperfect state ofNyctalis lycoperdoides (Bull.)Schroet., were studied by scanning electron microscopy. Arthroconidia were described inLepista nuda for the first time. Examination of the fine structure of dendroid forms inCoprinus comatus revealed why those structures were not propagative.     

Lower Cambrian tubular micro-to macrofossils from the Paseky Shale of the Barrandian area (Czech Republic)

The carbonaceous megafossil (mega-alga)Marpolia spissa Walcott 1919 is described from the Early Cambrian of the Barrandian area for the first time. Macroscopic remains of colonies ofM. spissa are compared with tubular microfossils of the same rocks. Different areas in colonies ofM. spissa are assignable to several (part-based) genera and species of microfossils. Therefore, the microfossil taxaSiphonophycus robustum (Schopf 1968)Knoll et al. 1991,S. typicum (Hermann 1974)Butterfield 1994,S. kestron Schopf 1968,S. capitaneum Nyberg &Schopf 1984,Polytrichoides lineatus Hermann 1974, emend.Knoll et al. 1991,Tortunema angusta (Kolosov 1984)Butterfield 1994 andTortunema wernadskii (Schepeleva 1960)Butterfield 1994 should only be used as form-species in the sense of an artificial taxonomy. The palaeoenvironment of the Paseky Shale and the biological assignment ofMarpolia spissa are discussed.     

Notes on the genusOenothera subsect.Oenothera (Onagraceae) in the Czech Republic

Up-to-date results of taxonomic and phytogeographic studies ofOenothera subsect.Oenothera in the eastern part of the Czech Republic (Moravia and Silesia) are presented. A new hybridogenous species,Oe. moravica Jehlík etRostański (=Oe. fallax × Oe. victorini), is described from S Moravia. Several taxa and hybrids are reported for the first time for the Czech Republic:Oe. victorini Gates etCatcheside (=Oe. rostanskii Jehlík),Oe. × wienii Renner exRostański,Oe. acutifolia × Oe. victorini. Other taxa are recorded from the eastern part of the Czech Republic for the first time:Oe. acutifolia Rostański,Oe. hoelscheri Renner exRostański,Oe. parviflora L.,Oe. subterminalis Gates. The taxonomy ofOe. pycnocarpa Atkinson etBartlett is discussed. A survey of species and hybrids ofOenothera subsect.Oenothera in the Czech Republic is added.     

Studien über dieJungermannioideae (Hepaticae) 6.Jungermannia Subg.Solenostoma: Europäische und nordamerikanische Arten

Dersechste Beitrag aus der Serie der vorbereiteten Studien über die SubfamilieJungermannioideae (Jungermanniaceae, Hepaticae) enthält die taxonomische Bearbeitung des Subg.Solenostoma (Mitt.)Amak. (GattungJungermannia L. emend.Dum.) in Europa (inkl. Kaukasus und Kleinasien) und Nordamerika. Im genannten Gebiet kommen 10 Arten vor, u. zw.J. caespiticia Lindenb.,J. caucasica Váňa,J. confertissima Nees,J. gracillima Sm.,J. handelii (Schiffn.)Amak.,J. jenseniana Grolle,J. lignicola (Schiffn.)Grolle,J. pyriflora Steph.,J. rubra Gott. exUnd. undJ. sphaerocarpa Hook. Die ArtJ. confertissima Nees (bisher alsSolenostoma levieri (Steph.)Steph. bezeichnet) gehört zu der SektionDesmorhiza Amak., alle anderen Arten gehören zu der SektionSolenostoma.     

Reconstructing a Phylogenetic Level-1 Network from Quartets

We describe a method that will reconstruct an unrooted binary phylogenetic level-1 network on \(n\) taxa from the set of all quartets containing a certain fixed taxon, in \(O(n^3)\) time. We also present a more general method which can handle more diverse quartet data, but which takes \(O(n^6)\) time. Both methods proceed by solving a certain system of linear equations over the two-element field \(\mathrm{GF}(2)\) . For a general dense quartet set, i.e. a set containing at least one quartet on every four taxa, our \(O(n^6)\) algorithm constructs a phylogenetic level-1 network consistent with the quartet set if such a network exists and returns an \(O(n^2)\) -sized certificate of inconsistency otherwise. This answers a question raised by Gambette, Berry and Paul regarding the complexity of reconstructing a level-1 network from a dense quartet set, and more particularly regarding the complexity of constructing a cyclic ordering of taxa consistent with a dense quartet set.     

Vaccination Strategies for SIR Vector-Transmitted Diseases

Vector-borne diseases are one of the major public health problems in the world with the fastest spreading rate. Control measures have been focused on vector control, with poor results in most cases. Vaccines should help to reduce the diseases incidence, but vaccination strategies should also be defined. In this work, we propose a vector-transmitted SIR disease model with age-structured population subject to a vaccination program. We find an expression for the age-dependent basic reproductive number \(R_0\) , and we show that the disease-free equilibrium is locally stable for \(R_0 \le 1\) , and a unique endemic equilibrium exists for \(R_0 >1\) . We apply the theoretical results to public data to evaluate vaccination strategies, immunization levels, and optimal age of vaccination for dengue disease.     

Increased Damping of Plasmon Resonances in Gold Nanoparticles Due to Broadening of the Band Structure

For the first time, systematic investigations of the damping parameter A of gold nanoparticles as a function of photon energy are presented. A is an essential parameter that quantifies the size-dependent optical properties of metal nanoparticles in the dielectric function. To determine the damping parameter, the dephasing time T ₂ of gold nanoparticles has been systematically determined under ultrahigh vacuum conditions as a function of photon energy. Dephasing times ranging from  $T_2 = 5$ fs to $T_2 = 17$ fs were measured, and subsequently, the damping parameter has been extracted. We found a strong resonance-like damping of the plasmon resonance in the vicinity of the onset of the interband transition. While the damping parameter scatters statistically around a value of  $A = 0.19$ nm/fs for photon energies below  $h\nu = 1.70$ eV, it increases rapidly to 0.32 nm/fs for  $h\nu = 1.85$ eV. For higher photon energies, A decreases steadily to $A = 0.24$ nm/fs at $h\nu = 2.15$ eV. A comparison to former measurements as well as to theoretical predictions reveals surface scattering and a discretizing and broadening of the band structure that influences the interband transition as the most dominant size-dependent damping mechanisms. The latter, i.e., a damping via increased interband transitions, assumes a coherent damping process of the oscillating electrons and, as a consequence, the plasmon is treated as a two-level system. Thus, the results deliver new physical insight to the fundamental understanding of surface plasmons.