Fishery of the Deep-water Rose Shrimp Parapenaeus longirostris (Lucas, 1846) (Crustacea: Decapoda) in the Northern Tyrrhenian Sea (Western Mediterranean)

The aim of this study is to provide information on the fishing pattern of Parapenaeus longirostris in the northern Tyrrhenian Sea (western Mediterranean), in order to improve the management of the resource in the area. Data were obtained from commercial fishery, covering the period 1991–2002. Catch rates revealed notable inter-annual fluctuation of the P. longirostris landing, probably due to the life cycle of the species. The highest yields (kg per hour of trawl) of the commercial fishery were obtained at depths ranging between 180 and 300 m, the lower ones at depths between 100 and 180 m, where small specimens are more abundant. Commercial catches were characterised by a very low presence of specimens smaller than 20 mm carapace length (CL), mainly due to the deeper localisation of the fishing grounds when compared to the recruitment areas of the species. The size at which 50% of the specimens were discarded by the fishermen was 15 mm CL, while the estimated size at first capture of the individuals caught by the commercial net was 12.4 mm CL.     

Distribution of sawfishes (Pristidae) in the Queensland Gulf of Carpentaria,Australia, with notes on sawfish ecology

Synopsis Pristis microdon, P. zijsron, P. clavata and Anoxypristis cuspidata are distributed throughout the Queensland section of the Gulf of Carpentaria, Australia. In a survey of the four species, Anoxypristis cuspidata was the most abundant and was recorded in both the inshore and offshore set net fisheries. The size distribution and catch locations of A. cuspidata suggest that the inshore area to a depth of 10 m may be the preferred habitat for juveniles of this species, while adults primarily occur offshore. Pristis microdon, P. zijsron and P. clavata were recorded only in the inshore fishery with catches dominated by immature animals. Pristis microdon was caught in the inshore fishery late in the monsoonal wet season (February to April) and inhabited both freshwater and estuarine environments. Pristis zijsron occurred only on the sand and mud flats outside river mouths whilst P. clavata inhabited both the sand and mud flats and upstream estuarine habitats. Observations on reproductive staging and the capture of neonate specimens suggest that in all four pristids, pupping occurred through the wet season until the beginning of the dry season in May. A seasonal set net closure for the barramundi, Lates calcarifer and shark fisheries, which has been in place since 1980 in Queensland Gulf waters, therefore offers a measure of protection to breeding female sawfish and their offspring.     

Impacts of bottom and suspended cultures of mussels <Emphasis Type="Italic">Mytilus</Emphasis> spp. on the surrounding sedimentary environment and macrobenthic biodiversity

The aim of this study was to quantify the effect of bottom and suspended mussel cultures, cultured in different physical environments, on the sedimentary environmental conditions and thereby the biodiversity structure of the associated macrofaunal community. We compared two bottom cultures (Limfjorden: microtidal, wind-driven; Oosterschelde: macrotidal) and one suspended culture (Ria de Vigo in an upwelling coastal region). The sedimentary environmental conditions (mud fraction, POC, PON, phosphorus content, chl a breakdown products) were significantly elevated underneath and surrounding bottom and suspended cultures compared to culture-free sediments that were nearby and hydrodynamically similar. The relative change in environmental conditions was more pronounced in the Oosterschelde compared to Limfjorden, most likely due to differences in hydrodynamic forcing and characteristics of the mussel bed. The effect of the suspended cultures in Ria de Vigo on the surrounding sediments was influenced by local topographic and hydrodynamic conditions. The impact of mussels on the benthic community due to biodeposition was clearly seen in the community structure. The species composition changed from species which are typically present in sandy environments to more small opportunistic species, which are typically present in organically enriched sediments. The impact of bottom cultures on the benthic community due to changes in the habitat under the presence of mussels was positive, especially in the Oosterschelde where an increase in the number of epibenthic species was seen. The influence of bottom cultures on the sedimentary environment and on the macrobenthic community seems to be very local. Within the mussel site in Limfjorden, differences were detected between sites where none or almost no mussels were present with sites where mussels were very abundant.     

Temporal distribution of perch (Perca fluviatilis L.) in a lake-reservoir (Moselle,France): analysis of catches with vertical gill nets

Four fishing periods within a yearly cycle between 1990 and 1991 were carried out in the lake-reservoir of Mirgenbach, lake of the nuclear power station in Cattenom (Moselle, France). The catches of perch (Perca fluviatilis L.) were analyzed.In all, about 630 perch were caught in 8 sampling stations. The analysis of seasonal catches of this carnivorous fish was made according to size and mesh; a simple correspondence factor analysis enabled us to establish that this species lived in different areas depending on the season.     

不同水深条件下刺参养殖池塘大型底栖动物群落结构季节性变化特征

于2012年7月至2013年4月调查了荣成靖海湾3个不同水深的刺参(Apostichopus japonicus)养殖池塘内大型底栖动物的构成,以了解不同水深对刺参养殖池塘环境条件的影响以及由此引起的大型底栖生物群落结构的改变。结果表明:3个不同水深梯度池塘(1#浅水位、2#正常水位和3#高水位)底部光照强度、叶绿素a(Chla)和总有机物(TOM)含量存在显著差异,各池塘水温差异不显著。光强、Chla和TOM含量在夏季、冬季和春季均表现为1#池塘显著高于3#池塘;秋季各池塘间光强和TOM含量差异不显著,Chla含量则表现为3#池塘显著高于1#池塘。各季节3个池塘间大型底栖动物在种类组成、丰度、生物量和多样性指数上均存在显著性差异。大型底栖动物丰度和生物量夏季均表现为1#池塘显著高于3#池塘,秋季和冬季则相反;春季1#池塘丰度显著高于3#池塘,生物量则差异不显著。这些差异主要与其各自优势种及其优势度指数大小有关。大型底栖动物多样性指数夏季和秋季均表现为1#池塘高于3#池塘,春季则相反,冬季各池塘间多样性指数差异不显著。单因子相似性分析(ANOSIM)表明,各季节3个池塘间大型底栖动物群落结构均存在显著差异,表明水深梯度对刺参养殖池塘大型底栖动物群落结构造成显著性影响。相似性百分比分析(SIMPER)显示,各季节对3个池塘间大型底栖动物群落差异起主要作用的物种为各个池塘的优势种。典范对应分析(CCA)表明,水深、Chla和TOM含量为影响大型底栖动物群落的主要环境因子。     

Ecological Aspects of the Downstream Migration of Introduced European Eels in the Uono River, Japan

We examined the species composition, timing of downstream migration, and biological characteristics of eels using catches at three commercial weirs from 1996 to 1998 in the Uono River, Niigata Prefecture, Japan, which is located farther north in the Japan Sea than where most Japanese eels, Anguilla japonica, recruit. Analyses of a sub-sample of the 292 eels caught in the weirs found that 93.6% were introduced European eels, Anguilla anguilla, that were sexually maturing silver phase eels. Their average age based on otolith annuli was 10.2 years, indicating a relatively high average growth rate of 6.3 cm year^–1. Catch records in 1996 and 1997 indicated that downstream migration occurred sporadically from the middle of August to the end of November and that catches generally coincided with abrupt increases in water discharge and drops in water temperature. The highest catches in both years occurred between the last quarter and new moon. These findings were similar to studies on this species in Europe and indicate that A. anguilla can grow rapidly, begin maturation, and start downstream migration far from its native range. This discovery of introduced eels initiating their spawning migration at the same time as A. japonica raises concerns about the potential impact of interbreeding between species and the possible effects on the fishery resources of A. japonica.     

Distribution and structure of macrobenthic fauna in the eastern Laptev Sea in relation to environmental factors

The Laptev Sea still ranks among the less known regions of the world’s ocean. Here, we describe the distribution and composition of macrobenthic communities of the eastern shelf and identify key environmental control factors. Samples were collected from dredge catches carried out at 11 stations at depths between 17 and 44 m in August/September 1993 during the TRANSDRIFT I cruise of the Russian R/V “Ivan Kireev.” A total of 265 species were identified from the samples, mostly crustaceans (94). Species numbers per station ranged from 30 to 104. Macrobenthic community distribution clearly showed a depth zonation, consisting of a “Shallow” zone (<20 m), dominated by the crustaceans Mysis oculata (Mysidacea) and Saduria entomon (Isopoda) as well as molluscs, an “Intermediate” zone (20–30 m), characterised by a clear dominance of the bivalve Portlandia arctica, and a “Deep” zone (>30 m) with bivalves P. arctica and Nuculoma bellotii as well as brittle stars Ophiocten sericeum and Ophiura sarsi being most abundant. According to a correlation analysis between faunal and environmental data a combination of duration of ice cover and water depth, respectively, showed the highest affinity to macrobenthic distribution. We conclude that the food input to the benthos, which is largely related to ice-cover regime, and the stress due to the pronounced seasonal salinity variability, which is primarily related to water depth, are prime determinants of macrobenthic community distribution and major causes of the prominent depth zonation in the Laptev Sea. Within the depth zones, sediment composition seems to be most significant in controlling the patterns in the distribution of the benthic fauna.     

A modified litter bag design for use in lentic habitats

A modified litter bag design and handling procedure were tested to establish whether these reduced the exaggerated fragmentation losses that occur with standard litter bags. The modified design was compared with standard coarse (5 mm) and fine (0.25 mm) mesh litter bags using Phragmitesleaf litter. All were positioned in a section of a reedbed subject to water level management but negligible water flow. Breakdown rates were significantly reduced with the modified design but these were still significantly greater than those in the fine mesh bags. Owing to the extended period, results were influenced by invertebrates colonising the fine mesh bags. The significance of bag design and invertebrate colonisation are discussed.     

<Emphasis Type="Italic">Cabillus atripelvicus</Emphasis>, a new species of gobiid fish from the Ogasawara Islands,with a key to species of the genus

Cabillus atripelvicus is described from three specimens, 26.1–40.6 mm in standard length, collected from depth 17–29 m in the Ogasawara Islands. In addition, two small specimens taken by dredge in 50–55 m from Sagami Bay, Honshu, and one from Tachibana Bay, Kyushu, are identified as this species but not designated as paratypes. Cabillus atripelvicus is distinguished from the four other described species of the genus by its high count of 18–20 pectoral rays, presence of median predorsal scales, longer pectoral fins, and distinctive color pattern, including black pelvic fins. The range of C. lacertops Smith, 1959 is extended east to the Marshall Islands and that of C. tongarevae (Fowler, 1927) east to American Samoa. More species remain to be described in the genus. Supplementary material to this paper is available in electronic format at     

Characterization of a microbial community capable of reducing perchlorate and nitrate in high salinity

Denitrifying up-flow packed-bed bioreactors fed with perchlorate and nitrate allowed for the examination of the impact of a variety of salt conditions (up to 10% w/v NaCl) on the complete perchlorate and nitrate removal capacity of the reactor using activated sludge taken from a municipal wastewater treatment plant. Based on the evaluation of the microbial community in the bioreactor by cloning analysis, Clostridium sp. and a Rhodocyclaceae bacteria were identified as the dominant clones. This suggests that they may be tolerant to high salt and can reduce both nitrate and perchlorate in such conditions.     

互花米草入侵对大型底栖动物群落垂直结构的影响

2012年8月,在浙江省玉环县漩门湾国家湿地公园,利用自制分层采样器,以5 cm为单位对0—25 cm泥层进行分层取样,研究潮间带互花米草滩涂和自然滩涂两种生境中大型底栖动物的垂直分布情况,以及互花米草入侵对大型底栖动物垂直结构的影响。两种生境中共获得大型底栖动物40种,其中软体动物18种,甲壳动物13种,环节动物4种,其他类群5种。在自然滩涂生境中获得的物种数为30种,互花米草生境为31种,两种生境的共有种有21种。互花米草和自然滩涂生境平均栖息密度分别为222.6株/m2和1052.8株/m2。研究结果表明:(1)大型底栖动物主要栖息在0—10 cm泥层深度;(2)大型底栖动物群落沿泥层深度存在分层分布现象;(3)互花米草入侵缩短了底栖动物的垂直分布距离,但对其主要栖息深度影响不大;(4)互花米草入侵改变了原来生境特征,导致大型底栖动物的群落结构发生变化。     

ASPECTS OF THE FISHERIES OF LAKE LIAMBEZI,CAPRIVI

SUMMARY

Lake Liambezi, situated in the Linyanti Swamp, Caprivi, is inhabited by 43 fish species. Population estimates with seine nets, rotenone and explosives gave values of 74 to 157 kg ha^?1. The composition of seine net catches differed markedly from gill net catches where non-Cichlids form a majority. Results of a fleet of gill nets show that best catches of 25 kg 50 m^?1 net night^?1 can be made with 60 mm mesh nets, catching predominantly non-Cichlids (Marcusenius macrolepidotus, Schilbe mystus, Synodontis spp.). A small commercial fishery is established on the lake, with 60 active fishermen using large mesh (100–150 mm) gill nets. Their catch consists mainly of cichlids (Sarotherodon andersoni and S. macrochir) and Clarias spp. Production figures dropped from 637 ton in 1973–74 to 115 ton in 1975–76. This drop is ascribed to reduced effort as well as a reduction in catch per unit effort. Recommendations are made to utilise the fishery potential of Lake Liambezi in a more balanced way by introducing small mesh gill nets to harvest non-Cichlid populations.     

Predation of eggs ofSitona hispidulus [Col.: Curculionidae] in alfalfa

The predation on egg populations ofSitona hispidus (Fabricius) [Col.: Curculionidae] in a stand of alfalfa was evaluated in 1982 and 1983. By using pitfall traps, catches of reproductive adults ofS. hispidulus were correlated with catches of carabid species, and potential egg predators were identified for further evaluation. Results indicated that predators removed 28 % of eggs under field conditions.Amara aenea DeGeer was found to be particularly efficient on eggs ofS. hispidulus under caged-field conditions.      

巨菌草不同生长时期对砒砂岩地区土壤理化性质及细菌群落结构的影响

[目的]揭示巨菌草种植前及其不同生长时期对砒砂岩地区土壤基本理化性质及细菌群落结构的影响,为更好应用巨菌草改良砒砂岩地区土壤提供理论依据。[方法]运用Illumina MiSeq高通量测序技术,在门、属水平上比较砒砂岩地区巨菌草不同生长时期对土壤细菌结构及多样性的影响。[结果]巨菌草种植后,三块样地的含水量在巨菌草分蘖期最低,在成熟期达到最高,土壤有机含量有所增加,土壤pH值变化不明显。细菌菌群结构：各样地的土壤细菌在巨菌草种植前及其生长的四个时期,门水平上的优势菌群均为放线菌门（Actinobacteria）、变形菌门（Proteobacteria）;在属水平上,含量最高的是未分类（unidentified）的细菌。Alpha多样性及群落组成丰度分析表明,三块样地种植巨菌草后,其细菌多样性和物种丰度均比种植前高,农田地土壤细菌多样性和物种丰度在巨菌草拔节期达到峰值,在分蘖期土壤细菌数量最大,比种植前土壤细菌数量高出8倍多,达2.09×10⁷ CFU/g干土,山顶地土壤细菌多样性和物种丰度在巨菌草分蘖期达到峰值,河滩地土壤细菌多样性在巨菌草苗期达到峰值,其丰富度在拔节期达到最大。[结论]砒砂岩地区土壤细菌群落结构在巨菌草不同生长时期相似,巨菌草能明显促进砒砂岩地区土壤细菌菌群多样性和丰富度,能有效提高土壤有机质含量,但砒砂岩地区各样地土壤细菌多样性、数量和有机质含量达到峰值的时期不同。     

金佛山方竹经营对扁刺栲群落物种多样性和优势种种群结构的影响

为探讨金佛山方竹经营对扁刺栲群落物种多样性和优势种种群结构的影响,该研究以金佛山的扁刺栲自然群落和金佛山方竹经营群落为对象,分析了两类群落的物种组成特征、物种多样性及优势种种群结构。结果表明：(1)两种群落内共记录维管束植物84种,隶属于40科63属,以樟科、蔷薇科、壳斗科、山茶科物种为主;扁刺栲为群落优势种,中华木荷和灰柯为次优势种,金佛山方竹为灌木层优势种,扁刺栲群落组成与亚热带其他地区的扁刺栲群落组成相似。(2)金佛山方竹经营群落的灌木层物种丰富度显著低于自然群落,草本层Shannon-Wiener指数和Pielou指数均显著低于自然群落。(3)扁刺栲和灰柯在自然群落中为稳定型种群,而在金佛山方竹经营群落中为衰退型种群,中华木荷在两类群落中均为衰退型种群。(4)自然群落中扁刺栲、中华木荷、灰柯种群的萌枝率、有萌个体率和幼苗相对优势度均高于金佛山方竹经营群落。综上认为,金佛山方竹经营对金佛山扁刺栲群落灌木层和草本层物种多样性产生了负面影响,并显著影响扁刺栲群落优势种种群更新和维持。     

Construction of a Tn5 derivative encoding bioluminescence and its introduction in Pseudomonas, Agrobacterium and Rhizobium

Summary A simple method based upon the use of a Tn5 derivative, Tn5-Lux, has been devised for the introduction and stable expression of the character of bioluminescence in a variety of gram-negative bacteria. In Tn5-Lux, the luxAB genes of Vibrio harveyi encoding luciferase are inserted on a SalI-BglII fragment between the kanamycin resistance (Km^r) gene and the right insertion sequence. The transposon derivative was placed on a transposition suicide vehicle by in situ recombination with the Tn5 suicide vector pGS9, to yield pDB30. Mating between Escherichia coli WA803 (pDB30) and a strain from our laboratory, Pseudomonas sp. RB100C, gave a Km^r transfer frequency of 10^-6 per recipient, a value 10 times lower than that obtained with the original suicide vehicle pGS9. Tn5-Lux was also introduced by insertion mutagenesis in other strains of gram-negative soil bacteria. The bioluminescence marker was expressed in the presence of n-decanal, and was monitored as chemiluminescence in a liquid scintillation counter. The recorded light intensities were fairly comparable among the strains, and ranged between 0.2 to 1.8x10⁶ cpm for a cell density of 10³ colony forming units/ml. Nodules initiated by bioluminescent strains of Rhizobium leguminosarum on two different hosts were compared for intensity of the bioluminescence they produced.     

Isolation and characterization of Arthrobacter sp. strain MCM B-436, an atrazine-degrading bacterium, from rhizospheric soil

Atrazine is one of the most environmentally prevalent s-triazine-ring herbicides. The widespread use of atrazine and its toxicity necessitates search for remediation technology. As atrazine is still used in India as a major herbicide, exploration of atrazine-degrading bacterial community is of immense importance. Considering lack of reports on well characterized atrazine-degrading bacterial cultures from India and wide diversity and density of microorganisms in rhizosphere, soil sample from rhizosphere of atrazine-resistant plant was studied. Arthrobacter sp. strain isolated in this investigation utilizes atrazine as the sole nitrogen source. In addition, the bacterium degrades other triazines such as ametryn, cyanizine, propazine and simazine. PCR analysis confirms the presence of atzBCD and triazine hydrolase (trzN) genes on chromosomal DNA. Sequencing of the trzN gene reveals high sequence similarity with trzN from Nocardioides sp. C190. An inducible and intracellular atrazine chlorohydrolase enzyme was isolated and partially purified from this isolate. This study confirms the presence of atrazine-degrading microbial population in Indian soils and could be used efficiently for remediation of contaminated soils. Presence of trzN gene indicates possible presence of bacterial community with more efficient and novel enzymatic capabilities. Comparison of enzyme and gene structure of this isolate with other geographically distinct atrazine-degrading strains will help us in the better understanding of gene transfer and evolution.     

Four new species of the genusSporobolomyces isolated from leaves in Thailand

Thirteen undescribed strains of ballistoconidium-forming yeasts, isolated from leaves collected in the suburbs and along the southeast seacoast of Bangkok, Thailand, were divided into four different groups in the genusSporobolomyces on the basis of morphological, physiological, biochemical, and chemotaxonomical characteristics, and analyses of the sequences of 18S rDNA and internal transcribed spacer regions. DNA-DNA reassociation experiments with related species revealed that these four groups were four new distinct species.Sporobolomyces nylandii sp. nov.,S. poonsookiae sp. nov.,S. blumeae sp. nov. andS. vermiculatus sp. nov. are proposed for these strains.     

Macrobenthos of a tidal impoundment at the Mai Po Marshes Nature Reserve,Hong Kong

The composition and spatial distribution patterns of the macrobenthic faunal assemblages of an 8-ha tidal impoundment operated as a traditional shrimp pond at the Mai Po Marshes Nature Reserve, Hong Kong, were studied in relation to temporal changes in local environmental conditions. Species richness, abundance and biomass of macrobenthos across 5 different sub-habitats (seaward, middle, and landward parts of open water unvegetated areas, and Phragmites- and Kandelia-dominated, vegetated areas) within the pond were examined bimonthly between January 1997 and January 1998. Grab samples were collected randomly within the sub-habitats. Key physical environmental parameters of the sampling sites were also measured. A total of 46 species of macrobenthos was recorded: 11 polychaetes, 11 molluscs, 13 crustaceans and 11 insects. Mean species density in the five sub-habitats ranged from 0 to 3907 indm^–2, with mean biomass ranging from 0 to 96.9 gm^–2. The macrobenthos showed spatial and temporal differences among the sub-habitats and across sampling times. Species abundances of Polychaeta, Mollusca and Crustacea were significantly higher in the three open water areas than in the two vegetated (Phragmites- and Kandelia-dominated) areas, with an inverse pattern for Insecta. There were no clear temporal patterns although abundance and biomass generally increased in the cooler months. Results of a canonical correspondence analysis suggest that macrobenthic species richness, abundance and biomass in the open areas were positively correlated with salinity, while water depth, dissolved oxygen and sediment organic matter content had little relationship with the macrobenthic assemblage parameters. Ordination by multi-dimensional scaling suggests that different habitats supported distinct macrobenthic assemblages. The macrobenthic assemblage in the tidal pond was less species rich but denser than those in the neighboring tidal mangrove and mudflat, suggesting that conversion of these areas into extensively managed tidal aquaculture ponds results in reduced species richness in tropical mangrove habitats.     

Trawl Selectivity Trials on the Deep-water Rose Shrimp (Parapenaeus longirostris) in Sicilian Waters

The selectivity of the traditional commercial bottom trawl net employed in Sicily to catch the Mediterranean deep-water rose shrimp, Parapenaeus longirostris, has been assessed. Two fishing campaigns were carried out in the Strait of Sicily and in the Southern Tyrrhenian Sea, using the covered cod-end method (mesh 20 mm vs. 31 mm). Of a total catch of 11,601 individuals, 23.4% escaped in the cover; the sample length structure from the Strait is unimodal, while that from the Tyrrhenian, polymodal. A logistic curve, fitted with a maximum likelihood criterion, has been used to model the selectivity data, in order to obtain the parameters CL_c50% (50% retention size), SR_75–25% (selection range) and SF (selection factor, i.e. CL_c50%/mesh). The two sets of data, besides a larger selection range for the Strait sample (5.2 mm vs. 2.3 mm), produced very similar estimates (retention sizes of 13.0 mm vs. 12.8 mm CL), fitting the logistic curve well. Almost no shrimp larger than 20 mm does escape from the cod-end; moreover, from the amount of damaged specimens found in the cover, even the evaded shrimps sustain a high fishing mortality. An increase of the present cod-end mesh opening, even above the size required by the EU bylaws (at present, 40 mm stretched) seems necessary for managing the fishery.