Commentary: Do we have a consistent terminology for species diversity? The fallacy of true diversity

There is no single best index that can be used to answer all questions about species diversity. Entropy-based diversity indices, including Hill’s indices, cannot account for geographical and phylogenetic structure. While a single diversity index arises if we impose several constraints—most notably that gamma diversity be completely decomposed into alpha and beta diversity—there are many ecological questions regarding species diversity for which it is counterproductive, requiring decomposability. Non-decomposable components of gamma diversity may quantify important intrinsic ecological properties, such as resilience or nestedness.     

The corallivorous flatworm Amakusaplana acroporae: an invasive species threat to coral reefs?

Fatal infestations of land-based Acropora cultures with so-called Acropora-eating flatworms (AEFWs) are a global phenomenon. We evaluate the hypothesis that AEFWs represent a risk to coral reefs by studying the biology and the invasive potential of an AEFW strain from the UK. Molecular analyses identified this strain as Amakusaplana acroporae, a new species described from two US aquaria and one natural location in Australia. Our molecular data together with life history strategies described here suggest that this species accounts for most reported cases of AEFW infestations. We show that local parasitic activity impairs the light-acclimation capacity of the whole host colony. A. acroporae acquires excellent camouflage by harbouring photosynthetically competent, host-derived zooxanthellae and pigments of the green-fluorescent protein family. It shows a preference for Acropora valida but accepts a broad host range. Parasite survival in isolation (5–7 d) potentially allows for an invasion when introduced as non-native species in coral reefs.     

Do hatchery-reared sea urchins pose a threat to genetic diversity in wild populations?

In salmonids, the release of hatchery-reared fish has been shown to cause irreversible genetic impacts on wild populations. However, although responsible practices for producing and releasing genetically diverse, hatchery-reared juveniles have been published widely, they are rarely implemented. Here, we investigated genetic differences between wild and early-generation hatchery-reared populations of the purple sea urchin Paracentrotus lividus (a commercially important species in Europe) to assess whether hatcheries were able to maintain natural levels of genetic diversity. To test the hypothesis that hatchery rearing would cause bottleneck effects (that is, a substantial reduction in genetic diversity and differentiation from wild populations), we compared the levels and patterns of genetic variation between two hatcheries and four nearby wild populations, using samples from both Spain and Ireland. We found that hatchery-reared populations were less diverse and had diverged significantly from the wild populations, with a very small effective population size and a high degree of relatedness between individuals. These results raise a number of concerns about the genetic impacts of their release into wild populations, particularly when such a degree of differentiation can occur in a single generation of hatchery rearing. Consequently, we suggest that caution should be taken when using hatchery-reared individuals to augment fisheries, even for marine species with high dispersal capacity, and we provide some recommendations to improve hatchery rearing and release practices. Our results further highlight the need to consider the genetic risks of releasing hatchery-reared juveniles into the wild during the establishment of restocking, stock enhancement and sea ranching programs.     

Does natural reforestation represent a potential threat to dung beetle diversity in the Alps?

Traditional agro-pastoral practices are in decline over much of the Alps, resulting in the complete elimination of livestock grazing in some areas. Natural reforestation following pastoral abandonment may represent a significant threat to alpine biodiversity, especially that associated with open habitats. This study presents the first assessment of the potential effects of natural reforestation on dung beetles by exploring the relationships between the beetle community (abundance, diversity, species turnover and assemblage structure) and the vegetation stages of ecological succession following pastoral abandonment. A hierarchical sampling design was used in the montane belt of the Sessera Valley (north-western Italian Alps). Dung beetles were sampled across 16 sampling sites set in four habitat types corresponding to four different successional stages (pasture, shrub, pioneer forest and beech forest) at two altitudinal levels. The two habitats at the extremes of the ecological succession, i.e. pasture and beech forest, had the greatest effect on the structure of local dung beetle assemblages. Overall, dung beetle abundance was greater in beech forest, whereas species richness, Shannon diversity and taxonomic diversity were significantly higher in pasture, hence suggesting this latter habitat can be considered as a key conservation habitat. Forests and pastures shared a lower number of species than the other pairs of habitats (i.e. species turnover between these two habitats was the highest). The two intermediate seral stages, i.e. shrub and pioneer forest, showed low dung beetle abundance and diversity values. Local dung beetle assemblages were also dependent on season and altitude; early-arriving species were typical of pastures of high elevation, whereas late-arriving species were typical of beech forests. It is likely that grazing in the Alps will continue to decrease in the future leading to replacement of open habitats by forest. This study suggests therefore that, at least in the montane belt, reforestation may have potentially profound and negative effects on dung beetle diversity. Maintaining traditional pastoral activities appears to be the most promising approach to preserve open habitats and adjacent beech forests, resulting in the conservation of species of both habitats.     

The soapberry bug,Jadera haematoloma (Insecta,Hemiptera, Rhopalidae): First Asian record,with?a?review of bionomics

The soapberry bug, Jadera haematoloma (Herrich-Schäffer, 1847) (Insecta: Hemiptera: Heteroptera: Rhopalidae: Serinethinae), a species native in tropical and subtropical regions of the New World and accidentally introduced to Hawaii, is reported for the first time from Asia (Taiwan). This record represents the first occurrence of the species in Asia. Stable populations composed of hundreds of specimens were found in seven localities of Kaohsiung City and one locality in Tainan City, and a single specimen was observed in Chiayi County. Aggregating adults and larvae fed in large numbers on the sapindacean plants Cardiospermum halicacabum L. and Koelreuteria elegans (Seem.) A. C. Smith ssp. formosana (Hayata) F. G. Meyer. Diagnostic characters of adults and larvae of Jadera haematoloma are discussed. A review of its bionomics and a bibliography are provided. Initial observations on the populations in southern Taiwan are presented. The species is potentially invasive, and further extension of its range is anticipated in Southeast Asia.     

Shading by Phragmites australis: a threat for species-rich fen meadows?

Abstract. Common reed (Phragmites australis Trin.) has spread in fen meadows on the Swiss Plateau during the last decades. An increased dominance of this tall grass may reduce the plant species richness and displace rare or endangered species because of the additional shade. To investigate whether this has actually happened and whether shading by Phragmites was likely to be responsible for the reduction, the plant species composition was surveyed in 241 plots (4 m²) with differing above-ground biomass of Phragmites (ABP). Species richness and the occurrence of characteristic fen species were negatively related to site productivity (total above-ground biomass), but correlations with ABP were generally weaker. The main change associated with increasing ABP within species-rich fens (alliances Molinion and Caricion davallianae) was an increase of species characteristic of the more species-poor alliance Filipendulion. Thus, Phragmites did apparently not play a disproportionate role in the reduction of species richness in the plant communities studied. Selective clipping experiments and light measurements also indicated that shading by Phragmites does not have a strong effect upon the performance of other species in the community, at least in the short term. The reason appeared to lie in the later seasonal growth of Phragmites compared with the other species. These results suggest that the direct impact of shading by Phragmites on the species richness of fen meadows is probably lower than has been assumed. However, possible long-term or indirect effects still need to be investigated.     

Is sampling subjectivity a distorting factor in surveys for vegetation diversity?

Sampling design has long been a key methodology issue of vegetation science. There are still unsolved problems, amongst which the influence of the positioning (spatial arrangement) of plots remains a basic one. Random sampling is considered the only statistically valid option, along with its amendment by stratifying. However, huge amounts of plot-sample data originated from using subjective plot positioning, involving a great deal of the author’s judgement, experience and bias. Field studies examining the role of subjectivity within a larger area (a landscape) are lacking. In the presented case-study, datasets sampled using computer-based geographically stratified random (R) and field-based subjective (S) designs are compared. In 1999–2000, 120 R and 244 S plots were spread across some 270 km². Their properties are compared regarding the differences in vegetation variability by ordination, and diversity by rarefaction. Although the differences are not conspicuous, both datasets partly contain different vegetation types and the S dataset contains at least some species-richer plots. The number of R plots had been clearly underrated while the expected species diversity values were nearly reached by the S. More R than S plots would probably be needed to reach the expected diversity maximum.