Mating behavior of the rock catfish, Silurus lithophilus

The mating behavior of the rock catfish Silurus lithophilus (Siluriformes: Siluridae), a species endemic to the Lake Biwa system, was observed from May to July in 1989–1994 along the rocky shore of the lake's outlet, the Seta River. The mating behavior of S. lithophilus involved a certain behavioral sequence: “chasing,”“clinging,” and “enfolding” while “squeezing” by the male; and “circling” by the spawned pair. The mating behavior of this species was basically similar to that of S. biwaensis, but greatly different from that of S. asotus, which spawns in running water (in ditches). The mating behavior of S. lithophilus (and S. biwaensis) might have developed as an adaptation to lentic environments such as the shores of the large river or the lake. Received: October 25, 2000 / Revised: February 25, 2001 / Accepted: March 8, 2001     

Features of the reproductive ecology of the rock catfish Silurus lithophilus

Some aspects of the reproductive ecology of the rock catfish Silurus lithophilus (Siluriformes: Siluridae), a species endemic to the Lake Biwa system, were investigated from April to July in 1989–1994. Field observations were conducted at a rocky shoal, which was also a spawning ground of S. biwaensis, along the shore of the Seta River, the lake's outlet. Spawning of S. lithophilus occurred around midnight at shallow, rocky places on the shoal (5–70 cm in water depth) from early May to mid-July, starting earlier than S. biwaensis (mid-May to mid-July). Spawning tended to occur at low water temperatures irrespective of high-water events, unlike S. biwaensis, and in low densities (fewer than 8 fish per night) compared to S. biwaensis (1–45 fish per night). Although the rock catfish tended to appear and spawn at higher frequencies on nights when S. biwaensis spawned or appeared, it always avoided conflict with the latter species by spawning at sites far from those used by S. biwaensis or after S. biwaensis had left the vicinity. The survival of eggs of S. lithophilus might be favored by a strategy of diverting predator attention from them by synchronizing spawning nights with S. biwaensis. Received: February 27, 2001 / Revised: October 17, 2001 / Accepted: November 8, 2001     

Development of bony skeleton in the ontogeny of lumpfish Cyclopterus lumpus (Cyclopteridae,Scorpaeniformes)

The development of bony skeleton is studied in the ontogeny of lumpfish Cyclopterus lumpus. In general, the sequence of appearance of the bony elements is similar to that in other teleost fishes with the exclusion of the absence of the basihyal anlage and the presence of only cartilaginous basibranchials in all examined larvae and juveniles. Bony elements of the ventral sucking disc appear very early (together with the parasphenoid, maxilla, opercle, and cleithrum), and they are characterized by rapid development. The intercalar is observed in the neurocranium of the larvae. In late larvae and in juveniles, the anlage of the medial extrascapular fused with the parietal and the lateral extrascapular attached to the pterotic are registered. C. lumpus differs from Cyclopsis tentacularis and the species of the genus Eumicrotremus in the presence of the cutting in the upper margin of the ceratohyal instead of the berycoid opening. The larvae and juveniles of C. lumpus and C. tentacularis are characterized by the presence of a reduced spiny ray at the origin of the second dorsal fin, most likely, representing a plesiomorphy of the Cyclopteridae. In the larvae of C. lumpus and C. tentacularis of a similar size, the degree of development of skeletal elements is the same, which suggests a similar developmental rate of their skeletal elements.     

Multiple colonizations of Lake Biwa by Sarcocheilichthys fishes and their population history

Rapid adaptation and speciation have not been well documented for organisms in Lake Biwa, Japan, the oldest ancient lake in East Asia. To examine these processes, we focused on the divergence of Sarcocheilichthys gudgeons and conducted phylogeographic and population genetic analyses using mitochondrial DNA sequences and microsatellite data. No remarkable genetic differentiation was found between two species, S. biwaensis and S. variegatus microoculus, both endemic to Lake Biwa, whereas this species group, including S. v. variegatus, was genetically divided into three major regional groups: the Lake Biwa, Ise Bay, and western groups. Divergent mtDNA haplotypes were included within the Lake Biwa and western groups, strongly suggesting secondary contacts among allopatrically isolated populations. Dating for mtDNA phylogeny using a geological constraint suggested the colonization of Lake Biwa by multiple Sarcocheilichthys lineages that diverged from each other in the early–middle Pleistocene. Coalescent-based population analyses indicated that the local populations colonized the rocky bottom habitat in Lake Biwa from other habitats after the Last Glacial Maximum, likely reflecting past environmental changes in the lake, including the disappearance of rocky areas during the glacial climate. Divergent morphological adaptation in Sarcocheilichthys associated with substrate type may have rapidly proceeded along with environmental changes.     

Stereotyped sequence of mating behavior in the Far Eastern catfish, Silurus asotus, from Lake Biwa

 Mating behavior of the Far Eastern catfish, Silurus asotus (Siluriformes: Siluridae), was observed in a ricefield system facing the shore of Lake Biwa in mid-May to early June in 1990–1997. A set behavioral sequence similar to those of two other silurid fishes, S. biwaensis and S. lithophilus, both endemic to the Lake Biwa system, was observed: “chasing,”“clinging,”“enfolding” while “squeezing” by the male, and “circling” by the spawning pair. This form of mating behavior is quite different from that of S. asotus reported from the Ooi River system in Kyoto Prefecture, which mainly spawns in running water in ditches. Received: April 10, 2001 / Revised: November 5, 2001 / Accetped: November 20, 2001     

Reproductive ecology of the Far Eastern catfish, Silurus asotus (Siluridae), with a comparison to its two congeners in Lake Biwa, Japan

Spawning activity of the catfish, Silurus asotus, takes place in temporary water (rice fields) from early evening to midnight, generally in connection with rainfall, from late April to late August. Spawning of the catfish was correlated with hydrographic parameters dependent on rainfall: daily precipitation, turbidity, water depth, and water temperature. The spawning habits of the catfish, and in particular the use of temporary waters such as rice fields that become submerged after rainfall or by irrigation, are presumed to be adaptations to the Asian monsoon climate with a pronounced rainy season. The apparent sex ratio of the catfish was extremely biased toward females. Intraspecific variation in the reproductive ecology, particularly mating behavior, of this species is observed among local populations. Factors that may have caused this variation are discussed in the context of a comparison of mating behavior, reproductive environment, and sex ratio between the Lake Biwa population of S. asotus and other conspecific populations, as well as two other species of silurid catfish that occur in the Lake Biwa drainage, S. biwaensis and S. lithophilus.     

Timing of ontogenetic changes of two cranial regions in Sotalia guianensis (Delphinidae)

Despite the fact that heterochronic processes seem to be an important process determining morphological evolution of the delphinid skull, previous workers have not found allometric scaling as relevant factor in the differentiation within the genus Sotalia. Here we analyzed the skull ontogeny of the estuarine dolphin S. guianensis and investigate differential growth and shape changes of two cranial regions – the neurocranium and the face – in order to evaluate the relevance of cranial compartmentalization on the ontogeny of this structure. Our results show that, even though both cranial regions stop growing at adulthood, the face has higher initial growth rates than the neurocranium. The rate of shape changes is also different for both regions, with the face showing a initially higher, but rapidly decreasing rate of change, while the neurocranium shows a slow decreasing rate, leading to persistent and localized shape changes throughout adult life, a pattern that could be related to epigenetic regional factors. The pattern of ontogenetic shape change described here is similar to those described for other groups of Delphinidae and also match intra and interspecific variation found within the family, suggesting that mosaic heterochrony could be an important factor in the morphological evolution of this group.     

Early development of the skull of Sander lucioperca (L.) (Teleostei: Percidae) relating to growth and mortality

The early osteological development of the skull (chondrocranium and osteocranium) of the pikeperch Sander lucioperca was studied. Specimens were reared at two temperatures, 15·5 and 18·0° C, from hatching until 47 and 43 days after fertilization (DAF), respectively. The skeletal elements characteristic for the different developmental stages were the same at both rearing temperatures, but pikeperch reared at 15·5° C reached the developmental stages later. The formation of the functional complexes, the neurocranium, jaws and suspensorium, branchial basket and hyoid arch, was evaluated chronologically. The focus was on skull development during several functional changes: at hatching, at the shift from endogenous to mixed feeding, the shift to exclusively exogenous feeding and upon reaching the final prey-capture mechanism. Growth in total length differed between fishes reared at the two temperatures, except during a phase of very slow growth from the end of the embryonic stage until the second larval stage. The latter phase, in which most of the bony elements of the viscerocranium started to form, was marked by high mortality. When exogenous feeding began, the growth rates at both temperatures increased distinctly and the first bony elements were formed in the neurocranium. Specimens reared at 18·0° C grew continuously, but those at 15·5° C showed a second period of slow growth and high mortality. Fish reared at 18·0° C reached the successive larval stages distinctly earlier than fish reared at 15·5° C.     

A survey on coccidian infection of Lake Biwa fishes in Japan,with the description of four new species of Goussia Labbé, 1896 (Apicomplexa)

Thirty-two specimens of 11 freshwater fish species from Lake Biwa, Japan were surveyed for coccidian infections. Four fish species proved to be infected with apicomplexans belonging to the genus Goussia. Altogether, seven Goussia species were found. Oöcysts of four species inhabiting the intestinal epithelium were shed at the sporulated stage. Two other intestinal species left the fish unsporulated. A few relatively large and aged oöcysts of a further species were found in the renal tubules. The sporulated intestinal species were described as Goussia biwaensis n. sp., G. grygieri n. sp., G. nipponica n. sp. and G. wakabayashii n. sp.     

A new diminutive genus and species of catfish from Lake Tanganyika (Siluriformes: Clariidae)

The examination of material representing one of Lake Tanganyika's six previously recognized endemic catfish lineages, has revealed the presence of an additional genus of clariid, described here as Pseudotanganikallabes new genus. This genus is represented by a single species, Pseudotanganikallabes prognatha sp. nov., which is distinguished from all other clariids by its lack of an infraorbital series, the presence of multiple osseous connections between the swim bladder capsules and elements of the neurocranium, the absence of an ethmoid notch, the presence of a very large, egg‐shaped occipital fontanelle and the extension of the lower lip beyond the margin of the upper jaw. A combination of additional external and molecular characters serves to further distinguish this taxon from all currently recognized clariid species. Phylogenetic analysis of mitochondrial (cytb) and nuclear (18S‐ITS1‐5.8S‐ITS2‐28S) sequence data supports the creation of a new genus for this species, as it appears to represent an independent, monophyletic lineage within the family Clariidae.     

Study of the pectoral girdle and fins of the Late Carboniferous sibyrhynchid iniopterygians (Vertebrata,Chondrichthyes, Iniopterygia) from Kansas and Oklahoma (USA) by means of microtomography,with comments on iniopterygian relationships

The latest works on iniopterygians question their monophyly when considering only the neurocranium of the two families (Sibyrhynchidae and Iniopterygidae), which have different conditions of preservation. Some of the synapomorphies of the Iniopterygia concern the pectoral girdle and fins. However, the anatomy of these different elements is still poorly known in this taxon. Here we describe in details three dimensionally preserved cartilages of the pectoral girdle and fins of the sibyrhynchid Iniopera sp. These structures have been extracted virtually from phosphatised nodules thanks to conventional and synchrotron microtomography, using absorption and phase contrast based techniques in the later case. The pectoral girdle of Iniopera sp. consists of three elements, which are, from dorsal to ventral, a paired suprascapular cartilage, a pair of robust scapulocoracoids and an unpaired intercoracoid cartilage. The scapular part of the scapulocoracoids is extremely reduced and the suprascapular cartilages link the scapulcoracoids to the rear of the neurocranium. These characters may be iniopterygian synapomorphies. Iniopterygians, stem and crown-holocephalans share a basipterygium that articulates with the pectoral girdle and bears an enlarged first pectoral fin radial. Posteriorly, the basipterygium articulates with either a well-defined metapterygium (in crown-holocephalans) or a metapterygial axis (in stem-holocephalans).     

An exceptionally preserved Late Devonian actinopterygian provides a new model for primitive cranial anatomy in ray-finned fishes

Actinopterygians (ray-finned fishes) are the most diverse living osteichthyan (bony vertebrate) group, with a rich fossil record. However, details of their earliest history during the middle Palaeozoic (Devonian) ‘Age of Fishes'' remains sketchy. This stems from an uneven understanding of anatomy in early actinopterygians, with a few well-known species dominating perceptions of primitive conditions. Here we present an exceptionally preserved ray-finned fish from the Late Devonian (Middle Frasnian, ca 373 Ma) of Pas-de-Calais, northern France. This new genus is represented by a single, three-dimensionally preserved skull. CT scanning reveals the presence of an almost complete braincase along with near-fully articulated mandibular, hyoid and gill arches. The neurocranium differs from the coeval Mimipiscis in displaying a short aortic canal with a distinct posterior notch, long grooves for the lateral dorsal aortae, large vestibular fontanelles and a broad postorbital process. Identification of similar but previously unrecognized features in other Devonian actinopterygians suggests that aspects of braincase anatomy in Mimipiscis are apomorphic, questioning its ubiquity as stand-in for generalized actinopterygian conditions. However, the gill skeleton of the new form broadly corresponds to that of Mimipiscis, and adds to an emerging picture of primitive branchial architecture in crown gnathostomes. The new genus is recovered in a polytomy with Mimiidae and a subset of Devonian and stratigraphically younger actinopterygians, with no support found for a monophyletic grouping of Moythomasia with Mimiidae.     

Redescription of Triplophysa alticeps (Herzenstein, 1888), the type species of the subgenus Qinghaichthys Zhu, 1981, with notes on its taxonomic position

External morphology and osteology of Triplophysa alticeps, type species of the subgenus Qinghaichthys, is described. A detailed morphological comparison of this species with other species of the genus is also provided. The characteristic traits of T. alticeps include: a short and deep head, neurocranium swollen in the postorbital part, significantly reduced seismosensory system, absence of brushlike aggregations of tubercles on both sides of the head in males, three pectoral radialia, short ventroanal distance, absence of manubrium, and several other features. Possibly, the subgenus Qinghaichthys should be recognized as valid, and should include the species with three radialia of the pectoral fin, a direct contact of the swollen halves of the air-bladder capsule, short swollen head, and without brushlike aggregations of tubercles on the sides of the head in males.     

Early development of the chondrocranium in Salmo letnica(Karaman, 1924)(Teleostei: Salmonidae)

The ontogenetic development of the chondrocranium of Ohrid trout Salmo letnica was studied from hatching until 92 days post‐hatching (dph). Most of the samples were in toto trypsin cleared and stained, some specimens were used for serial histological sectioning. The serial histological sections of fish specimens at the age of 92 dph were used for a graphical reconstruction of the cartilaginous neurocranium. A chronological evaluation of the formation of the cartilaginous skull in the early development of S. letnica was performed. In order to investigate to what degree the ontogeny of the Ohrid trout is unique, the results were compared with data of the development of other salmonids, as well as some non‐salmonid teleosts. The development of the cartilaginous structures of the Ohrid trout was found to be similar to that of other salmonids. Most of the cartilage structures of the neurocranium and the viscerocranium are present at the moment of hatching of this species. A fully developed chondrocranium was observed at the age of 92 dph, when the first signs of cartilage resorption could also be observed.     

Classification of late embryonic stages of medaka,Oryzias latipes

To indicate more clearly the stages of development in late embryo of the medaka,Oryzias latipes, the quotients obtained from the length of tail (measured from the vent to distal end of caudal fin) in microns divided by 100 μm were adopted to nominate stage numbers. The 25 stages thus defined were checked against the calcification of 8 elements in the chondrocranium, and also 4 other structures which develop numerically. By the observations of development (cartilages and calcification indicated by alizarin red S staining) of the 8 elements—parasphenoid, clavicle, operculum, occipital arch, hyomandibular, ceratohyal, anterior otic process and mandibular, the stages defined here were found to classify the order and degree of development of bony elements more precisely than other stage classification in the past. The numerical structures—branchiostegal rays, pharyngeal teeth, vertebrae and mandibular teeth also demonstrated clearly their development corresponding to tail length. The “critical” stages in embryonic development of the medaka as shown by the length of notochord with vacuolized cells associated with development of bony elements were also noted.     

Evaluation of Trimethoprim-sulphamethoxazole Compound in Treatment of Salmonella Infections

Fifty patients suffering from infections caused by various salmonella species were treated with trimethoprim-sulphamethoxazole compound. Twenty-three had enteric fever and two were biliary carriers of Salmonella typhi. The other 25 suffered from infections caused by salmonella species other than S. typhi or S. paratyphi B. Twenty-one of the patients with enteric fever responded clinically to the drug, one failed treatment, and one died. Two patients suffering from typhoid fever relapsed and three temporarily excreted S. typhi in stools following treatment. One of the typhoid carriers was successfully treated. All patients with infections caused by salmonella species other than S. typhi or S. paratyphi B responded to treatment but 17 continued to excrete the organism in their stools after the course of trimethoprim-sulphamethoxazole compound. Four patients developed rashes during therapy and two became anaemic.     

Relationship between distribution and bottom sediment of submerged macrophytes in the Seta River,Shiga Prefecture,Japan

The purpose of this study was to survey the distribution and habitat of submerged macrophytes in the Seta River outflow from Lake Biwa, Shiga Prefecture, Japan. To accomplish this, I instituted a field survey with sampling on January 2009. I collected nine submerged macrophyte species during the diving operation. Sample collection showed that submerged macrophytes flourished on both sides of the river but did not flourish in the central portion of the river. Alien species (Egeria densa and Elodea nuttallii) were collected on all survey lines, while domestic species (Ceratophyllum demersum, Myriophyllum spicatum, Hydrilla verticillata, Vallisneria biwaensis, Vallisneria denseserrulata, Potamogeton maackianus, and Potamogeton malaianus) were collected in large amounts on the survey lines near Lake Biwa. The dominant species in cohesive soil or fine soil was Egeria densa, while the dominant species in sand gravel was Potamogeton maackianus. Although Egeria densa was collected in sand gravel too, Potamogeton maackianus was not collected in cohesive soil or fine soil, which indicates that Egeria densa has high fertility and can survive in an oxygen-poor environment, while Potamogeton maackianus cannot survive in an oxygen-poor environment.     

Evolutionary Genomics of Transposable Elements in Saccharomyces cerevisiae

Saccharomyces cerevisiae is one of the premier model systems for studying the genomics and evolution of transposable elements. The availability of the S. cerevisiae genome led to unprecedented insights into its five known transposable element families (the LTR retrotransposons Ty1-Ty5) in the years shortly after its completion. However, subsequent advances in bioinformatics tools for analysing transposable elements and the recent availability of genome sequences for multiple strains and species of yeast motivates new investigations into Ty evolution in S. cerevisiae. Here we provide a comprehensive phylogenetic and population genetic analysis of all Ty families in S. cerevisiae based on a systematic re-annotation of Ty elements in the S288c reference genome. We show that previous annotation efforts have underestimated the total copy number of Ty elements for all known families. In addition, we identify a new family of Ty3-like elements related to the S. paradoxus Ty3p which is composed entirely of degenerate solo LTRs. Phylogenetic analyses of LTR sequences identified three families with short-branch, recently active clades nested among long branch, inactive insertions (Ty1, Ty3, Ty4), one family with essentially all recently active elements (Ty2) and two families with only inactive elements (Ty3p and Ty5). Population genomic data from 38 additional strains of S. cerevisiae show that the majority of Ty insertions in the S288c reference genome are fixed in the species, with insertions in active clades being predominantly polymorphic and insertions in inactive clades being predominantly fixed. Finally, we use comparative genomic data to provide evidence that the Ty2 and Ty3p families have arisen in the S. cerevisiae genome by horizontal transfer. Our results demonstrate that the genome of a single individual contains important information about the state of TE population dynamics within a species and suggest that horizontal transfer may play an important role in shaping the genomic diversity of transposable elements in unicellular eukaryotes.     

SEM study of the oral cavity of members of the Kyphosidae and Girellidae (Pisces,Teleostei), with remarks on Crenidens (Sparidae), focusing on teeth and taste bud numbers and distribution

The present study compares dental morphology and taste bud distribution in the oral cavity of four species of the teleost family Kyphosidae, five species of Girellidae and one species of Sparidae. Some of these species are predominantly herbivorous, while others are omnivorous with a high portion of invertebrates in their diets. All the kyphosids feature one row of frontal cusped teeth on their jaws and areas of miniature teeth on the tongue and palate; the girellid species feature 2–5 rows of denticulate teeth, and no teeth inside the oral cavity. The total number of taste buds in the oral cavity is higher in Girella spp. than in the kyphosids, and their number is species-specific, not correlated with fish size. For example, Kyphosus bigibbus of 500 mm standard length bears 1780 taste buds, while the kyphosid Neoscorpis lithophilus of 80 mm bears 3460. The maximum number of taste buds, 7900, is found in Girella punctata of 60 mm standard length, and the minimum number, 1320, in Kyphosus vaigiensis of 175 mm. The higher number of taste buds appears to characterize species that possess a more diversified diet. The present study contributes to our understanding of the differences between the two families Kyphosidae and Girellidae. In particular, it relates the eco-morphological adaptations to the type of diet consumed by the various species.