Oral health of the Paleoamericans of Lagoa Santa,central Brazil

The peopling, origins, and early prehistory of the Americas are topics of intense debate. However, few studies have used human remains to document and interpret patterns of health and lifestyle of Paleoamericans. This study provides the first investigation to characterize oral health in a series of early Holocene skeletal remains from Lagoa Santa, Brazil, a locality containing the remains of some of the earliest inhabitants of South America (10,000–7,000 BP). The sample is composed of 949 teeth and 1925 alveoli from an estimated 113 individuals excavated from 17 archaeological sites located in the State of Minas Gerais. We compare dental caries and abscess prevalence at Lagoa Santa to a large sample of human skeletons from the Western Hemisphere Project (WHP) database using both individual and tooth/alveolus count methods. In addition, antemortem tooth loss and tooth wear were analyzed in Lagoa Santa by sex and age. The results show that Lagoa Santa dental caries and abscess prevalence are significantly higher than observed among other hunter–gatherers included in the WHP database, except when abscess prevalence is considered by individual count. Adult females have less tooth wear coupled with higher prevalence of dental caries and antemortem tooth loss than adult males. These results point to an unexpected record of poor oral health at Lagoa Santa, especially among females. A diet based on a highly cariogenic combination of wild tubers and fruits is suggested as an explanation for the elevated rate, characterizing an early adaptation to a tropical environment in South America. Am J Phys Anthropol 154:11–26, 2014. © 2014 Wiley Periodicals, Inc.     

Early South Americans Cranial Morphological Variation and the Origin of American Biological Diversity

Recent South Americans have been described as presenting high regional cranial morphological diversity when compared to other regions of the world. This high diversity is in accordance with linguistic and some of the molecular data currently available for the continent, but the origin of this diversity has not been satisfactorily explained yet. Here we explore if this high morphological variation was already present among early groups in South America, in order to refine our knowledge about the timing and origins of the modern morphological diversity. Between-group (Fst estimates) and within-group variances (trace of within-group covariance matrix) of the only two early American population samples available to date (Lagoa Santa and Sabana de Bogotá) were estimated based on linear craniometric measurements and compared to modern human cranial series representing six regions of the world, including the Americas. The results show that early Americans present moderate within-group diversity, falling well within the range of modern human groups, despite representing almost three thousand years of human occupation. The between-group variance apportionment is very low between early Americans, but is high among recent South American groups, who show values similar to the ones observed on a global scale. Although limited to only two early South American series, these results suggest that the high morphological diversity of native South Americans was not present among the first human groups arriving in the continent and must have originated during the Middle Holocene, possibly due to the arrival of new morphological diversity coming from Asia during the Holocene.     

Human skeletal remains from Sabana de Bogotá, Colombia: A case of Paleoamerican morphology late survival in South America?

Human skeletal remains of the first Americans are scarce, especially in North America. In South America the situation is less dramatic. Two important archaeological regions have generated important collections that allow the analysis of the cranial morphological variation of the Early Americans: Lagoa Santa, Brazil, and Sabana de Bogotá, Colombia. Human crania from the former region have been studied by one of us (WAN) and collaborators, showing that the cranial morphology of the first South Americans was very different from that prevailing today in East Asia and among Native Americans. These results have allowed for proposing that the New World may have been colonized by two different biological populations in the final Pleistocene/early Holocene. In this study, 74 human skulls dated between 11.0 and 3.0 kyr, recovered in seven different sites of Sabana de Bogotá, Colombia, were compared with the world cranial variation by different multivariate techniques: Principal Components Analysis, Multidimensional Scaling, and Cluster of Mahalanobis distance matrices. The Colombian skeletal remains were divided in two chronological subgroups: Paleocolombians (11.0-6.0 kyr) and Archaic Colombians (5.0-3.0 kyr). Both quantitative techniques generated convergent results: the Paleocolombians show remarkable similarities with Lagoa Santa and with modern Australo-Melanesians. Archaic Colombians exhibited the same morphological patterns and associations. These findings support our long-held proposition that the early American settlement may have involved two very distinct biological populations coming from Asia. On the other hand, they suggest the possibility of late survivals of the Paleoamerican pattern not restricted to isolated or marginal areas, as previously thought.     

Early Holocene human skeletal remains from Santana do Riacho,Brazil: implications for the settlement of the New World

In this study we compare the cranial morphology of several late Paleoindian skeletons uncovered at Santana do Riacho, Central Brazil, with worldwide human cranial variation. Mahalanobis Distance and Principal Component Analysis are used to explore the extra-continental morphological affinities of the Brazilian Paleoindian sample. Santana do Riacho is a late Paleoindian burial site where approximately 40 individuals were recovered in varying states of preservation. The site is located at Lagoa Santa/Serra do Cipó, State of Minas Gerais. The first human activities in this rockshelter date back to the terminal Pleistocene, but the burials are bracketed between circa 8200 and 9500BP. The collection contains only six skulls well-enough preserved to be measured. The Santana do Riacho late Paleoindians present a cranial morphology characterized by long and narrow neurocrania, low and narrow faces, with low nasal apertures and orbits. The multivariate analyses show that they exhibit strong morphological affinities with present day Australians and Africans, showing no resemblance to recent Northern Asians and Native Americans. These findings confirm our long held opinion that the settlement of the Americas was more complicated in terms of biological input than has been widely assumed. The working hypothesis is that two very distinct populations entered the New World by the end of the Pleistocene, and that the transition between the cranial morphology of the Paleoindians and the morphology of later Native Americans, which occurred around 8-9ka, was abrupt. This, in our opinion, is a more parsimonious explanation for the diversity detected than a long, local microevolutionary process mediated by selection and drift. The similarities of the first South Americans with sub-Saharan Africans may result from the fact that the non-Mongoloid Southeast Asian ancestral population came, ultimately, from Africa, with no major modification in the original cranial bau plan of the first modern humans.     

Early Holocene human skeletal remains from Sumidouro Cave, Lagoa Santa, Brazil: history of discoveries, geological and chronological context, and comparative cranial morphology

In this work, we present new evidence supporting the idea that the first Americans were very distinct from late and recent Native Americans and Asians in terms of cranial morphology. The study is based on 30 early Holocene specimens recovered from Sumidouro Cave (Lagoa Santa region, central Brazil) by Peter Lund in 1843. Sumidouro is the largest known collection of Paleoindian skulls deriving from a single site. Six different multivariate statistical methods were applied to assess the morphological affinities of the Sumidouro skulls in comparison to Howells' worldwide extant series and late archaic Brazilian series (Base Aérea and Tapera). The results show a clear association between Sumidouro and Australo-Melanesians and none with late Asian and Amerindian series. These results are in accordance with those of previous studies of final Pleistocene/early Holocene human skulls from South, Central, and North America, attesting to a colonization of the New World by at least two different, succeeding biological populations: an early one with a cranial morphology similar to that found today in the African and Australian continents, and a later one with a morphology similar to that found today among northeastern Asians.     

Contradictions and Concordances in American Colonization Models

The traditional view of American colonization during the late Pleistocene has largely been conditioned on early conceptions of the timing and extent of continental glaciations and the age and distribution of archeological sites. A review of newer, high resolution genetic data, both from modern populations and ancient DNA samples, along with the emergence of several early archeological sites in both North and South America, and reconsiderations of the glacial dynamics in North America indicate that some aspects of the traditional view need reconsideration. It seems obvious from archeological data that a preglacial occupation of the Americas needs to be closely examined. Accumulating molecular genetic data raises new questions about the timing and population size of the initial colonization(s), while a closer examination of glacial models suggests that a number of routes into the Americas may have been available until fairly late in the last glacial cycle.     

The peopling of the Americas and the origin of the Beringian occupation model

The current model for peopling of the Americas involves divergence from an ancestral Asian population followed by a period of population isolation and genetic diversification in Beringia, and finally, a rapid expansion into and throughout the Americas. Studies in the 1970s sought to characterize the biological relationships between different indigenous populations and first proposed an occupation of Beringia. More recent studies using molecular genetic markers often neglect to reference early works that laid the groundwork for current colonization models. We address this matter, and briefly summarize the literature and technological advances that contributed to our current understanding of the peopling of the Americas. Furthermore, we argue that describing the process of peopling of the Americas as “migrations from Asia” minimizes the significant genetic diversification that occurred outside of Asia, and offends indigenous Americans by discounting their origin narratives and land rights. Rather than referring to the indigenous peoples of the Americas as “migrants” or “immigrants,” we recommend consistency in the language used to describe all post‐glacial expansions of people into Asia, Europe and the Americas.     

Mitochondrial DNA studies of Native Americans: Conceptions and misconceptions of the population prehistory of the Americas

A decade ago, the first reviews of the collective mitochondrial DNA (mtDNA) data from Native Americans concluded that the Americas were peopled through multiple migrations from different Asian populations beginning more than 30,000 years ago. 1 These reports confirmed multiple‐wave hypotheses suggested earlier by other sources and rejected the dominant Clovis‐first archeological paradigm. Consequently, it appeared that molecular biology had made a significant contribution to the study of American prehistory. As Cann 2 comments, the Americas held the greatest promise for genetics to help solve some of the mysteries of prehistoric populations. In particular, mtDNA appeared to offer real potential as a means of better understanding ancient population movements. A decade later, none of the early conclusions remain unequivocal. Nevertheless, in its maturity, the study of Native American mtDNA has produced a volume of reports that still illuminate the nature and timing of the first peopling and postcolonization population movements within the New World.     

The Oldest Case of Decapitation in the New World (Lapa do Santo,East-Central Brazil)

We present here evidence for an early Holocene case of decapitation in the New World (Burial 26), found in the rock shelter of Lapa do Santo in 2007. Lapa do Santo is an archaeological site located in the Lagoa Santa karst in east-central Brazil with evidence of human occupation dating as far back as 11.7–12.7 cal kyBP (95.4% interval). An ultra-filtered AMS age determination on a fragment of the sphenoid provided an age range of 9.1–9.4 cal kyBP (95.4% interval) for Burial 26. The interment was composed of an articulated cranium, mandible and first six cervical vertebrae. Cut marks with a v-shaped profile were observed in the mandible and sixth cervical vertebra. The right hand was amputated and laid over the left side of the face with distal phalanges pointing to the chin and the left hand was amputated and laid over the right side of the face with distal phalanges pointing to the forehead. Strontium analysis comparing Burial 26’s isotopic signature to other specimens from Lapa do Santo suggests this was a local member of the group. Therefore, we suggest a ritualized decapitation instead of trophy-taking, testifying for the sophistication of mortuary rituals among hunter-gatherers in the Americas during the early Archaic period. In the apparent absence of wealth goods or elaborated architecture, Lapa do Santo’s inhabitants seemed to use the human body to express their cosmological principles regarding death.     

The cranial morphology of the Botocudo Indians,Brazil

The Botocudo Indians were hunter‐gatherer groups that occupied the East‐Central regions of Brazil decimated during the colonial period in the country. During the 19th century, craniometric studies suggested that the Botocudo resembled more the Paleoamerican population of Lagoa Santa than typical Native Americans groups. These results suggest that the Botocudo Indians might represent a population that retained the biological characteristics of early groups of the continent, remaining largely isolated from groups that gave origin to the modern Native South American variation. Moreover, recently, some of the Botocudo remains have been shown to have mitochondrial and autosomal DNA lineages currently found in Polynesian populations. Here, we explore the morphological affinities of Botocudo skulls within a worldwide context. Distinct multivariate analyses based on 32 craniometric variables show that 1) the two individuals with Polynesian DNA sequences have morphological characteristics that fall within the Polynesian and Botocudo variation, making their assignation as Native American specimens problematic, and 2) there are high morphological affinities between Botocudo, Early Americans, and the Polynesian series of Easter Island, which support the early observations that the Botocudo can be seen as retaining the Paleoamerican morphology, particularly when the neurocranium is considered. Although these results do not elucidate the origin of the Polynesian DNA lineages among the Botocudo, they support the hypothesis that the Botocudo represent a case of late survival of ancient Paleoamerican populations, retaining the morphological characteristics of ancestral Late Pleistocene populations from Asia. Am J Phys Anthropol 157:202–216, 2015. © 2015 Wiley Periodicals, Inc.     

U-series dating and taphonomy of Quaternary vertebrates from Brazilian caves

The geochronology and taphonomy of internationally important fossil bearing cave deposits were studied, both in the semi-arid Northern Bahia area and the subtropical southeastern Lagoa Santa area of Brazil. Taphonomic analysis suggests that the processes responsible for bone accumulation in the Brazilian caves vary between sites, and taphonomic bias can therefore be significant in causing differences in faunal composition. In the Toca da Boa Vista caves the presence of single articulated skeletons, and the entrance-related distribution indicate that random penetration of animals is the main mechanism of fossil accumulation, a process that biases the assemblage to smaller species, and takes place over extended time periods. In nearby Toca dos Ossos cave transport by runoff in the cave river is predominant, and biases the fauna remains to larger more robust bones and species. Deposition probably also occurred only at times of enhanced runoff giving a more contemporaneous assemblage. Similar processes were responsible for emplacement of the copious fossil remains in the more humid Lagoa Santa area, where terrigenous fossil deposits are found intercalated by massive speleothem calcite layers. In this area runoff under a drier climate probably accounts for the sediment emplacement inside caves. In both areas the mode of emplacement implies bias in the fossil record, resulting in fossil assemblages that do not mirror surface faunas, limiting palaeoenvironmental reconstruction.

Mass spectrometric U-series analysis of speleothem calcite overlaying fossil remains gives minimum ages for fossil deposition. These ages confirm the previous view that many of the deposits derive from the late glacial, but also show that much older material (some > 350,000 yr) is also present. The habitat requirements of critical fossil species such as bats and monkeys strongly suggest that they derive from much wetter periods when forest cover was present in the currently semi-arid Northern Bahia area. Taphonomy exerts a major control on the diversity and mode of emplacement of cave fossil deposits in eastern Brazil and thus detailed sedimentological and hydrological studies coupled with a sound geochronological approach are essential in quantifying the relative importance of each taphonomic processes before faunal and palaeoecological interpretations can be attempted.     

The ‘biomineralization toolkit’ and the origin of animal skeletons

Biomineralized skeletons are widespread in animals, and their origins can be traced to the latest Ediacaran or early Cambrian fossil record, in virtually all animal groups. The origin of animal skeletons is inextricably linked with the diversification of animal body plans and the dramatic changes in ecology and geosphere–biosphere interactions across the Ediacaran–Cambrian transition. This apparent independent acquisition of skeletons across diverse animal clades has been proposed to have been driven by co‐option of a conserved ancestral genetic toolkit in different lineages at the same time. This ‘biomineralization toolkit’ hypothesis makes predictions of the early evolution of the skeleton, predictions tested herein through a critical review of the evidence from both the fossil record and development of skeletons in extant organisms. Furthermore, the distribution of skeletons is here plotted against a time‐calibrated animal phylogeny, and the nature of the deep ancestors of biomineralizing animals interpolated using ancestral state reconstruction. All these lines of evidence point towards multiple instances of the evolution of biomineralization through the co‐option of an inherited organic skeleton and genetic toolkit followed by the stepwise acquisition of more complex skeletal tissues under tighter biological control. This not only supports the ‘biomineralization toolkit’ hypothesis but also provides a model for describing the evolution of complex biological systems across the Ediacaran–Cambrian transition.     

Three new species of Peristicta Hagen in Selys (Odonata: Zygoptera: Protoneuridae) from Brazil

Three new species of Peristicta Hagen in Selys from Brazil are described and illustrated: P. janiceae from Minas Gerais State (Diamantina, Gouvêa, Lagoa Santa, Serra do Cara?a, Serra do Cipó, Urobotanga), P. jalmosi from Goiás State (Chapada dos Veadeiros, Reserva da Universidade de Brasília) and Minas Gerais State (Urobotanga, Lagoa Santa, Ponte Nova, S?o Jo?o del Rey,) and P. muzoni from Mato Grosso State (Serra da Bodoquena). An identification key for males of Peristicta is presented.     

Genetic variation in Native Americans, inferred from Latino SNP and resequencing data

Analyses of genetic polymorphism data have the potential to be highly informative about the demographic history of Native American populations, but due to a combination of historical and political factors, there are essentially no autosomal sequence polymorphism data from any Native American group. However, there are many resequencing studies involving Latinos, whose genomes contain segments inherited from their Native American ancestors. In this study, we introduce a new method for estimating local ancestry across the genomes of admixed individuals and show how this method, along with dense genotyping and targeted resequencing, can be used to assay genetic variation in ancestral Native American groups. We analyze roughly 6 Mb of resequencing data from 22 Mexican Americans to provide the first large-scale view of sequence level variation in Native Americans. We observe low levels of diversity and high levels of linkage disequilibrium in the Native American-derived sequences, consistent with a recent severe population bottleneck associated with the initial peopling of the Americas. Using two different computational approaches, one novel, we estimate that this bottleneck occurred roughly 12.5 Kya; when uncertainty in the estimation process is taken into account, our results are consistent with archeological estimates for the colonization of the Americas.     

Beringia and the global dispersal of modern humans

Until recently, the settlement of the Americas seemed largely divorced from the out‐of‐Africa dispersal of anatomically modern humans, which began at least 50,000 years ago. Native Americans were thought to represent a small subset of the Eurasian population that migrated to the Western Hemisphere less than 15,000 years ago. Archeological discoveries since 2000 reveal, however, that Homo sapiens occupied the high‐latitude region between Northeast Asia and northwest North America (that is, Beringia) before 30,000 years ago and the Last Glacial Maximum (LGM). The settlement of Beringia now appears to have been part of modern human dispersal in northern Eurasia. A 2007 model, the Beringian Standstill Hypothesis, which is based on analysis of mitochondrial DNA (mtDNA) in living people, derives Native Americans from a population that occupied Beringia during the LGM. The model suggests a parallel between ancestral Native Americans and modern human populations that retreated to refugia in other parts of the world during the arid LGM. It is supported by evidence of comparatively mild climates and rich biota in south‐central Beringia at this time (30,000‐15,000 years ago). These and other developments suggest that the settlement of the Americas may be integrated with the global dispersal of modern humans.     

A closer look at the “Protopithecus” fossil assemblages: new genus and species from Bahia,Brazil

The recently extinct large-bodied New World monkey Protopithecus brasiliensis Lund 1836 was named based on a distal humerus and proximal femur found in the Lagoa Santa cave system in the southeastern Brazilian state of Minas Gerais. These bones are from an animal about twice the size of the largest extant platyrrhines. One hundred and seventy-five years later, a nearly complete skeleton was discovered in the Toca da Boa Vista caves in the neighboring state of Bahia and was allocated to the same taxon as it was the first platyrrhine fossil of comparable size found since the originals. Our detailed study of the equivalent elements, however, reveals important morphological differences that do not correspond to intraspecific variation as we know it in related platyrrhine taxa. The presence of both an expanded brachioradialis flange on the humerus and gluteal tuberosity on the femur of the Bahian skeleton distinguishes it from the Lagoa Santa fossil as well as from all other platyrrhines. Further cranial and postcranial evidence suggests a closer relationship of the former with the alouattine Alouatta, while the limited Lund material fits more comfortably with the ateline clade. Therefore, we propose to limit P. brasiliensis Lund to the distal humerus and proximal femur from Lagoa Santa and erect a new genus and species for the skeleton from Toca da Boa Vista. Cartelles coimbrafilhoi was a large-bodied frugivore with a relatively small brain and diverse locomotor repertoire including both suspension and climbing that expands the range of platyrrhine biodiversity beyond the dimensions of the living neotropical primates.     

Paleoamerican morphology in the context of European and East Asian late Pleistocene variation: implications for human dispersion into the New World

Early American crania show a different morphological pattern from the one shared by late Native Americans. Although the origin of the diachronic morphological diversity seen on the continents is still debated, the distinct morphology of early Americans is well documented and widely dispersed. This morphology has been described extensively for South America, where larger samples are available. Here we test the hypotheses that the morphology of Early Americans results from retention of the morphological pattern of Late Pleistocene modern humans and that the occupation of the New World precedes the morphological differentiation that gave rise to recent Eurasian and American morphology. We compare Early American samples with European Upper Paleolithic skulls, the East Asian Zhoukoudian Upper Cave specimens and a series of 20 modern human reference crania. Canonical Analysis and Minimum Spanning Tree were used to assess the morphological affinities among the series, while Mantel and Dow-Cheverud tests based on Mahalanobis Squared Distances were used to test different evolutionary scenarios. Our results show strong morphological affinities among the early series irrespective of geographical origin, which together with the matrix analyses results favor the scenario of a late morphological differentiation of modern humans. We conclude that the geographic differentiation of modern human morphology is a late phenomenon that occurred after the initial settlement of the Americas.     

The biocultural evolution of Khoisan populations of Southern Africa

The research presented here offers new information on the recent evolution of Khoisan populations of southern Africa through the new study of Holocene skeletons. When combined with subfossil and historical remains, these archeological specimens provide a skeletal record for the last 5000–9000 years of southern African prehistory. Multivariate statistical analyses of cranial measurements were used to determine patterns of morphological variation in the skeletal record with which hypotheses of biocultural evolution were tested. These analyses yielded the following results. First, the traditional distinction between Bushmen and Hottentots holds for recent inland individuals. Second, there is a suggestion of a morphologically distinct San population living on the coast of South Africa. The idea of a “Strandloper” population suggested by early scholars is here revived. The third result is that there is little evidence of complete population succession on the coast of South Africa, suggesting that there were no massive population movements associated with the spread of Hottentot pastoralism throughout southern Africa.     

Early Medieval Muslim Graves in France: First Archaeological,Anthropological and Palaeogenomic Evidence

The rapid Arab-Islamic conquest during the early Middle Ages led to major political and cultural changes in the Mediterranean world. Although the early medieval Muslim presence in the Iberian Peninsula is now well documented, based in the evaluation of archeological and historical sources, the Muslim expansion in the area north of the Pyrenees has only been documented so far through textual sources or rare archaeological data. Our study provides the first archaeo-anthropological testimony of the Muslim establishment in South of France through the multidisciplinary analysis of three graves excavated at Nimes. First, we argue in favor of burials that followed Islamic rites and then note the presence of a community practicing Muslim traditions in Nimes. Second, the radiometric dates obtained from all three human skeletons (between the 7th and the 9th centuries AD) echo historical sources documenting an early Muslim presence in southern Gaul (i.e., the first half of 8th century AD). Finally, palaeogenomic analyses conducted on the human remains provide arguments in favor of a North African ancestry of the three individuals, at least considering the paternal lineages. Given all of these data, we propose that the skeletons from the Nimes burials belonged to Berbers integrated into the Umayyad army during the Arab expansion in North Africa. Our discovery not only discusses the first anthropological and genetic data concerning the Muslim occupation of the Visigothic territory of Septimania but also highlights the complexity of the relationship between the two communities during this period.     

Brief communication: Mitochondrial haplotype C4c confirmed as a founding genome in the Americas

Mitochondrial DNA analysis of 31 unrelated Shuswap speakers from a previously poorly sampled region of North America revealed two individuals with haplogroups rarely found in the Americas, C4c and C1d. Comparison of the complete genomes of the two individuals with others found in the literature confirms that C4c is a founding haplotype and gives insight into the evolution of the C1d haplotype. This study demonstrates the importance of collecting and analyzing data from Native North Americans when addressing hypotheses about the peopling of the Americas. Am J Phys Anthropol, 2010. © 2009 Wiley‐Liss, Inc.