Habitat diversity and fish assemblages in an African river basin (Nyagui River, Zimbabwe)

Little is known about the ecology of stream fishes in Zimbabwe and this study investigated fish communities in the Nyagui River basin and is one of the first to examine the relationship between fish assemblages and habitat diversity in Zimbabwe. Fourteen sampling stations were, for convenience, divided into three groups; upper (>1400 m above sea level), middle (1000–14000 m) and lower stations (<1000 m). A total of 24 species were collected, four of which were introduced, and the species composition differed according to the location of the stations. Species that favoured running water and/or rocks were generally absent from the upper stations, reflecting the fact that they were mostly sandy‐bottomed and still. Diversity and relative abundance increased in the mid‐ and low‐altitude stations, which were rockier and faster flowing. Both species diversity and relative abundance increased with the catchment area above each station, which was attributed to increased habitat diversity in larger streams. This view was supported by a strong correlation between habitat diversity and catchment area, and between habitat diversity and species richness and relative abundance. At present, the Nyagui system is relatively unregulated but the Kunzvi Dam, presently under construction, will change this situation and species diversity is likely to decrease owing to the loss of rheophilic species while other groups, notably cichlids and introduced species will increase.     

Influences of low-head dams on the fish assemblages in the headwater streams of the Qingyi watershed, China

The influences of low-head dams on the fish assemblages were examined in this study, using fish data collected in six treatment and five reference sites at three low-head dams in the headwater streams of the Qingyi watershed, China. Comparing with those in the reference sites, local habitat variables were significantly altered by low-head dams in the treatment sites, involving wider channel (only in the impoundment area), deeper water and slower flow. Fish species richness varied significantly across seasons, not across site categories, suggesting that these low-head dams did not alter species richness. However, significant decreases in fish abundance and density were observed in the impoundment areas immediately upstream of dams, but not in the plunge areas downstream. Fish assemblage structures kept relative stability across seasons, and their significant difference between-site was only observed between the impoundment areas and the sites far from dams upstream. This variation in assemblage structures was due to the differing relative abundance of some co-occurring species; more lentic but less lotic fish was observed in the impoundment areas. The spatial and temporal patterns of fish assemblages were correlated with local habitat in this study area. Wetted width had negative correlation with fish species richness, abundance and density, respectively. Water temperature also positively affected species richness. In addition, wetted width, water depth, current velocity and substrate were the important habitat variables influencing assemblage structures. Our results suggested that, by modifying local habitat characteristics, low-head dams altered fish abundance and density in the impoundment areas immediately upstream of dam, not in the plunge areas immediately downstream, and thereby influenced fish assemblage structures in these stream segments.     

Spatial and temporal variation of fish assemblages and their associations to habitat variables in a mountain stream of north Tiaoxi River,China

The spatial and temporal variations of the fish assemblages in mountain streams of China are poorly understood. The relationships between the fish assemblage and selected habitat features were examined in the North Tiaoxi River, one of headwaters of Taihu Lake. A total of 3,348 individuals belonging to 5 orders, 11 families, 25 genera and 34 species were collected including 33 native species and one invasive species. Among those, about 20 species were endemic to China. Non-metric Multidimensional Scaling (NMDS) was applied to compare fish assemblage structures from upstream to downstream during four seasons. Species assemblages differed along the stream continuum, but there was little apparent change associated with the seasons. Species richness and Shannon-Weaver index (H′) tended to increase along the stream continuum from the upstream to downstream and the proportion of invertivorous fish tended to significantly decrease along the continuum with a parallel significant increase in the percentage of omnivores. Fish assemblages were significantly related to both water quality and habitat structure variables. Canonical Correspondence Analysis ordinations (CCA) revealed that 6 of the 14 selected environmental variables had significant relationships with the fish assemblage such as distance to source, stream width, altitude, pH, water depth, and water velocity and different sampling sites were associated with different environmental variables in different seasons. The main differences in fish assemblage structure and diversity within the whole watercourse are probably related to large-scale factors such distance to source, altitude and stream width. Differences of instream characteristics are likely to be caused by natural variability of the ecosystems but also, in some case, by anthropogenic influence like human settlements, agriculture and river embankment and pollution from small factory.     

Life history and habitat preference in the Darling hardyhead,Craterocephalus amniculus (Teleostei,Atherinidae) in the northern Murray‐Darling Basin,Australia

The Darling hardyhead, Craterocephalus amniculus (Atherinidae), is a threatened fish species inhabiting upstream reaches of a number of northern Murray‐Darling Basin catchments. Little is known of its life history. Our goal was to determine patterns of seasonal size structure, interannual and spatial variation in diet, and habitat selection in this species across multiple sites and years in the upper Macintyre River, northern New South Wales. Preserved specimens from a separate study were used to obtain information on diet and size structure. Size structures suggested a single annual spawning season in late September or early October. Diets varied significantly, both between years at the downstream site and among the three sites although the underlying cause of this was untested. Dietary diversity increased with distance downstream. At the two upstream sites, aquatic invertebrates made up most of the diet while over half the gut contents at the downstream site was unidentified detritus. Preference was shown for pool habitats with a sand or cobble substrate, increased channel depth and width and distance from the bank, and reduced flow velocity. Overhanging exotic riparian vegetation and in‐stream woody debris were non‐preferred. This species may be vulnerable to further population decline in light of its restricted habitat preferences and narrow spawning season. However, comparable data from nearby catchments will be necessary to ascertain the species’ conservation status across its broader distribution.     

山地河流浅滩深潭生境大型底栖动物群落比较研究——以重庆开县东河为例

浅滩和深潭是山地河流中常见的河流生境结构。2011年7月,在重庆开县东河上游双河口-杉木桥河段,选择21个浅滩和深潭,调查大型底栖动物,研究影响不同生境中底栖动物组成、分布和多样性的生态机理。结果表明:调查河段浅滩和深潭中大型底栖动物分别为31种和24种,密度分别为450.62 个/m²和86.24 个/m²,生物量分别为2.88 g/m²和0.55 g/m²。浅滩有指示种11种,即纹石蛾(Hydropsyche sp.)、假蜉(Iron sp.)、假二翅蜉(Pseudocloeon sp.)、舌石蛾(Glossosoma sp.)、高翔蜉(Epeorus sp.1)、背刺蜉(Notacanthurus sp.)、Heterocloeon sp、锯形蜉(Serratella sp.)、朝大蚊(Antocha sp.)、等蜉(Isonychia sp.)、溪颏蜉(Rhithrogena sp.)。深潭指示种仅蜉蝣(Ephemera sp.)和黑大蚊(Hexatoma sp.)两种。刮食者为两类生境的优势功能摄食类群。浅滩中滤食者和刮食者比例显著高于深潭,而收集者和捕食者显著低于深潭。两类生境中大型底栖动物群落结构差异显著。浅滩中大型底栖动物的密度、生物量、丰富度指数、Shannon-Wiener 指数、改进的Shannon-Wiener指数均明显高于深潭。受地貌形态、水力特征和冲淤变化规律影响的生境稳定性和异质性差异是导致大型底栖动物群落差异的主要原因。     

Fish metacommunity responses to experimental drought are determined by habitat heterogeneity and connectivity

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Seasonal changes in fish community structure of intermittent streams in the middle reaches of the Guadiana basin, Portugal

Seven sites on three tributaries with intermittent flow regimes in the middle reaches of the Guadiana, i.e. Xévora, Caia and Degebe, were sampled approximately every 3 months from April 1995 to April 1997. The density and biomass of fish were greater in downstream rivers and sites. Along the Xévora River, a series of point abundance samples showed evidence of fish zonation along the river. Canonical correspondence analysis (CCA) suggested a simple relationship between the different species and their preferred habitat. The small-sized Rutilus alburnoides and Leuciscus pyrenaicus used most or all of the habitats with some cover and flowing water. Greater concentrations of larger fish were found in downstream reaches which generally had greater depths as stream width increased: large Barbus microcephalus , B. steindachneri and B. comiza preferred such sites on the Degebe River. Droughts in seasonal Mediterranean streams such as the Guadiana River are a predictable natural disturbance. In the summer, flow ceases and some stretches of river consist of isolated pools. This results in intense aggregations of fish and possible competition for food and/or space. Although some species are well adapted to natural droughts, habitat degradation and possibly the introduction of exotic species contribute to marked variability in species composition.     

溪流大小及其空间位置对鱼类群落结构的影响

2008年10月和2009年10月分别对黄山地区阊江流域与青弋江流域1-3级浅水溪流中鱼类群落结构进行了研究,着重探讨了溪流大小及其空间位置对鱼类群落空间分布的影响。研究共捕获35种鱼类,阊江和青弋江分别为26和29种,其Jaccard相似性系数为57.1%;两流域间每样点的物种数差异显著,个体数差异极显著。在溪流级别梯度(1-3级)下,鱼类的物种数和个体数都呈上升的变动趋势,且物种数的变化相对个体数较显著。综合相关分析、逐步多元回归分析与典范相关分析的结果,阊江和青弋江中鱼类物种数的空间变化主要与下游量级相关,而个体数的空间变化主要与水宽相关。因此,阊江和青弋江1-3级浅水溪流中鱼类群落结构的空间分布格局是溪流大小和空间位置的共同作用结果,且溪流大小和空间位置分别决定鱼类的个体数与物种数的空间分布。       

Increasing fish taxonomic and functional richness affects ecosystem properties of small headwater prairie streams

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Individual variation in habitat use and growth of male and female brown trout

We examined variation in growth and habitat use of individually PIT‐tagged brown trout Salmo trutta in three stream enclosures, each divided into a fine substrate, deep pool habitat and a coarse substrate, shallow habitat. Habitat use and movements of individual fish were monitored continually by placing PIT detectors between habitats. All fish were measured and weighed biweekly over a three month period. There was no significant relationship between habitat use and initial body size, nor was there a consistent relationship between habitat use and densities of benthic macroinvertebrates or abundance of drifting invertebrates in the two habitats. Most habitat changes occurred at night, with activity peaks just prior to sunrise and after sunset. Trout used pools more at night than during the day. Within any given day, diurnal and nocturnal habitat use of individual fish varied little, with variation greater at night than during the day. Partial habitat segregation by sex was observed; only males used pools extensively during daytime, whereas males and females used riffles.
Growth rate was positively related to use of pools during daytime but not at night. Growth rate was also affected by enclosure, with growth rates being highest in the most downstream enclosure, which had the deepest pool (mean of 42 cm) and lowest in the most upstream enclosure, which had the shallowest pool (mean of 28 cm). A complete exchange of trout between the most upstream and downstream enclosure indicated that the enclosure effect was due to physical differences and not to individual fish differences between enclosures. The effect appears to have been caused by differences in depth as daytime use of pools was correlated with the area of the pool ≥35 cm deep, and production of trout biomass per enclosure was directly related to mean pool depth. Our results suggest that there is a relationship between habitat use and growth of individuals that is independent of body size, but that this relationship is influenced by sex of the fish and by the physical characteristics of the environment. Further, the data indicate that short‐term behavioral decisions on habitat use by brown trout have a potential effect on longer‐term individual fitness through growth rates.     

Comparisons of benthic invertebrates between riffles and pools

Benthic species assemblages in upstream and downstream ends of riffles and in pools were investigated seasonally in the first five orders of an alluvial gravel stream with distinct pool and riffle channel form. Riffles comprised < 10% of stream area and were separated by pools with extensive bedrock substrate (ca. 15–85% of total surface area) which was scoured during periodic high flow. Virtually all taxa were more abundant in riffles than in pools, except chironomids which were more equally distributed. Inconsistent results were obtained for upstream-downstream comparisons within riffles. Intermittent headwater reaches (orders 1 & 2) which supported half as many taxa retained this pattern during periods of flow, although riffles at these sites were dry from mid-June to mid-November. Pools which contained more gravel, indicating less disturbance during high flow, had a richer assemblage of benthic species than other pools. Many invertebrates in pools may have been there as a result of drift from their preferred riffle habitats, but the presence of gravel in the pools indicates less intense flow disturbance during floods, provides protection from the mild scouring that does occur during floods, and provides refugia from predators.     

Responses of Fish to Experimental Introduction of Structural Woody Habitat in Riffles and Pools

The declining condition of river systems associated with rapid development of human societies has led to substantial declines in fish diversity. One cause of decline is the loss of in‐stream Structural Woody Habitat (SWH), an important component of stream ecosystems, particularly as fish habitat. As a result there has been an increase in the number of rehabilitation programs that introduce SWH into rivers. This paper assesses fish responses to SWH introduction in riffles and pools in the Hunter River, eastern Australia, using a Multiple‐Before‐After‐Control‐Impact (MBACI) experimental and analytical design. In the riffle experiment, species richness was comparable among all control and treatment riffles across the entire study period. However, there were significant differences in assemblage structure, fish abundance, and biomass between control and treated riffles. The introduction of SWH (bank embedded deflector jams) appeared to create additional habitat which was utilized by one native fish species (Retropinna semoni—Australian smelt) and one alien species (Gambusia holbrooki—mosquito fish). In pools there were no significant changes in fish species richness, abundance, or biomass following introduction of SWH (pool jams). These findings have important practical and cost implications in terms of the design and implementation of rehabilitation strategies using SWH to restore fish assemblages in degraded streams.     

Comparison of allopatric cutthroat trout stocks with those sympatric with coho salmon and sculpins in small streams

Synopsis Juvenile stocks of allopatric (upstream of barrier falls) cutthroat troutSalmo clarki and those sympatric (downstream of barrier falls) with coho salmonOncorhynchus kisutch and sculpinsCottus spp., were sampled during the late summer period of low flows in six small coastal streams in British Columbia. The objective was to obtain and compare information on pattern of habitat use and fish size distribution of these two trout types. In most instances, density (n m^–2; g m^–2) of cutthroat trout was considerably greater in pools and glides in the allopatric than in the sympatric stocks. The sympatric salmonids were dominated by juvenile coho salmon in pools and cutthroat trout in riffles. Sympatric cutthroat trout constituted from 7 to 45 % of the salmonids present in pools and from 50 to 90% in riffles. Glides were areas of intermediate densities for both salmonids, although coho salmon was the more abundant species in most instances. The density of sculpins was high in all three habitat types, and frequently it exceeded that of coho salmon and cutthroat trout combined. Sympatric cutthroat trout consisted primarily of underyearling fish, whereas allopatric cutthroat trout consisted primarily of two or more age classes with a large proportion of them living in pools. When tested in a laboratory stream both types of cutthroat trout had similar habitat preferences and agonistic behaviours, with the exception that allopatric trout made greater use of cover and defended pools more intensely than sympatric trout when the flow was increased. The results of this study provide insight of potential impact of coho salmon juvenile transplants into stream segments supporting allopatric cutthroat trout.     

Effects of longitudinal variations in stream habitat structure on fish abundance: an analysis based on subunit-scale habitat classification

SUMMARY 1. Stream reaches contain assortments of various habitat types that can be defined at different spatial scales, such as channel unit (e.g. pools, riffles) and subunit (patches within channel units). We described longitudinal (upstream–downstream) patterns of stream habitat structure by considering subunits as structural elements, and examined their effects on the abundance of masu salmon ( Oncorhynchus masou ) and rosyface dace ( Leuciscus ezoe ) in a third-order tributary of the Teshio River in northern Hokkaido, Japan.
2. Nine subunit types were determined on the basis of water depth, current velocity and substrate, using 0.5 × 0.5 m grids. Although both masu salmon and rosyface dace used pools as a major habitat, the former preferred a subunit type occurring at pool heads (PH subunit) while the latter preferred a slow-current edge type (SE-2 subunit).
3. Along the course of the stream, slow-edge subunits (SE-1, 2 and 3) increased in frequency downstream while fast-edge subunits (FE-1 and 2) decreased, suggesting a downstream development of slow-current edges. Regression analyses indicated that longitudinal variation in masu salmon abundance was explained by the area of PH, rather than pools. Masu salmon density increased with the area of PH. Rosyface dace abundance was explained by a combination of water depth and the area of SE-2, both effects being positive.
4. Longitudinal variations in the abundance of both species were related to the abundance of their preferred habitat at the subunit scale, rather than channel-unit scale. The results emphasise the importance of fine-scale patchiness when examining stream fish habitats.     

Genetic structure of a native cyprinid in a reservoir‐altered stream network

1. Reservoirs modify riverine ecosystems worldwide, and often with deleterious impacts on native biota. The immediate effects of reservoirs on native fish species below dams and in impounded reaches have received considerable attention, but it is unclear how reservoirs may affect fish species at larger spatial and temporal scales. Documented declines of stream fish populations in direct tributaries of reservoirs suggest reservoir pools may reduce gene flow among historically connected populations. 2. Because of increased predator densities in reservoirs and the extent of habitat alteration in impounded reaches, I predicted reservoir habitats would reduce gene flow among small‐bodied fish populations separated by reservoir habitat. I used microsatellite markers to assess the spatial genetic structure of populations of the red shiner (Cyprinella lutrensis), in a reservoir‐fragmented stream network (Lake Texoma, U.S.A.). I also tested the prediction that populations in two direct tributaries that have experienced population declines would have low genetic diversity. Individuals were collected from six sites upstream of the reservoir, three sites in the reservoir and three sites in direct tributaries of the reservoir during 2008 and 2009. 3. Results indicate that most populations were isolated by distance with little divergence among populations. In one direct tributary population, however, there was substantial genetic divergence, and genetic diversity was significantly lower than in other populations. Gene flow also seemed to be lower in reservoir habitats than in intact stream habitats, suggesting reservoir habitats may be reducing gene flow among the reservoir‐separated populations. These results indicate that reservoirs may reduce gene flow among reservoir‐fragmented stream fish populations, altering the evolutionary trajectories of fragmented populations.     

Contrasted impacts of climate change on stream fish assemblages along an environmental gradient

Aim To investigate the potential impacts of climate change on stream fish assemblages in terms of species and biological trait diversity, composition and similarity. Location One‐thousand one‐hundred and ten stream sections in France. Methods We predicted the future potential distribution of 35 common stream fish species facing changes in temperature and precipitation regime. Seven different species distribution models were applied and a consensus forecast was produced to limit uncertainty between single‐models. The potential impacts of climate change on fish assemblages were assessed using both species and biological trait approaches. We then addressed the spatial distribution of potential impacts along the upstream–downstream gradient. Results Overall, climate change was predicted to result in an increase in species and trait diversity. Species and trait composition of the fish assemblages were also projected to be highly modified. Changes in assemblages’ diversity and composition differed strongly along the upstream–downstream gradient, with upstream and midstream assemblages more modified than downstream assemblages. We also predicted a global increase in species and trait similarity between pairwise assemblages indicating a future species and trait homogenization of fish assemblages. Nevertheless, we found that upstream assemblages would differentiate, whereas midstream and downstream assemblages would homogenize. Our results suggested that colonization could be the main driver of the predicted homogenization, while local extinctions could result in assemblage differentiation. Main conclusions This study demonstrated that climate change could lead to contrasted impacts on fish assemblage structure and diversity depending on the position along the upstream–downstream gradient. These results could have important implications in terms of ecosystem monitoring as they could be useful in establishing areas that would need conservation prioritization.     

DNA barcoding and evaluation of genetic diversity in Cyprinidae fish in the midstream of the Yangtze River

The Yangtze River is the longest river in China and is divided into upstream and mid‐downstream regions by the Three Gorges (the natural barriers of the Yangtze River), resulting in a complex distribution of fish. Dramatic changes to habitat environments may ultimately threaten fish survival; thus, it is necessary to evaluate the genetic diversity and propose protective measures. Species identification is the most significant task in many fields of biological research and in conservation efforts. DNA barcoding, which constitutes the analysis of a short fragment of the mitochondrial cytochrome c oxidase subunit I (COI) sequence, has been widely used for species identification. In this study, we collected 561 COI barcode sequences from 35 fish from the midstream of the Yangtze River. The intraspecific distances of all species were below 2% (with the exception of Acheilognathus macropterus and Hemibarbus maculatus). Nevertheless, all species could be unambiguously identified from the trees, barcoding gaps and taxonomic resolution ratio values. Furthermore, the COI barcode diversity was found to be low (≤0.5%), with the exception of H. maculatus (0.87%), A. macropterus (2.02%) and Saurogobio dabryi (0.82%). No or few shared haplotypes were detected between the upstream and downstream populations for ten species with overall nucleotide diversities greater than 0.00%, which indicated the likelihood of significant population genetic structuring. Our analyses indicated that DNA barcoding is an effective tool for the identification of cyprinidae fish in the midstream of the Yangtze River. It is vital that some protective measures be taken immediately because of the low COI barcode diversity.     

The effect of long pools on the drift of macro-invertebrates in a mountain stream

Macro-invertebrate drift was measured entering and leaving two pools on the Middle Fork of the Cosumnes River, a third order California stream. Drift rates for Baetis spp., Chironomidae, Simulium spp., Capniidae and total drift were calculated. Significant differences in the numbers of organisms entering the two pools were found for Baetis, Chironomidae, and Capniidae. Comparisons of drift rates at the upstream and downstream ends of each pool showed that the abundance of Chironomidae, Simulium, Capniidae and total drift changed in different directions across the pools. The numbers of organisms leaving the two pools, however, were not significantly different for Baetis, Simulium, Capniidae and total drift. These findings lead us to hypothesize that long pools act as barriers, not filters, to stream macro-invertebrate drift. The composition of drift leaving the pools in this experiment appeared to be controlled by the composition of the benthic habitat at the tail of the pool and not by the composition of upstream drift entering the pools.     

The effects of intra- and inter-specific competition on the distribution of stocked juvenile Atlantic salmon, Salmo salar L., in relation to depth and gradient in an upland trout, Salmo trutta L., stream

The relative effects of inter- and intra-specific competition on the distribution of stocked salmon in relation to depth and gradient were investigated in an upland stream during two summer sampling periods. The stream was divided into two areas by an impassable fish barrier, and trout were removed from the upstream section prior to 2 years of salmon stocking. A small amount of trout re-immigration to the cleared area occurred. Under sympatric conditions in the downstream section the fry of both species were significantly more abundant in shallow water, whereas the yearling and older fish tended to inhabit the deeper, slow-flowing areas. Under near allopatric conditions in the cleared section salmon fry changed their distribution to include deeper areas, with shallow, fast-flowing water becoming the least preferred habitat. This trend for a wide distribution of salmon fry over all the available habitat in the upstream section was maintained in the second year when parr were present but trout remained at very low densities. It was therefore concluded that high inter-specific competition from trout was responsible for restricting the distribution of salmon fry to shallow habitat in the control area. Intra-specific competition from older salmon apparently only affected the growth and survival of salmon fry. The regulating mechanisms involved in these inter- and intra-specific effects are discussed in terms of competition for stream resources and predation. Recommendations based on the findings are made for stocking and habitat management of salmonid waters.     

Influence of habitat dynamics on the distribution and abundance of the federally threatened Santa Ana Sucker, <Emphasis Type="Italic">Catostomus santaanae</Emphasis>, in the Santa Ana River

Habitat degradation affects native stream fish populations worldwide. We examined the impact of fluctuation in environmental variables on the population dynamics of the federally threatened Santa Ana sucker, Catostomus santaanae, in the Santa Ana River, California through: 1) annual quantitative surveys of C. santaanae abundance and habitat at three 100-m sites between 2001 and 2008 and 2) annual surveys of habitat composition within a 30-km stretch of the Santa Ana River between 2006 and 2008. We used Akaike’s Information Criterion (AIC) to evaluate competing models that used environmental variables to explain variation in C. santaanae abundance among sites and years. The most plausible model identified a positive relationship between C. santaanae abundance and both the amount of coarse substrate (i.e., gravel and cobble) and rate of discharge among site-years. Surveys at the 30-km scale indicated that the prevalence of coarse substrate declined in a downstream direction in each year and that the total amount of this habitat type varied annually. Specifically, cobble/gravel habitat was mostly confined to the upstream 4 km, 9.6 km, and 5.1 km of the survey area in 2006, 2007, and 2008, respectively. Fine sediment comprised the bulk of downstream habitat every year. This large-scale flux in the distribution of coarse sediment likely has a large effect on the population dynamics of C. santaanae in the Santa Ana River. Our results underscore the need to maintain and enhance suitable C. santaanae habitat to ensure its long-term persistence in the Santa Ana River.