Evaluation of old Carpathian apple cultivars as genetic resources of resistance to fire blight (Erwinia amylovora)

In the interests of re-diversifying cultivar use in apple, one of the most important breeding aims, apart from using local cultivars in breeding, is to improve resistance to fire blight (FB). At the Corvinus University of Budapest, the investigation of Hungarian cultivars found in the Carpathian Basin as genetic resources is a major part of the apple breeding program aimed at multiple resistance. The present study, initiated in the early 2000s, evaluates the FB resistance of 31 apple cultivars. Examination of the damage to shoots and flowers, and of the correlation between them, was carried out after artificial inoculation. Two dominant SCAR markers and one SSR marker were used for the genetic analysis of the cultivars giving the best results in phenotypic analysis, in order to detect quantitative trait locus alleles coding for FB resistance. Based on the results of several years of inoculation tests, the assayed cultivars exhibited a wide range of susceptibility levels on the basis of shoot necrosis and in terms of flower damage. A positive correlation (R = 0.058, p = 0.04) was demonstrated between the susceptibility found for the two plant organs. The cultivars Szabadkai szercsika and Sikulai, which gave outstanding results both in the flower and shoot tests and in the genetic analysis, could be suitable genetic resources for resistance breeding programmes. The present work confirmed the complex polygenic nature of FB resistance and the need to identify further markers in addition to those found on linkage group (LG) 3 and LG 7.     

Placebo controls: historical, methodological and general aspects

Control conditions were introduced through the trial of Mesmerism in Paris. Placebo controls became codified standard in 1946. Although seemingly unchallenged, there are various problems with this received view. The notion of a placebo is only defined from the negative. A positive notion proposed that placebo effects are effects owing to the meaning an intervention has for an individual. Thus, placebo effects are individualized, whereas standard research paradigms reveal only grossly averaged behaviour. Also, placebo effects are context sensitive, dependent on psychological factors such as expectancy, relief of stress and anxiety, and hence can generate strong and long-lasting treatment effects. These, however, are not predictable. Such a situation can lead to the efficacy paradox: sometimes, sham interventions can be more powerful than proved, evidence-based treatments. This situation has methodological consequences. Placebo-controlled randomized trials reveal only part of the answer, whether an intervention is effective. This is valuable information for regulators, but not necessarily also for patients and of limited value for providers. Hence, I have argued that we need to complement the hierarchical model of evidence by a circular one, in which various methods are employed on equal footing to answer different questions.     

The value of the archaeobotanical analysis of desiccated plant remains from old buildings: methodological aspects and interpretation of crop weed assemblages

Plant material like threshing remains has been used systematically as filling and insulation material in buildings for a long time. Such plant material can be found in several places, for example in floor cavities (internal floor deposits, Fehlböden) or in beam holes. For the first time in Switzerland, desiccated plant material like this has been investigated. In this article the analysis of the material from three different sites is presented, each dated to a different period, from the late medieval period to the time just before the industrial revolution. The samples consisted of chaff from Triticum spelta in bulk, and smaller amounts of other cereals such as T. monococcum, Avena sativa, Panicum miliaceum and Secale cereale, plus various weeds. The assemblages in the late medieval samples show evidence of three-field rotation: the high percentage of grassland species is interpreted as an indicator of the fallow land phase within the three-field system. A higher ratio of annual to perennial plants in the more modern samples indicates the development of more intensive tillage and cultivation. Methodological questions regarding sampling strategies of the floor cavity subsamples are investigated. The analyses suggest that the volume of these subsamples should be more than two litres.     

Genotyping of pedigreed apple breeding material with a genome-covering set of SSRs: trueness-to-type of cultivars and their parentages

Apple cultivars and breeding lines that represent much of the diversity currently present in major European breeding programmes and are genetically related by their pedigree were examined for the trueness of their identity and parentage by consistency in marker scores using a genome-covering set of 80 microsatellite (SSR) markers and an ??identity-by-descent?? approach. One hundred and twenty-five individuals were validated for the trueness-to-type of both their parents and 49 were validated for one of their parents, their second being unknown (23 individuals) or not available in this study (26 individuals). In addition, 15 individuals for which we lacked one of or both the direct parents were validated by consistency with tested parents of earlier generations. Furthermore, the identity of 28 founder cultivars was validated, their marker scores being consistent with descending cultivars and breeding lines. Four of the eight triploids identified were clearly shown to have arisen from unreduced egg cells. The assumed pedigree of 15 further individuals was found to be incorrect; fully consistent pedigrees were suggested for three of the cultivars. The pedigrees of a further eight individuals were confirmed through inference from the molecular data.     

Plant regeneration from Citrus protoplasts: Variability in methodological requirements among cultivars and species

Summary Nucellar callus lines were established from two orange cultivars (Nucellar Shamouti, Shamouti Landau), three mandarin cultivars (Murcott, Dancy, Ponkan) one grapefruit cultivar (Duncan) and sour orange (Citrus aurantium). These callus lines were initiated from in vitro cultured ovules of young fruits and maintained an embryogenic capacity. The plating efficiencies of protoplasts derived from these calli, as well as those of protoplasts from lemon (cv. Villafranca) nucellar callus were differentially affected by the maceration enzymes and by the sugars used as osmotic stabilizers. Plants with normal morphological features were regenerated from cultured protoplasts derived from each of the nucellar callus lines. The establishment of eight new protoplast systems in Citrus paves the way for cell genetics studies and for novel breeding approaches in these economically important orchard trees.Contribution from the Agricultural Research Organization, The Volcani Center, Bet Dagan, Israel. No. E-290, 1981 series     

Mapping the bovine genome: methodological aspects and strategy*

Summary
The mapping of genes that control traits of economic importance will ultimately lead to the unravelling of the molecular basis of genetic variation. The main prerequisite for mapping of the unknown genes is a sufficient number of highly polymorphic marker loci which are evenly distributed along the chromosomes. The establishment of such a marker map in cattle and other species is based on methods used in human gene mapping. Comparative mapping facilitates saturation of the chromosomes with markers by utilizing the high degree of conservation of synteny among mammalian species. Comparative mapping will also allow access to the detailed mapping data and to extensive sequence information expected from the human genome initiative.     

S-RNases from self-incompatible and -compatible apple cultivars: purification,cloning, enzymic properties,and pollen tube growth inhibitory activity

Four S-RNases (RNase associated with self-incompatibility) were purified from the styles of two apple cultivars (Malus domestica), a self-incompatible cv., Starking Delicious (SD), and a self-compatible cv., Megumi (MG). Each cultivar produced two S-RNases and their enzymatic properties such as specific activity, pH optimum, thermal stability, and molecular mass, were characterized. The four S-RNases inhibited the tube growth of apple pollen in an in vitro bioassay at 25 microg/ml (1.0 microM), but did not distinguish self from non-self pollen. The cDNAs of four S-RNases were cloned, and the nucleotide and deduced amino acid sequences were analyzed. The nucleotide sequence of SD-Se RNase was a new one and the other was identical to that of Sc-RNase of cv. Fuji. In MG one was identical to the sequence of SD-Sc RNase and the other to that of Sa-RNase of cv. Golden Delicious except for one base. From results of the isolation amounts and the Western blot analysis for stylar crude extracts the amount of S-RNases in MG was apparently less than that in SD.     

Ecological and evolutionary aspects of isoprene emission from plants

Isoprene (2-methyl-1,3,-butadiene), produced by many woody and a few herbaceous plant species, is the dominant volatile organic compound released from vegetation. It represents a non-trivial carbon loss to the plant (typically 0.5–2%, but much higher as temperatures exceed 30°C), and plays a major role in tropospheric chemistry of forested regions, contributing to ozone formation. This review summarizes current knowledge concerning the occurrence of isoprene production within the plant kingdom, and discusses other aspects of isoprene biology which may be of interest to the ecological community. The ability to produce significant amounts of isoprene may or may not be shared by members of the same plant family or genus, but emitting species have been found among bryophytes, ferns, conifers and Ephedra and in approximately one-third of the 122 angiosperm families examined. No phylogenetic pattern is obvious among the angiosperms, with the trait widely scattered and present (and absent) in both primitive and derived taxa, although confined largely to woody species. Isoprene is not stored within the leaf, and plays no known ecological role as, for example, an anti-herbivore or allelopathic agent. The primary short-term controls over isoprene production are light and temperature. Growth in high light stimulates isoprene production, and growth in cool conditions apparently inhibits isoprene, production of which may be induced upon transfer to warmer temperatures. The stimulation of isoprene production by high irradiance and warm temperatures suggests a possible role in ameliorating stresses associated with warm, high-light environments, a role consistent with physiological evidence indicating a role in thermal protection. Received: 1 April 1998 / Accepted: 9 November 1998     

Rooting apple cultivars in vitro: Interactions among light,temperature, phloroglucinol and auxin

Delicious apple (Malus domestica Borkh.) and several of its strains, which have been difficult to root in vitro, were successfully propagated with rooting percentages up to 100%. The combination of treatments used to achieve this result included placing the shoots on rooting medium in the dark at 30°C for the first week of the rooting stage, then moving them to a regime of 16 hr light-8 hr dark at 25°C. The rooting medium contained half strength Murashige and Skoog salts plus 1.2 M thiamine HCl, 0.56 mM myo-inositol, 1 mM phloroglucinol (PG), 1.4 M indolebutyric acid (IBA), 1.3 M gibberellic acid (GA₃), 87.6 mM sucrose, and 7 g l^–1 Difco Bacto agar. Dark treatment applied during the proliferation stage (etiolation) was less effective than one applied at the beginning of the rooting stage. The optimum length of dark treatment during rooting was 4 to 7 days. Increasing the temperature from 25°C to 30°C improved rooting of Delicious, Royal Red Delicious, and Vermont Spur Delicious in the absence of PG but generally had less effect in the presence of PG. Further increase in temperature to 35°C stimulated rooting of Royal Red Delicious but reduced rooting of Vermont Spur Delicious. Transfer of the cuttings to auxin-free medium after 1 week had no effect on percentage rooting and increased the number of roots per cutting for only 1 of 4 cultivars tested and then only in the presence of PG. In general PG stimulated rooting of Delicious and its strains, but had no effect on Golden Delicious.     

Homochirality and stereospecific activity: evolutionary aspects

The problem discussed in this paper is the connection between the unique property of biopolymers (proteins, DNA and RNA), i.e. homochirality, and their main functional property, i.e. self-replication. Our approach is based on an analysis of the conditions for the origination of the mechanism of self-replication of chiral polymers. It is demonstrated that self-replication could originate only on the basis of homochiral structures, possessing stereospecific (enzymatic) activity. It is also shown that complete breaking of the mirror symmetry of the organic medium is required both at the stage of polymeric takeover and at the stage of formation of structures possessing stereospecific activity. This requirement is satisfied only in the framework of the mechanism of spontaneous symmetry breaking i.e. the mechanism of non-equilibrium phase transition from the racemic state of the organic medium to the chirally pure one. The results obtained suggest that homochirality is a necessary condition for the origination of biological specificity and plays a fundamental role in the formation of structures capable of self-replication.     

Enzyme promiscuity: evolutionary and mechanistic aspects

The past few years have seen significant advances in research related to the 'latent skills' of enzymes - namely, their capacity to promiscuously catalyze reactions other than the ones they evolved for. These advances regard (i) the mechanism of catalytic promiscuity - how enzymes, that generally exert exquisite specificity, promiscuously catalyze other, and sometimes barely related, reactions; (ii) the evolvability of promiscuous functions - namely, how latent activities evolve further, and in particular, how promiscuous activities can firstly evolve without severely compromising the original activity. These findings have interesting implications on our understanding of how new enzymes evolve. They support the key role of catalytic promiscuity in the natural history of enzymes, and suggest that today's enzymes diverged from ancestral proteins catalyzing a whole range of activities at low levels, to create families and superfamilies of potent and highly specialized enzymes.     

Longevity and ageing: appraising the evolutionary consequences of growing old

Senescence or ageing is an increase in mortality and/or decline in fertility with increasing age. Evolutionary theories predict that ageing or longevity evolves in response to patterns of extrinsic mortality or intrinsic damage. If ageing is viewed as the outcome of the processes of behaviour, growth and reproduction then it should be possible to predict mortality rate. Recent developments have shown that it is now possible to integrate these ecological and physiological processes and predict the shape of mortality trajectories. By drawing on the key exciting developments in the cellular, physiological and ecological process of longevity the evolutionary consequences of ageing are reviewed. In presenting these ideas an evolutionary demographic framework is used to argue how trade-offs in life-history strategies are important in the maintenance of variation in longevity within and between species. Evolutionary processes associated with longevity have an important role in explaining levels of biological diversity and speciation. In particular, the effects of life-history trait trade-offs in maintaining and promoting species diversity are explored. Such trade-offs can alleviate the effects of intense competition between species and promote species coexistence and diversification. These results have important implications for understanding a number of core ecological processes such as how species are divided among niches, how closely related species co-occur and the rules by which species assemble into food-webs. Theoretical work reveals that the proximate physiological processes are as important as the ecological factors in explaining the variation in the evolution of longevity. Possible future research challenges integrating work on the evolution and mechanisms of growing old are briefly discussed.     

Alcohol dehydrogenase from Drosophila funebris and Drosophila immigrans: Molecular and evolutionary aspects

Alcohol dehydrogenase from Drosophila funebris and D. immigrans is evident at all developmental stages. The highest activity level appears in third-instar larvae and declines to a lower level at all later stages of development. Both species are monomorphic. The enzyme is a dimer consisting of two identical subunits with molecular weight 27,600. The pI values are 8.6 for D. funebris and 9.02 for D. immigrans. The optimum pH is 8.6 and 8.7 for D. funebris and D. immigrans, respectively. The Km values for NAD+, propan-2-ol, and butan-2-ol are 0.15, 2.90, and 2.08 mM, respectively, for D. funebris and 0.16, 1.53, and 1.49 mM, respectively, for D. immigrans. The half-life for the purified enzyme is 45 days for D. funebris and 18 days for D. immigrans at 4 degrees C. Data on the amino acid composition of both enzymes and peptide maps of alcohol dehydrogenase of D. immigrans reveal that they have marked homologies between them and also with alcohol dehydrogenases of other species. D. funebris shows reduced levels of alcohol dehydrogenase synthesis but has the highest specific activity reported to date for a Drosophila species. D. immigrans synthesises six times more enzyme but the specific activity is comparable to that of other species of Drosophila. This evidence could explain their different alcohol tolerance. The molecular properties of these alcohol dehydrogenases together with other species of Drosophila suggest that the alcohol dehydrogenase of Drosophila has arisen by divergent evolution from a common ancestral gene.     

Ecological aspects of the evolutionary processes

Darwin in his On the Origin of species made it clear that evolutionary change depends on the combined action of two different causes, the first being the origin of genetically based phenotypic variation in the individual organisms comprising the population and the second being the action of selective agents of the external environment placing demands on the individual organisms. For over a century following Darwin, most evolutionists focused on the origin of inherited variation and its transmission; many workers continue to regard genetics to be the core of evolutionary theory. Far less attention has been given to the exact nature of the selective agents with most evolutionists still treating this cause imprecisely to the detriment of our understanding of both nomological and historical evolutionary theory. Darwin was vague in the meaning of his new concept of "Natural Selection," using it interchangeably as one of the causes for evolutionary change and as the final outcome (= evolutionary change). In 1930, natural selection was defined clearly as "non-random, differential reproduction of genes" by R. Fisher and J.B.S. Haldane which is a statement of the outcome of evolutionary process and which omits mention of the causes bringing about this change. Evolutionists quickly accepted this outcome definition of natural selection, and have used interchangeably selection both as a cause and as the result of evolutionary change, causing great confusion. Herein, the details will be discussed of how the external environment (i.e., the environment-phenotype interaction) serves as selective agents and exerts demands on the phenotypic organisms. Included are the concepts of fitness and of the components of fitness (= adaptations) which are respectively (a) survival, (b) direct reproductive and (c) indirect reproductive features. Finally, it will be argued that historical-narrative analyses of organisms, including classification and phylogenetic history, are possible only with a full understanding of nomological evolutionary theory and with functional/adaptive studies of the employed taxonomic features in addition to the standard comparative investigations.     

Distribution and ecological preferences of noble crayfish in the Carpathian Danube basin: biogeographical insights into the species history

Widespread across Europe, the noble crayfish Astacus astacus has experienced many negative ecological and anthropogenic influences, mostly in western and northern Europe. We address the distribution and ecological affinities of this species in the geographical context of the Carpathian Danube basin, an area where these influences were limited and the distribution picture is expectedly a natural one. The main statistical method used to reveal the environmental factors that influence the distribution of noble crayfish was boosted regression trees. Crayfish presence was found to be favoured by a combination of a high percentage of riverbank tree coverage, moderate altitude and slow water velocity, to the detriment of dissolved oxygen. These results reveal the species requirements for river sectors offering the best long-term stability. An eastwards decrease in the probability of occurrence of noble crayfish populations was observed along the Danube tributaries. We hypothesise that this pattern is given by the early colonisation routes originating from southern Danube tributaries, after the Pleistocene glaciations. Including spatiality along with ecological data in the statistical models, this study comes to support the fact that a comprehensive approach can provide a better understanding of a species distribution pattern.