Decision support based automatic container sequencing system using heuristic rules

Container terminals in seaports constitute interfaces between the seaborne transport and transport-over-land of goods in global transport chains. The loading and unloading of containers are performed using quay cranes (QCs), which is the most important equipment for handling servicing vessels at a container terminal. Following tremendous growth in global container transshipments, terminals are facing increasing demand. Terminals at Shanghai are equipped with Tandem Lift which can lift two 40’ containers simultaneously to improve the efficiency of the QCs. A reasonable container combinations of Tandem Lift and container operation sequence are required to improve the servicing of vessels, meanwhile the dual cycling container operation of quay cranes has to be investigated. This paper presents a two-stage mathematical model and two-level heuristic algorithm for planning the container operation sequence using Tandem Lift in a feasible computational time. Based on the proposed methodology, a decision support system, called the Tandem Lift Container Sequence System (TLCSS). A case study of Shanghai Shengdong International Port Company (SSICT) proves that consideration of the container sequence with Tandem Lift dramatically shortens servicing time of vessels with the TLCSS.     

A review of 16 years of quality control parameters at a mass‐rearing facility producing Queensland fruit fly,Bactrocera tryoni

From 1996 to 2012, the mass‐rearing facility at Camden (NSW, Australia) has been producing Queensland fruit flies, Bactrocera tryoni (Froggatt) (Diptera: Tephritidae). During this time, the facility has regularly recorded fly quality parameters, creating a unique data set that provides an invaluable opportunity to evaluate the interrelationships among standard quality control (QC) parameters and test for redundant QC variables. Here, we conducted an exploratory data analysis to reveal relationships among the QC parameters. We found that pupal weight, adult lifespan, and longevity under nutritional stress (i.e., survival duration without food or water) had distinct monthly trends, suggesting that these QC parameters are sensitive to seasonal conditions. Furthermore, emergence percentage, flight ability, and adult lifespan were adversely affected by the dyeing/handling/irradiation process associated with sterile insect releases. Using a multivariate approach and controlling for monthly and yearly patterns, we showed that pupal weight and egg hatch are consistently negatively related and that percentage male and emergence rates are consistently negatively related. These results suggest that these correlation pairs measure similar quality information and hence one QC variable from each pair could be dropped. Flight ability was not strongly correlated with any of the QC variables, suggesting that this QC variable remains a useful QC metric. Finally, the longevity under nutritional stress QC appears to be fairly insensitive to QCs and we suggest that it should be replaced by the standard mortality under stress test.     

A Unique Carboxylic-Acid Hydrogen-Bond Network (CAHBN) Confers Glutaminyl Cyclase Activity on M28 Family Enzymes

Proteins with sequence or structure similar to those of di-Zn exopeptidases are usually classified as the M28-family enzymes, including the mammalian-type glutaminyl cyclases (QCs). QC catalyzes protein N-terminal pyroglutamate formation, a posttranslational modification important under many physiological and pathological conditions, and is a drug target for treating neurodegenerative diseases, cancers and inflammatory disorders. Without functional characterization, mammalian QCs and their orthologs remain indistinguishable at the sequence and structure levels from other M28-family proteins, leading to few reported QCs. Here, we show that a low-barrier carboxylic-acid hydrogen-bond network (CAHBN) is required for QC activity and discriminates QCs from M28-family peptidases. We demonstrate that the CAHBN-containing M28 peptidases deposited in the PDB are indeed QCs. Our analyses identify several thousands of QCs from the three domains of life, and we enzymatically and structurally characterize several. For the first time, the interplay between a CAHBN and the binuclear metal-binding center of mammalian QCs is made clear. We found that the presence or absence of CAHBN is a key discriminator for the formation of either the mono-Zn QCs or the di-Zn exopeptidases. Our study helps explain the possible roles of QCs in life.     

Evaluating impact of truck announcements on container stacking efficiency

Container stacking rules are an important factor in container terminal efficiency. We build on prior research and use a discrete-event simulation model to evaluate the impact of a truck announcement system on the performance of online container stacking rules. The information that is contained in the announcement, i.e., the expected departure time for an import container, can be used to schedule pre-emptive remarshall moves. These moves can then be performed when the workload is low in order to decrease the export time and the crane workload at peak times.     

Homogeneous quaternization of cellulose in NaOH/urea aqueous solutions as gene carriers

Quaternized celluloses (QCs) were homogeneously synthesized by reacting cellulose with 3-chloro-2-hydroxypropyltrimethylammonium chloride (CHPTAC) in NaOH/urea aqueous solutions. The structure and solution properties of the QCs were characterized by using elemental analysis, FTIR, (13)C NMR, SEC-LLS, viscometer, and zeta-potential measurement. The results revealed that water-soluble QCs, with a degree of substitution (DS) value of 0.20-0.63, could be obtained by adjusting the molar ratio of CHPTAC to anhydroglucose unit (AGU) of cellulose and the reaction time. The QC solutions in water displayed a typical polyelectrolyte behavior, and the intrinsic viscosity ([eta]) value determined from the Fuoss-Strauss method increased with increasing DS value. Moreover, two QC samples (DS = 0.46 and 0.63) were selected and studied as gene carriers. The results of gel retardation assay suggested that QCs could condense DNA efficiently. QCs displayed relatively lower cytotoxicity as compared with PEI, and QC/DNA complexes exhibited effective transfection compared to the naked DNA in 293T cells. The quaternized cellulose derivatives prepared in NaOH/urea aqueous solutions could be considered as promising nonviral gene carriers.     

Isolation and characterization of the glutaminyl cyclases from Solanum tuberosum and Arabidopsis thaliana: implications for physiological functions

Glutaminyl cyclases (QCs) catalyze the formation of pyroglutamic acid at the N-terminus of several peptides and proteins. On the basis of the amino acid sequence of Carica papaya QC, we identified cDNAs of the putative counterparts from Solanum tuberosum and Arabidopsis thaliana. Upon expression of the corresponding cDNAs from both plants via the secretory pathway of Pichia pastoris, two active QC proteins were isolated. The specificity of the purified proteins was assessed using various substrates with different amino acid composition and length. Highest specificities were observed with substrates possessing large hydrophobic residues adjacent to the N-terminal glutamine and for fluorogenic dipeptide surrogates. However, compared to Carica papaya QC, the specificity constants were approximately one order of magnitude lower for most of the QC substrates analyzed. The QCs also catalyzed the conversion of N-terminal glutamic acid to pyroglutamic acid, but with approximately 10(5)- to 10(6)-fold lower specificity. The ubiquitous distribution of plant QCs prompted a search for potential substrates in plants. Based on database entries, numerous proteins, e.g., pathogenesis-related proteins, were found that carry a pyroglutamate residue at the N-terminus, suggesting QC involvement. The putative relevance of QCs and pyroglutamic acid for plant defense reactions is discussed.     

Strategies for improving a long-established terminal’s performance: a simulation study of a Turkish container terminal

Due to a long-lasting increase in global trade, only interrupted by the late-2000s economic crisis, container traffic has grown dramatically. As a result, new terminals have opened and existing terminals face much higher container handling than before. In order to meet these challenges, one of the biggest container terminals in Turkey has begun to reconsider its terminal operations and to achieve improvements of its overall logistics performance. Because the factors impacting the terminal’s performance are highly interrelated, a simulation model was developed to analyze the terminal operations, to identify potential bottleneck resources and to highlight directions for the future development of the configuration and the operational control system. For a long-established terminal like the one considered in this study the options for improving the overall performance are limited by the geographical dimensions and by the existing terminal equipment. By use of the simulation model the terminal operations are evaluated under different workload scenarios and alternative configurations are tested in order to support strategic decisions on the terminal’s development.     

Strategic allocation of cyclically calling vessels for multi-terminal container operators

We consider a terminal operator who provides container handling services at multiple terminals within the same port. In this setting, the well-known berth allocation problem can no longer be considered for each terminal in isolation since vessel calls should be spread over the various terminals to avoid peaks and troughs in quay crane utilization, and an allocation of two connecting vessels to different terminals will generate inter-terminal container transport. In this paper, we address the problem of spreading a set of cyclically calling vessels over the various terminals and allocating a berthing and departure time to each of them. The objectives are (1) to balance the quay crane workload over the terminals and over time and (2) to minimize the amount of inter-terminal container transport. We develop a solution approach based on mixed-integer programming that allows to solve real-life instances of the problem within satisfactory time. Additionally, a practical case study is presented based on data from the terminal operator PSA Antwerp who operates multiple terminals in the port of Antwerp, Belgium. The computational results show the cost of the currently agreed schedules, and that relatively small modifications can significantly reduce the required crane capacities and inter-terminal transport.     

A chassis exchange terminal to reduce truck congestion at container terminals

Truck congestion for container terminals seems to be a worldwide unwanted phenomenon. In this paper we present and analyze a chassis exchange terminal concept to reduce the congestion. The terminal works as a kind of extended gate of a group of traditional container terminals. During the night containers are collected from these container terminals using chassis (or trailers). In daytime these containers on chassis are then collected and exchanged with export containers also on chassis. By exchanging the chassis we avoid extra handling of containers. As connecting and disconnecting to a chassis can be done in a short time, the chassis exchange terminal increases handling capacity substantially during peak hours. In this paper we analyze the concept for the Maasvlakte container terminals in Rotterdam. We investigate both the effect on waiting time, as well as the environmental effects.     

A batch correction method for liquid chromatography–mass spectrometry data that does not depend on quality control samples

The need for reproducible and comparable results is of increasing importance in non-targeted metabolomic studies, especially when differences between experimental groups are small. Liquid chromatography–mass spectrometry spectra are often acquired batch-wise so that necessary calibrations and cleaning of the instrument can take place. However this may introduce further sources of variation, such as differences in the conditions under which the acquisition of individual batches is performed. Quality control (QC) samples are frequently employed as a means of both judging and correcting this variation. Here we show that the use of QC samples can lead to problems. The non-linearity of the response can result in substantial differences between the recorded intensities of the QCs and experimental samples, making the required adjustment difficult to predict. Furthermore, changes in the response profile between one QC interspersion and the next cannot be accounted for and QC based correction can actually exacerbate the problems by introducing artificial differences. “Background correction” methods utilise all experimental samples to estimate the variation over time rather than relying on the QC samples alone. We compare non-QC correction methods with standard QC correction and demonstrate their success in reducing differences between replicate samples and their potential to highlight differences between experimental groups previously hidden by instrumental variation.     

Crystal Structures of Glutaminyl Cyclases (QCs) from Drosophila melanogaster Reveal Active Site Conservation between Insect and Mammalian QCs

Glutaminyl cyclases (QCs), which catalyze the formation of pyroglutamic acid (pGlu) at the N-terminus of a variety of peptides and proteins, have attracted particular attention for their potential role in Alzheimer's disease. In a transgenic Drosophila melanogaster (Dm) fruit fly model, oral application of the potent competitive QC inhibitor PBD150 was shown to reduce the burden of pGlu-modified Aβ. In contrast to mammals such as humans and rodents, there are at least three DmQC species, one of which (isoDromeQC) is localized to mitochondria, whereas DromeQC and an isoDromeQC splice variant possess signal peptides for secretion. Here we present the recombinant expression, characterization, and crystal structure determination of mature DromeQC and isoDromeQC, revealing an overall fold similar to that of mammalian QCs. In the case of isoDromeQC, the putative extended substrate binding site might be affected by the proximity of the N-terminal residues. PBD150 inhibition of DromeQC is roughly 1 order of magnitude weaker than that of the human and murine QCs. The inhibitor binds to isoDromeQC in a fashion similar to that observed for human QCs, whereas it adopts alternative binding modes in a DromeQC variant lacking the conserved cysteines near the active center and shows a disordered dimethoxyphenyl moiety in wild-type DromeQC, providing an explanation for the lower affinity. Our biophysical and structural data suggest that isoDromeQC and human QC are similar with regard to functional aspects. The two Dm enzymes represent a suitable model for further in-depth analysis of the catalytic mechanism of animal QCs, and isoDromeQC might serve as a model system for the structure-based design of potential AD therapeutics.     

Aligning barge and terminal operations using service-time profiles

We consider a key issue in hinterland container navigation in ports, such as Rotterdam and Antwerp, namely the barge handling problem: how to optimize the alignment of barge and terminal operations in a port. We make a major step in solving the barge handling problem for practical settings. Specifically, we consider restricted opening times of terminals, unbalanced networks, the presence of sea vessels, and closing times of containers. Consequently, at a terminal a barge faces time dependency in: (1) the waiting time until the start of handling and (2) the handling time itself. The concept of waiting profiles which we introduced in an earlier paper only deals with (1). To deal with (1) and (2) together we introduce a more comprehensive concept, namely that of service-time profile. To establish how well our approach works, we evaluate the performance of our distributed planning approach extensively by means of simulation. We compare our results with those based on centralized planning by using an off-line benchmark resembling it. We show that the Multi-Agent system that we introduce enables barge and terminal operators to align their operations efficiently. Hence, it can be seen as a promising solution approach for solving the barge handling problem, since it enables (competing) companies to collaborate in a competitive way.     

Pricing storage of outbound containers in container terminals

In container yard of container terminals, a storage charge is imposed to encourage customers to limit the space required for their containers. This study addresses the storage price scheduling problem for the storage of outbound containers. The price schedule consists of the free-time limit, which is the maximum duration for a container to stay in the yard without any charge, and storage charge per day for storing a container past the free-time-limit. Empirical data suggests that the efficiency of loading operations significantly depends on the space utilized by a vessel’s outbound containers. Mathematical models are developed to determine the optimal storage price schedule in such a manner that the terminal’s total profit is maximized or the total system’s cost is minimized. Both single and multi-vessel cases are considered. Properties of the optimal solution are derived from the mathematical models and numerical experiments are conducted to validate solutions.     

Trust-driven and QoS demand clustering analysis based cloud workflow scheduling strategies

Due to the restrictions that most traditional scheduling strategies only cared about users’ quality of service (QoS) time or cost requirements, lacked the effective analysis of users’ real service demand and could not guarantee scheduling security, this paper added trust into workflow’s QoS target and proposed a novel customizable cloud workflow scheduling model. In order to better analyze different user’s service requirements and provide customizable services, the new model divided workflow scheduling into two stages: the macro multi-workflow scheduling as the unit of cloud user and the micro single workflow scheduling. It introduced trust mechanism into multi-workflow scheduling level. And in single workflow scheduling level, it classified workflows into time-sensitive, cost-sensitive and balance three types according to different workflow’s QoS demand parameters using fuzzy clustering method. Based on it, it customized different service strategies for different type. The simulation experiments show that the new schema has some advantages in shortening workflow’s final completion time, achieving relatively high execution success rate and user satisfaction compared to other kindred solutions.     

A scheduling problem for a novel container transport system: a case of mobile harbor operation schedule

Mobile Harbor (MH) is a movable floating platform with a container handling system on board so that it can load/discharge containers to/from an anchored container ship in the open sea. As with typical quay crane operation, an efficient schedule for its operation is a key to enhancing its operational productivity. A MH operation scheduling problem is to determine a timed sequence of loading/discharging tasks, assignment of MH units to each task, and their docking position, with an objective of minimizing the makespan of a series of incoming container ships. A mixed integer programming model is formulated to formally define the problem. As a practical solution method to the problem, this paper proposes a rule-based algorithm and a random key based genetic algorithm (rkGA). Computational results show that the rkGA method produces a better-quality solution than the rule-based method, while requiring longer computation time.     

Structures of glycosylated mammalian glutaminyl cyclases reveal conformational variability near the active center

Formation of N-terminal pyroglutamate (pGlu or pE) from glutaminyl or glutamyl precursors is catalyzed by glutaminyl cyclases (QC). As the formation of pGlu-amyloid has been linked with Alzheimer's disease, inhibitors of QCs are currently the subject of intense development. Here, we report three crystal structures of N-glycosylated mammalian QC from humans (hQC) and mice (mQC). Whereas the overall structures of the enzymes are similar to those reported previously, two surface loops in the neighborhood of the active center exhibit conformational variability. Furthermore, two conserved cysteine residues form a disulfide bond at the base of the active center that was not present in previous reports of hQC structure. Site-directed mutagenesis suggests a structure-stabilizing role of the disulfide bond. At the entrance to the active center, the conserved tryptophan residue, W(207), which displayed multiple orientations in previous structure, shows a single conformation in both glycosylated human and murine QCs. Although mutagenesis of W(207) into leucine or glutamine altered substrate conversion significantly, the binding constants of inhibitors such as the highly potent PQ50 (PBD150) were minimally affected. The crystal structure of PQ50 bound to the active center of murine QC reveals principal binding determinants provided by the catalytic zinc ion and a hydrophobic funnel. This study presents a first comparison of two mammalian QCs containing typical, conserved post-translational modifications.     

A new approach to the Container Positioning Problem

In this paper the Container Positioning Problem is revisited. This problem arises at busy container terminals and requires one to minimize the use of block cranes in handling the containers that must wait at the terminal until their next means of transportation. We propose a new Mixed Integer Programming model that not only improves on earlier attempts at this problem, but also better reflects reality. In particular, the proposed model adopts a preference to reshuffle containers in line with a just-in-time concept, as it is assumed that data is more accurate the closer to a container’s scheduled departure the time is. Other important improvements include a reduction in the model size, and the ability of the model to consider containers initially at the terminal. In addition, we describe several classes of valid inequalities for this new formulation and present a rolling horizon based heuristic for solving larger instances of the problem. We show that this new formulation drastically outperforms previous attempts at the problem through a direct comparison on instances available in the literature. Furthermore, we also show that the rolling horizon based heuristic can further reduce the solution time on the larger of these instances as well as find acceptable solutions to much bigger, artificially generated, instances.     

Kinetics of rhodopsin deactivation and its role in regulating recovery and reproducibility of rod photoresponse

The single photon response (SPR) in vertebrate phototransduction is regulated by the dynamics of R* during its lifetime, including the random number of phosphorylations, the catalytic activity and the random sojourn time at each phosphorylation level. Because of this randomness the electrical responses are expected to be inherently variable. However the SPR is highly reproducible. The mechanisms that confer to the SPR such a low variability are not completely understood. The kinetics of rhodopsin deactivation is investigated by a Continuous Time Markov Chain (CTMC) based on the biochemistry of rhodopsin activation and deactivation, interfaced with a spatio-temporal model of phototransduction. The model parameters are extracted from the photoresponse data of both wild type and mutant mice, having variable numbers of phosphorylation sites and, with the same set of parameters, the model reproduces both WT and mutant responses. The sources of variability are dissected into its components, by asking whether a random number of turnoff steps, a random sojourn time between steps, or both, give rise to the known variability. The model shows that only the randomness of the sojourn times in each of the phosphorylated states contributes to the Coefficient of Variation (CV) of the response, whereas the randomness of the number of R* turnoff steps has a negligible effect. These results counter the view that the larger the number of decay steps of R*, the more stable the photoresponse is. Our results indicate that R* shutoff is responsible for the variability of the photoresponse, while the diffusion of the second messengers acts as a variability suppressor.     

计算机仿真技术在优化就医序列中的应用研究

积极推进预约诊疗服务、方便群众看病就医、缩短病人无效等候之间,是公立医院改革的重要课题,优化就医序列是解决上述课题的有效方法。通过计算机仿真技术充分挖掘现有医疗资源,可以优化调度资源,提高医院服务能力和质量。在分析了国内外计算机仿真技术在医院管理优化就医序列中的应用,初步研究了存在问题,并提出了相应的发展对策。