Analysis of intestinal cell proliferation after guanethidine-induced sympathectomy

Summary Guanethidine-induced sympathectomy in the rat during the neonatal period (injection of 20 g/g body weight every 48 h from day of birth until day 14) produces an absolute reduction in the number of sympathetic ganglion cells, but no significant alteration of body weight. Superior cervical ganglia show 79.8 % fewer cell bodies at 15 days and 92.3 % at 45 days; coeliac ganglia exhibit an 81.0 % reduction at 15 days and 89.6 % at 45 days in guanethidine-treated rats as compared to normal controls. The sympathetic ganglion cells that remain after treatment have an abnormal morphological appearance with distended mitochondria and depletion of endoplasmic reticulum. Sympathectomy produces a prolongation of the generation cycle time (Tc) as measured by the colchicine-induced mitotic arrest technique, and a decrease in labelling, mitotic, and migration indices. In addition, sympathectomy suppresses the amplitude of the circadian rhythm in mitotic activity. The general suppression of this activity in the intestinal epithelium is more pronounced in the jejunum and ileum than in the duodenum. Variation in the effectiveness of sympathectomy on the inhibition of intestinal cell proliferation may be related to segmental differences in cell proliferation, to segmental differences in innervation, and/or to segmental variation in the effectiveness of guanethidine.Supported by N.I.H. grant DE04557 to R.M.K. and N.I.H. grant 5-SO1-RR5373 to the University of Kansas Medical Center. The authors wish to acknowledge Charles A. Brownley, CIBA-Geigy, Summit New Jersey, U.S.A. for the gift of guanethidine-sulfate     

Genetic control of cardiac tube formation in Drosophila

In Drosophila, the heart is composed of a simple linear tube constituted of 52 pairs of myoendothelial cells which differentiate during embryogenesis to build up a functional mature organ. The cardiac tube is a contractile organ with autonomous muscular activity which functions as a hemolymph pump in an open circulatory circuit. The cardiac tube is organized in metamers which contain six pairs of cardioblasts per segment. Within each metamer the cardioblasts express a combination of genetic markers underlying their functional diversity. For example, the two most posterior cardiac cells in segments A5 to A7 differentiate into ostiae which allow the inflow of hemolymph in the tube. An additional axial information along the anteroposterior axis orchestrates the subdivision of the cardiac tube into an "aorta" in the anterior region and a "heart" in the posterior region which behave as distinct functional entities. The major pacemaker activity is located in the most caudal part of the heart. This analysis has being made possible by the identification and the utilization of specific morphological and genetic markers and an in vivo observation of cardiac function in the embryo. Functional organogenesis of the cardiac tube is accurately controlled by genetic programs that have been in part identified. Hox genes are responsible for the axial subdivision of the tube into functional modules. They activate, in their specific domains of expression, target genes effectors of the terminal differentiation. On the other hand, part of the information required for segmental information is provided by Hedgehog, a morphogen secreted by dorsal ectoderm, whose activity triggers the ostiae formation in the heart domain.     

Activation imbalances in lumbar spine muscles in the presence of chronic low back pain.

Paraspinal electromyographic (EMG) activity was recorded bilaterally from three lumbar levels during 30-s isometric trunk extensions [40 and 80% of maximum voluntary contraction (MVC)] in 20 healthy men and 14 chronic low back pain patients in pain. EMG parameters indicating neuromuscular fatigue and contralateral imbalances in EMG root-mean-square amplitude and median frequency were analyzed. Patients in pain showed less fatigue than controls at both contraction levels and produced only 55% of their MVC. Patients in pain likely did not produce a "true" maximum effort. A low MVC estimate would mean lower absolute contraction levels and less neuromuscular fatigue, thus explaining lower scores in the patients. Contralateral root-mean-square amplitude imbalances were present in both categories of subjects although such imbalances, when averaged across lumbar levels, were significantly larger in patients. Median frequency imbalances were significantly larger in the patients, at segmental as well as across lumbar levels. These results suggest that the presence of pain in these patients caused a redistribution of the activation behavior between synergistic muscles of the lumbar back.     

Dynamic properties of segmental characteristics of EEG alpha activity in rest conditions and during cognitive tasks

Segmental structure of the alpha activity of human EEG was studied in the state of rest and during arithmetical task performance with mono- and binaural listening of task instruction and binaural listening of music. The amplitude, duration, amplitude variability and steepness of between-segment transitions were calculated as segmental characteristics. It was shown that all of these characteristics are sensitive to the cognitive tests but the degree of this sensitivity depends on the cortex area and type of the cognitive task. Most pronounced changes in the segmental characteristics were observed during arithmetic task with left-side instruction presentation and minimal changes were seen during binaural listening of music.     

Criterion and Concurrent Validity of the activPAL? Professional Physical Activity Monitor in Adolescent Females

Background

The activPAL has been identified as an accurate and reliable measure of sedentary behaviour. However, only limited information is available on the accuracy of the activPAL activity count function as a measure of physical activity, while no unit calibration of the activPAL has been completed to date. This study aimed to investigate the criterion validity of the activPAL, examine the concurrent validity of the activPAL, and perform and validate a value calibration of the activPAL in an adolescent female population. The performance of the activPAL in estimating posture was also compared with sedentary thresholds used with the ActiGraph accelerometer.

Methodologies

Thirty adolescent females (15 developmental; 15 cross-validation) aged 15–18 years performed 5 activities while wearing the activPAL, ActiGraph GT3X, and the Cosmed K4B2. A random coefficient statistics model examined the relationship between metabolic equivalent (MET) values and activPAL counts. Receiver operating characteristic analysis was used to determine activity thresholds and for cross-validation. The random coefficient statistics model showed a concordance correlation coefficient of 0.93 (standard error of the estimate = 1.13). An optimal moderate threshold of 2997 was determined using mixed regression, while an optimal vigorous threshold of 8229 was determined using receiver operating statistics. The activPAL count function demonstrated very high concurrent validity (r = 0.96, p<0.01) with the ActiGraph count function. Levels of agreement for sitting, standing, and stepping between direct observation and the activPAL and ActiGraph were 100%, 98.1%, 99.2% and 100%, 0%, 100%, respectively.

Conclusions

These findings suggest that the activPAL is a valid, objective measurement tool that can be used for both the measurement of physical activity and sedentary behaviours in an adolescent female population.     

Randomness of spontaneous activity and information transfer in neurons

The analysis of information coding in neurons requires methods that measure different properties of neuronal signals. In this paper we review the recently proposed measure of randomness and compare it to the coefficient of variation, which is the frequently employed measure of variability of spiking neuronal activity. We focus on the problem of the spontaneous activity of neurons, and we hypothesize that under defined conditions, spontaneous activity is more random than evoked activity. This hypothesis is supported by contrasting variability and randomness obtained from experimental recordings of olfactory receptor neurons in rats.     

Physiology of the esophageal pressure transition zone: separate contraction waves above and below

Manometrically measured peristaltic pressure amplitude displays a well-defined trough in the upper esophagus. Whereas this manometric "transition zone" (TZ) has been associated with striated-to-smooth muscle fiber transition, the underlying physiology of the TZ and its role in bolus transport are unclear. A computer model study of bolus retention in the TZ showed discoordinated distinct contraction waves above and below. Our aim was to test the hypothesis that distinct upper/lower contraction waves above/below the manometric TZ are normal physiology and to quantify space-time coordination between tone and bolus transport through the TZ. Eighteen normal barium swallows were analyzed in 6 subjects with concurrent 21-channel high-resolution manometry and digital fluoroscopy. From manometry, the TZ center (nadir pressure amplitude) and the upper/lower margins of the pressure trough were objectively quantified. Using fluoroscopy, we quantified space-time trajectories of the bolus tail and bolus tail pressures and maximum intraluminal pressures proximal to the tail with their space-time trajectories. In every swallow, the bolus tail followed distinct trajectories above/below the TZ, separated by a well-defined spatial "jump" that terminated an upper contraction wave and initiated a lower contraction wave (3.32 +/- 1.63 cm, P = 0.0004). An "indentation wave" always formed within the TZ distal to the upper wave, increasing in amplitude until the lower wave was initiated. As the upper contraction wave tail entered the TZ, it slowed and the tail pressure reduced rapidly, while indentation wave pressure increased to normal tail pressure values at the initiation of the lower wave. The TZ was a special zone of segmental contraction. The TZ is, physiologically, the transition from an upper contraction wave originating in the proximal striated esophagus to a lower contraction wave that moves into the distal smooth muscle esophagus. Complete bolus transport requires coordination of upper/lower waves and sufficient segmental squeeze to fully clear the bolus from the TZ during the transition period.     

Analysis of the segmental structure of EEG alpha-activity in humans

Phasic organisation of human EEG alpha activity was studied in a pilot investigation using a previously suggested EEG segmental analysis methodology. The EEG was recorded in three normal subjects under resting conditions. The segmentation procedure enabled effective identifying of the periods with different amplitude in alpha band and the short-term transitions between them. Mean intersegmental variability of amplitude envelope were computed for the eyes closed and eyes open EEG in each of 16 standard derivations. Analysis of segment amplitude distributions showed that the difference between the average alpha activity amplitude in these conditions were determined mainly by variations in the number of segments of different amplitude classes and not by a shift of the distribution or by change of its width. Distribution and quartile analysis of mean segment amplitudes provide evidence for possible functional heterogeneity of upper and middle subranges of the amplitude range.     

The normal human renal glomerulus

A detailed analysis has been made of human renal biopsy tissue from thirteen subjects, judged to be "normal" by a variety of clinical tests. Analysis was made subjectively, and where possible by objective measurement, of routine diagnostic preparations, and of montages of entire glomeruli. Each approach provided useful information which had not been recorded before. Subjective examination was valuable only in the detection of glomerular changes that represent glomerular damage by their very presence of which are present in extreme degree. The random photography of material prepared for outline examination provided data for the quantitation of several glomerular constituents, and information concerning epithelial cell organelle content. Whole glomerular montages provided the opportunity to measure many more parameters of overall glomerular architecture. Comparisons were made, when possible, with the results of other workers.     

Normalization of Voltage-Sensitive Dye Signal with Functional Activity Measures

In general, signal amplitude in optical imaging is normalized using the well-established ΔF/F method, where functional activity is divided by the total fluorescent light flux. This measure is used both directly, as a measure of population activity, and indirectly, to quantify spatial and spatiotemporal activity patterns. Despite its ubiquitous use, the stability and accuracy of this measure has not been validated for voltage-sensitive dye imaging of mammalian neocortex in vivo. In this report, we find that this normalization can introduce dynamic biases. In particular, the ΔF/F is influenced by dye staining quality, and the ratio is also unstable over the course of experiments. As methods to record and analyze optical imaging signals become more precise, such biases can have an increasingly pernicious impact on the accuracy of findings, especially in the comparison of cytoarchitechtonic areas, in area-of-activation measurements, and in plasticity or developmental experiments. These dynamic biases of the ΔF/F method may, to an extent, be mitigated by a novel method of normalization, ΔF/ΔF_epileptiform. This normalization uses as a reference the measured activity of epileptiform spikes elicited by global disinhibition with bicuculline methiodide. Since this normalization is based on a functional measure, i.e. the signal amplitude of “hypersynchronized” bursts of activity in the cortical network, it is less influenced by staining of non-functional elements. We demonstrate that such a functional measure can better represent the amplitude of population mass action, and discuss alternative functional normalizations based on the amplitude of synchronized spontaneous sleep-like activity. These findings demonstrate that the traditional ΔF/F normalization of voltage-sensitive dye signals can introduce pernicious inaccuracies in the quantification of neural population activity. They further suggest that normalization-independent metrics such as waveform propagation patterns, oscillations in single detectors, and phase relationships between detector pairs may better capture the biological information which is obtained by high-sensitivity imaging.     

On the nature of the unfolded intermediate in the in vitro transition of the colicin E1 channel domain from the aqueous to the membrane phase.

The transition of the colicin E1 channel polypeptide from a water-soluble to membrane-bound state occurs in vitro at acid pH values that are associated with an unfolded channel structure whose properties qualitatively resemble those of a "molten globule," or "compact unfolded," intermediate state. The role of such a state for activity was tested by comparing the pH dependence of channel-induced solute efflux and the amplitude of the near-UV CD spectrum. The requirement of a partly unfolded state for activity was shown by the coincidence of the onset of channel activity measured for 4 different lipid compositions with the decrease in near-UV CD amplitude as a function of pH. Tertiary constraints on the 3 tryptophans of the colicin channel, assayed by the amplitude of the near-UV CD spectrum, are retained over the pH range 3-4 where channel activity could be measured and, as well, at pH 2. In addition, the tryptophan fluorescence emission spectrum is virtually unchanged over the pH range 2-6. The temperature independence of the near-UV spectrum at pH 3-6 up to 70 degrees C implies that the colicin E1 channel polypeptide is more stable than that of colicin A. A transition between 53 and 58 degrees C in the amplitude of the near-UV CD is consistent with preservation of part of the hydrophobic core in a destabilized state at pH 2. Thus, the unfolded state associated with colicin activity at acidic pH has the properties of a "compact unfolded" state, having some, but not all of the properties of a "molten globule."(ABSTRACT TRUNCATED AT 250 WORDS)     

Estimating mutual information using B-spline functions – an improved similarity measure for analysing gene expression data

Background

The information theoretic concept of mutual information provides a general framework to evaluate dependencies between variables. In the context of the clustering of genes with similar patterns of expression it has been suggested as a general quantity of similarity to extend commonly used linear measures. Since mutual information is defined in terms of discrete variables, its application to continuous data requires the use of binning procedures, which can lead to significant numerical errors for datasets of small or moderate size.

Results

In this work, we propose a method for the numerical estimation of mutual information from continuous data. We investigate the characteristic properties arising from the application of our algorithm and show that our approach outperforms commonly used algorithms: The significance, as a measure of the power of distinction from random correlation, is significantly increased. This concept is subsequently illustrated on two large-scale gene expression datasets and the results are compared to those obtained using other similarity measures.A C++ source code of our algorithm is available for non-commercial use from kloska@scienion.de upon request.

Conclusion

The utilisation of mutual information as similarity measure enables the detection of non-linear correlations in gene expression datasets. Frequently applied linear correlation measures, which are often used on an ad-hoc basis without further justification, are thereby extended.

     

Optical and electrical recording of neural activity evoked by graded contrast visual stimulus

Background  

Brain activity has been investigated by several methods with different principles, notably optical ones. Each method may offer information on distinct physiological or pathological aspects of brain function. The ideal instrument to measure brain activity should include complementary techniques and integrate the resultant information. As a "low cost" approach towards this objective, we combined the well-grounded electroencephalography technique with the newer near infrared spectroscopy methods to investigate human visual function.     

Shannon information in complete genomes

Shannon information in the genomes of all completely sequenced prokaryotes and eukaryotes are measured in word lengths of two to ten letters. It is found that in a scale-dependent way, the Shannon information in complete genomes are much greater than that in matching random sequences--thousands of times greater in the case of short words. Furthermore, with the exception of the 14 chromosomes of Plasmodium falciparum, the Shannon information in all available complete genomes belong to a universality class given by an extremely simple formula. The data are consistent with a model for genome growth composed of two main ingredients: random segmental duplications that increase the Shannon information in a scale-independent way, and random point mutations that preferentially reduces the larger-scale Shannon information. The inference drawn from the present study is that the large-scale and coarse-grained growth of genomes was selectively neutral and this suggests an independent corroboration of Kimura's neutral theory of evolution.     

On Use of Transformed Auxiliary Information in Probability Proportional to Size Method of Sample Selection

A probability proportional to size (PPS) method of sample selection, based on the transformed auxiliary information as the measure of size, has been suggested. It has been observed that the PPS estimator under the suggested method is always better than the simple random sampling with replacement (SRSWR) and the usual PPSWR estimator. The efficiency of the proposed estimator with respect to the estimators under reference has also been empirically compared.     

Redundancy and synergy arising from pairwise correlations in neuronal ensembles

Multielectrode arrays allow recording of the activity of many single neurons, from which correlations can be calculated. The functional roles of correlations can be revealed by measures of the information conveyed by neuronal activity; a simple formula has been shown to discriminate the information transmitted by individual spikes from the positive or negative contributions due to correlations (Panzeri et al., 1999). Here, this analysis, previously applied to recordings from small ensembles, is developed further by considering a model of a large ensemble, in which correlations among the signal and noise components of neuronal firing are small in absolute value and entirely random in origin. Even such small random correlations are shown to lead to large possible synergy or redundancy, whenever the time window for extracting information from neuronal firing extends to the order of the mean interspike interval. In addition, a sample of recordings from rat barrel cortex illustrates the mean time window at which such corrections dominate when correlations are, as often in the real brain, neither random nor small. The presence of this kind of correlations for a large ensemble of cells restricts further the time of validity of the expansion.     

Maternity length of stay modelling by gamma mixture regression with random effects

Maternity length of stay (LOS) is an important measure of hospital activity, but its empirical distribution is often positively skewed. A two-component gamma mixture regression model has been proposed to analyze the heterogeneous maternity LOS. The problem is that observations collected from the same hospital are often correlated, which can lead to spurious associations and misleading inferences. To account for the inherent correlation, random effects are incorporated within the linear predictors of the two-component gamma mixture regression model. An EM algorithm is developed for the residual maximum quasi-likelihood estimation of the regression coefficients and variance component parameters. The approach enables the correct identification and assessment of risk factors affecting the short-stay and long-stay patient subgroups. In addition, the predicted random effects can provide information on the inter-hospital variations after adjustment for patient characteristics and health provision factors. A simulation study shows that the estimators obtained via the EM algorithm perform well in all the settings considered. Application to a set of maternity LOS data for women having obstetrical delivery with multiple complicating diagnoses is illustrated.     

Atomic force microscopy visualization and measurement of the activity and physicochemical properties of single monomeric and oligomeric enzymes

An approach to measure the activity of single oligomers of the heme-containing enzyme cytochrome P450 CYP102A1 (CYP102A1) by atomic force microscopy (AFM) has been developed. It was found that the amplitude of fluctuations of the height of single CYP102A1 molecules performing the catalytic cycle is twice as great as the amplitude of fluctuations of the height of the same enzymes in the inactive state. It was shown that the amplitude of height fluctuations of a CYP102A1 protein globule depends on temperature, the maximum of this dependence being observed at 22°C. The activity of a single CYP102A1 molecule in the unit amplitude of height fluctuations of a protein globule per unit time was 5 ± 2 protein molecule was measured from the deformation of this molecule by the action of an AFM probe. The use of AFM probes of different geometry made it possible to determine the integral and local Young’s modulus for the monomers of the protein putidaredoxin reductase from the cytochrome P450 CYP101 (P450cam)-containing monooxigenase system, which were 37 ± 117 and 1 ± 3 MPa, respectively.     

Trunk segment numbers and sequential segmentation in myriapods

Sequential segmentation from a posterior "proliferative zone" is considered to be the primitive mechanism of segmentation in arthropods. Several studies of embryonic and post-embryonic development and gene expression suggest that this occurs in all major arthropod taxa. Sequential segmentation is often associated with the idea of posterior production of body units that accumulate along the main body axis. However, the precise mechanism of sequential segmentation has not been identified yet, and, while searching for the genetic circuitry able to generate a first periodic pattern in the embryo, we can at least outline the distinctive role in segmentation of a proliferative zone. A perusal of myriapod segmentation patterns suggests that these patterns result from multi-layered developmental processes, where gene expression and epigenetic mechanisms interact in a nonstrictly hierarchical way. The posterior zone is possibly a zone of periodic signal production, but, in general, the resulting segmental pattern is not completely attributable to the activity of the signal generator. In this sense, a posterior proliferative zone would be more a "segmental organizer" than a "segment generator."