To some reasonable test procedures in multiple contingency tables to investigate certain epidemiological or medicin-sociological relationships

One of the most important tasks of the application of mathematical-statistical methods consists in giving help in the search for possible relationships, and connected with this, the specification of new hypotheses. The progress of both the special diciplines of sciences and mathematical statistics itself leads to the application of more and more complex, that means multivariate, methods. In medical fields, especially in epidemiological and medicin-sociological studies, this fact means the necessity of analysing multidimensional contingency tables. The above formulated problem is equivalent to the problem of fitting an appropriate mathematical model (for contingency tables is this a log-linear model) to the data in a way which makes the structural relationships clear to us. In this paper it is shown that one is able to get to well-interpretable models of independence with relatively simple means. Two stepwise test procedures are described yielding essentially the same results: a so called reduction procedure which is particularly profitable in sparsely occupied tables and a procedure which uses a combination of hypotheses of conditional pairwise independence.     

基于贝叶斯网潜类模型的高维SNPs分析

采用贝叶斯(Bayesian)网的潜类模型对GAW17高维SNPs数据进行分析,为复杂性状疾病遗传以及基因定位等方面的研究提供新的方法支持。本研究从GAW17提供的包含697个个体22条常染色体的上万个SNP中,随机挑选出1号染色体上12个基因的29个SNPs作为研究对象。按照累计信息贡献率达到95%的原则,应用贝叶斯网潜变量模型选出C1S11408,C1S3201,C1S1786等15个与X0互信息量大的SNPs位点来对研究人群进行分类与解释。结果表明697个个体总的被分为2个潜在类别,各类别的概率分别为0.68和0.32。对两类人群的疾病分布状况进行分析,结果表明二者不一致,第二个类别人群患病率(38.64%)明显高于第一个类别人群(25.99%)(χ2=11.46,P=0.001)。由此可见,两类人群疾病患病率的差别正是由选出的15个SNPs造成的,从而有理由认为这些SNPs为可疑致病位点,为进一步的研究提供明确的思路。     

The Power Function of the Test for ‘No Three Factor Interaction’ in 2×2×2 Contingency Tables

Three approximations to the power function of the chi-square test for the hypotheses of ‘no three factor interaction’ in a 2 × 2 × 2 contingency table are introduced and compared. The first method is based on the sampling distribution of the logarithm of the odds ratio, the second-on the non-central X² distribution and the third—on the conditional distribution of a cell entry. The last method is found to provide the closest approximation under various alternative hypotheses and sample sizes.     

Frequencies of transferrin types in various breeds of domestic dogs

Plasma transferrin (Tf) types in dogs were studied by a method of horizontal polyacrylamide gel electrophoresis with a 10 % separation gel and a discontinuous buffer system (Tris-citrate-borate, pH 9.0). Samples were analysed from 1127 dogs belonging to 60 different breeds. Tf^B and Tf^c alleles, each in considerably high frequency, were observed in most of the breeds. Tf^A with relatively lower frequency was observed in Beagle, Cocker Spaniel, Doberman Pinscher, German Shepherd, German Shorthaired Pointer, Old Danish Pointer and Poodle. Two rare Tf alleles, Tf^D and the other designated as Tf^E, were observed only in Cocker Spaniel and in Poodle respectively. Basenji (44 samples) and Small Münsterlander (17 samples) showed the highest frequency (0.97) for Tf^C allele while Carelian Bear Dog (19 samples) showed the highest frequency (0.97) for Tf^B allele. In the total material, the frequencies of Tf alleles A, B, C, D and E were found to be 0.0182, 0.5075, 0.4716, 0.0009 and 0.0018 respectively. By using the observed and expected numbers of Tf heterozygotes, the average inbreeding coefficient (F) within breeds was estimated to be 0.14. Six samples of wolf (Canis lupus L.) studied seemed to be of Tf B type. The present study, along with earlier reports, showed that some of the plasma proteins and enzymes (albumin, transferrin, eserine resistant esterase) exhibit considerably more polymorphism than that reported for hemoglobin and some of the red cell and tissue enzymes in the domestic dog.     

Septin Form and Function at the Cell Cortex

Septins are GTP-binding proteins that form filaments and higher-order structures on the cell cortex of eukaryotic cells and associate with actin and microtubule cytoskeletal networks. When assembled, septins coordinate cell division and contribute to cell polarity maintenance and membrane remodeling. These functions manifest themselves via scaffolding of cytosolic proteins and cytoskeletal networks to specific locations on membranes and by forming diffusional barriers that restrict lateral diffusion of proteins embedded in membranes. Notably, many neurodegenerative diseases and cancers have been characterized as having misregulated septins, suggesting that their functions are relevant to diverse diseases. Despite the importance of septins, little is known about what features of the plasma membrane influence septin recruitment and alternatively, how septins influence plasma membrane properties. Septins have been localized to the cell cortex at the base of cilia, the mother-bud neck of yeast, and branch points of filamentous fungi and dendritic spines, in cleavage furrows, and in retracting membrane protrusions in mammalian cells. These sites all possess some degree of curvature and are likely composed of distinct lipid pools. Depending on the context, septins may act alone or in concert with other cytoskeletal elements to influence and sense membrane properties. The degree to which septins react to and/or induce changes in shape and lipid composition are discussed here. As septins are an essential player in basic biology and disease, understanding the interplay between septins and the plasma membrane is critical and may yield new and unexpected functions.     

Statistical Significance of Mutation Frequencies,and the Power of Statistical Testing,Using the Poisson Distribution

The Poisson distribution may be employed to test whether mutation frequencies differ from control frequencies. This paper describes how this testing procedure may be used for either one-tailed or two-tailed hypotheses. It is also shown how the power of the statistical test can be calculated, the power being the probability of correctly concluding the null hypothesis to be false.     

Pollen Cell Wall Patterns Form from Modulated Phases

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A Comparison of Tests for Marginal Homogeneity in Square Contingency Tables

Several asymptotic tests were proposed for testing the null hypothesis of marginal homogeneity in square contingency tables with r categories. A simulation study was performed for comparing the power of four finite conservative conditional test procedures and of two asymptotic tests for twelve different contingency schemes for small sample sizes. While an asymptotic test proposed by STUART (1955) showed a rather satisfactory behaviour for moderate sample sizes, an asymptotic test proposed by BHAPKAR (1966) was quite anticonservative. With no a priori information the performance of (r - 1) simultaneous conditional binomial tests with a Bonferroni adjustment proved to be a quite efficient procedure. With assumptions about where to expect the deviations from the null hypothesis, other procedures favouring the larger or smaller conditional sample sizes, respectively, can have a great efficiency. The procedures are illustrated by means of a numerical example from clinical psychology.     

关于HCMV潜伏感染与激活感染研究的新进展

人巨细胞病毒（HCMV）是疱疹病毒科中最大的病毒,结构复杂,其感染在人群中非常普遍,近年来免疫妥协（immunocompmmised）群体尤其是移植群体中的HCMV潜伏感染和激活感染越来越受到临床重视。本文就HCMV的感染与免疫、HCMV的致病机制、宿主的抗感染与免疫、HCMV的免疫逃逸、HCMV的潜伏与激活及HcMV相关研究的困境与展望近年来此方面研究新进辰作一简要综述。     

Asymptotic Relative Efficiency of Some Jackknife Estimators of a Common Odds Ratio

In the situation of several 2 × 2 tables the asymptotic relative efficiencies of certain jackknife estimators of a common odds ratio are investigated in the case that the number of tables is fixed while the sample sizes within each table tend to infinity. The estimators show very good results over a wide range of parameters. Some situations in which the estimators have low asymptotic relative efficiency are pointed out:.     

Effect of Latent Iron Deficiency on 5-Hydroxytryptamine Metabolism in Rat Brain

Eight weeks of latent iron deficiency in weaned rats maintained on an experimental low iron content diet (18-20 mg/kg) did not significantly alter the packed cell volume and hemoglobin concentration; however, the hepatic and brain nonheme iron contents decreased by 66% and 21% (p less than 0.001), respectively. The tryptophan concentration decreased by 31% and 34% in liver and brain, respectively, in rats on experimental diet (p less than 0.01). The brain 5-hydroxytryptamine and 5-hydroxyindoleacetic acid contents were reduced by 21% and 23% (p less than 0.01 and p less than 0.02), respectively. However, in the brain, weight, protein, DNA, and the activities of monoamine oxidase, aldehyde dehydrogenase, and liver tryptophan oxygenase were found to remain unaltered. When rehabilitated with a diet containing 390 mg/kg iron, rats previously maintained on the experimental diet for 2 weeks showed partial recovery in tryptophan levels both in liver and brain. However, brain 5-hydroxytryptamine and 5-hydroxyindoleacetic acid levels remained unaltered. The hepatic iron content improved without any change in brain iron content. The latent iron deficiency produced significant alterations in the metabolism of 5-hydroxytryptamine and brain iron content that could not be recovered 2 weeks after the iron rehabilitation.     

Estimating Selection Coefficients in Spatially Structured Populations from Time Series Data of Allele Frequencies

Inferring the nature and magnitude of selection is an important problem in many biological contexts. Typically when estimating a selection coefficient for an allele, it is assumed that samples are drawn from a panmictic population and that selection acts uniformly across the population. However, these assumptions are rarely satisfied. Natural populations are almost always structured, and selective pressures are likely to act differentially. Inference about selection ought therefore to take account of structure. We do this by considering evolution in a simple lattice model of spatial population structure. We develop a hidden Markov model based maximum-likelihood approach for estimating the selection coefficient in a single population from time series data of allele frequencies. We then develop an approximate extension of this to the structured case to provide a joint estimate of migration rate and spatially varying selection coefficients. We illustrate our method using classical data sets of moth pigmentation morph frequencies, but it has wide applications in settings ranging from ecology to human evolution.     

The Exact Evaluation of 2-way Cross-classifications: The Combinatory Distribution

A practical methodology is presented for the exact combinatory evaluation of 2-way cross-classifications. The combinatory distribution is based on a test-statistic relating to the information content of an observed table. Several examples of exact evaluation accompany this presentation.     

Frequencies of plasma protease inhibitor alleles in Australian horse breeds and the recognition of two new alleles

Investigation of the plasma protease inhibitor system (Pi) in the Arabian and quarter horse breeds and re-examination of the standardbred breed resulted in the recognition of two new Pi alleles, designated E and L2. PiE is rare and has been found in only three quarter horses. In contrast, PiL2 is relatively common in the standardbred (0.107) and allowed subdivision of PiL into PiL and PiL2. Splitting of PiL resulted in an exclusion probability (PE) of 0.649 for the standardbred Pi system. Frequencies of the Pi genes have now been determined for four breeds (thoroughbred, standardbred, quarter horse and Arabian) of horses in Australia.     

Necrosis Is an Active and Controlled Form of Programmed Cell Death

In all studies on programmed cell death (PCD) and apoptosis as its most showy form, this process was considered to be a paradigmatic antithesis to necrotic cell death. On one hand, a concept on necrosis as a cellular cataclysm, an uncontrolled and passive phenomenon, had been provoked by an enormous bulk of experimental data on its inducibility by super-physiological exposures. On the other hand, much attention was attracted to a rapidly expanding (from nematodes) field of genetic studies on PCD. However, the findings accumulated which suggested a likeness rather than the opposition of the necrotic and apoptotic forms of elimination of unwanted cells. 1. Very diverse pathophysiological exposures (stimuli, stresses), such as heat, ionizing radiation, pathogens, cytokines cause both forms of cell death in the same cell population. 2. Antiapoptotic mechanisms (e.g., Bcl-2) can protect cells from both necrotic and apoptotic destruction. 3. Biochemical interventions (e.g., with inhibitors of poly-(ADP-riboso)-polymerase) into the signal and executive mechanisms of PCD can change the choice of the cell death form. 4. During both necrosis and epigenetic programs of apoptotic cell death that need no macromolecular synthesis (e.g., the CD95-dependent death), the nucleus plays a passive role. Therefore, necrosis, similarly to apoptosis, is suggested to be a form of the programmed cell death. However, for the whole body the physiological consequences of apoptosis and necrosis are quite different. In the case of apoptosis, all constituents of the nucleus and cytoplasm are isolated by an undamaged membrane and then by phagocytes together with the membrane-bound eat me markers (phosphatidylserine, etc.). In other words, the elimination of the cell which has realized its apoptotic program remains virtually unnoticed by the body. In the case of necrosis, the cytoplasmic content released into the intercellular space provokes an inflammatory response, i.e., an activation of resident phagocytes and attraction of leukocytes into the necrosis zone. It is suggested that under pathophysiological conditions, the necrotic cell destruction should amplify and catalyze pathological processes. The experimental data available now suggest that a disturbance in the body of optimal balance between the necrotic and apoptotic forms of PCD should be a crucial factor in the development of various pathophysiological processes associated with inflammation (diabetes, arthritis) or with aging (atherosclerosis, neurodegenerative diseases).     

潜在腺病毒感染的肺泡上皮细胞模型的构建

为了探讨腺病毒潜伏感染对正常气道上皮细胞生理功能的影响以及与呼吸道疾病发生、发展的关系,构建了含腺病毒最主要效应蛋白E1A的高效真核表达载体,转染正常大鼠肺泡上皮细胞(CCL149),经过长期抗性筛选获得多个抗性细胞克隆,应用PCR、RT-PCR、Western印记和免疫组化的方法对抗性克隆进行鉴定,最终获得不同E1A蛋白表达强度的阳性细胞克隆。通过细胞增殖曲线和周期分析,观察E1A基因对细胞基本功能的影响。结果显示,E1A基因明显抑制细胞增殖周期,引起细胞S期比例下降,G1期延长,同时E1A能明显增强TNFα诱导下的细胞凋亡。     

Rank Analysis of Block Designs Having Different Cell Frequencies

A distribution–free test is considered for testing the treatment effects in block designs with different cell frequencies. A test statistic which is a function of treatment ranks has been proposed which is distributed as chi-square for large samples. The null distribution of the test statistic has been obtained. The entire procedure has been explained by a numerical example.     

影响林火灾变生态阈值数学模拟的潜在因子的数学模型

用多元统计分析方法对大兴安岭林区的林火灾变的有关观测数据进行综合分析,提出了影响林火灾变性生态阈值数学模拟的潜在因子的数学模型,并对该模型作出了一些有益的讨论。     

On the Analysis of Special Incomplete Three-dimensional Contingency Tables

Incomplete contingency tables, i.e. tables with structurally caused empty cells, are analysed by means of so-called quasilog-linear models. In general the expected values can be calculated by means of iterative cyclic adaption to corresponding marginals of the empirical contingency tables (in the same way as in complete tables) under different hierarchical hypotheses concerning the parameters of the models. For important cases of 2-dimensional contingency tables it is possible to demonstrate that expected values and test statistics are to find in a closed form. If all 2-dimensional sub or partial tables of a 3-dimensional table can be assigned to such cases then the hypotheses of classes (AB×C) (??), (B×C)/A(??), (A??B)/A(??) etc. are testable in closed form. But the expected values to (A×B×C) (×) have to be calculated iteratively. An example shows that some definite additive decompositions of the test statistic 2 I are no longer valid while some others remain valid in spite of incompleteness of the tables.