Fractal dimension analysis of factor X activation in the presence of tissue factor-factor viia complex in a continuous flow reactor

Summary The characteristics of a phospholipid surface are of major importance in the activation of factor X in the presence of tissue factor-factor VIIa (TF-VIIa) complex. A possible tool which provides a measure of the surface corrugation and roughness is the fractal dimension analysis. This paper uses the fractal characterization of a phospholipid surface to develop a model for analyzing surface based enzymatic reaction data. The modeling indicates that the fractal dimension (D) of a phospholipid surface is a function of the wall shear rate. The results also indicate that the fractal dimension of the phospholipid surface decreases from approximately 2.9 to 1.4 as the wall shear rate increases from 50 to 1600 sec^–1. At the same time the factor Xa production increases from 1.9 to 5.8 pmoles/ (min. cm^–2).The results of the fractal dimension analysis clearly indicates that the surface roughness of a phospholipid surface may have a significant effect on factor X activation.     

Evaluation of intrinsic immobilized kinetic parameters for factor X activation in a flow reactor

Summary Development of a double exponential model for determining the intrinsic kinetic parameters for factor X activation by tissue factor-factor VIIa (TF:VIIa) complex, during the complete course of the reaction in a flow reactor is described. The model data reveal that the factor X activation rate constant K₁ gradually increased from 0.0225 to 0.0456 min^-1 as the shear rate increased from 50 to 3000 sec^-1, whereas the factor Xa inhibition rate constant K₂ increased dramatically from 0.307 to 1.09 min^-1 for a similar increase in shear rate.     

Relationships between Binding Quality of Meat and Myofibrillar Proteins

The viscosity change of myosin A concentrated solution with or without other components was measured as the incubation time elapsed at 30°C.

The viscosity of myosin A solution increased, but that of F-actin solution did not. The shear stress at 0.04 sec^?1 was not increased to 1.0 dyne/cm² in the former, but in the latter was below 0.5 dyne/cm².

The viscosity of myosin B solution increased slightly, but that of native tropomyosin-free myosin B solution decreased remarkably. In both the shear stress at 0.04 sec^?1 was greater than or equal to 15 dynes/cm².

The speed of the viscosity increase in the presence of 3 mm pyrophosphate and 3 mm MgCl₂ was higher in concentrated solution of myosin B than in that of native tropomysin-free myosin B. The shear stress at 0.04 sec^?1 after 6 hr at 30°C was 11.5 and 8.2 dynes/cm², respectively.

The effect of native tropomyosin and actin on the viscosity change was discussed.     

Effects of irradiance on growth,photosynthesis, and water use efficiency of seedlings of the chaparral shrub,Ceanothus megacarpus

Summary The effects of irradiance during growth on biomass allocation, growth rates, leaf chlorophyll and protein contents, and on gas exchange responses to irradiance and CO₂ partial pressures of the evergreen, sclerophyllous, chaparral shrub, Ceanothus megacarpus were determined. Plants were grown at 4 irradiances for the growth experiments, 8, 17, 25, 41 nE cm^-2 sec^-1, and at 2 irradiances, 9 and 50 nE cm^-2 sec^-1, for the other comparisons.At higher irradiances root/shoot ratios were somewhat greater and specific leaf weights were much greater, while leaf area ratios were much lower and leaf weight ratios were slightly lower than at lower irradiances. Relative growth rates increased with increasing irradiance up to 25 nE cm^-2 sec^-1 and then leveled off, while unit leaf area rates increased steeply and unit leaf weight rates increased more gradually up to the highest growth irradiance.Leaves grown at 9 nE cm^-2 sec^-1 had less total chlorophyll per unit leaf area and more per unit leaf weight than those grown at 50 nE cm^-2 sec^-1. In a reverse of what is commonly found, low irradiance grown leaves had significantly higher chlorophyll a/b than high irradiance grown leaves. High irradiance grown leaves had much more total soluble protein per unit leaf area and per unit dry weight, and they had much higher soluble protein/chlorophyll than low irradiance grown leaves.High irradiance grown leaves had higher rates of respiration in very dim light, required higher irradiances for photosynthetic saturation and had higher irradiance saturated rates of photosynthesis than low irradiance grown leaves. CO₂ compensation irradiances for leaves of both treatments were very low, <5 nE cm^-2 sec^-1. Leaves grown under low and those grown under high irradiances reached 95% of their saturated photosynthetic rates at 65 and 85 nE cm^-2 sec^-1, respectively. Irradiance saturated rates of photosynthesis were high compared to other chaparral shrubs, 1.3 for low and 1.9 nmol CO₂ cm^-2 sec^-1 for high irradiance grown leaves. A very unusual finding was that leaf conductances to H₂O were significantly lower in the high irradiance grown leaves than in the low irradiance grown leaves. This, plus the differences in photosynthetic rates, resulted in higher water use efficiencies by the high irradiance grown leaves. High irradiance grown leaves had higher rates of photosynthesis at any particular intercellular CO₂ partial pressure and also responded more steeply to increasing CO₂ partial pressure than did low irradiance grown leaves. Leaves from both treatments showed reduced photosynthetic capability after being subjected to low CO₂ partial pressures (100 bars) under high irradiances. This treatment was more detrimental to leaves grown under low irradiances.The ecological implications of these findings are discussed in terms of chaparral shrub community structure. We suggest that light availability may be an important determinant of chaparral community structure through its effects on water use efficiencies rather than on net carbon gain.     

Differential adhesion,activity, and carbohydrate: Protein ratios ofPseudomonas atlantica monocultures attaching to stainless steel in a linear shear gradient

Biofilm formation on metallic surfaces in marine and freshwater environments often precedes corrosion and other biofouling conditions. Attachment is mediated by such environmental factors as the presence of surface conditioning films, fluid dynamics, bulk-phase nutrient levels, and surface chemistry. In this study, we utilized a Fowler Cell Adhesion Measurement Module to demonstrate that the changes in cellular concentration and composition of a monoculture ofPseudomonas atlantica biofilms on stainless steel were a function of the applied shear force. At shear forces in the range of 3–10 dynes cm^–2 (1.0 liter min^–1), attachment as measured by acridine orange direct microscopic counts was greatest at the higher shear forces.¹⁴C-Acetate uptake activity on the stainless steel surfaces increased with shear stress. Acetate incorporation ranged from 1×10^–5 to 19×10^–5 mol cm^–2 between 0.15 and 30 dynes cm^–2 for 30 min uptake periods. On a per cell basis, however, activity decreased with shear, indicating a shift in metabolism. Fourier transform infrared spectroscopy revealed that protein and carbohydrate concentrations also increased with the applied shear. Increased biofilm CN ratios and total fatty acids were associated with the higher shear stresses. Neither radius of interaction nor biofilm age appeared to significantly influence the relationship between fluid shear and attachment and cellular composition ofP. atlantica biofilms in the range of 1–10 dynes cm^–2.     

Influence of glutaraldehyde fixation of cells adherent to solid substrata on their detachment during exposure to shear stress

In order to determine the response of fixed and nonfixed cells adherent to a solid substratum to shear stress, human fibroblasts were allowed to adhere and spread on either hydrophilic glass or hydrophobic Fluoroethylene-propylene (FEP-Teflon) and fixed with glutaraldehyde. Then, the cells were exposed to an incrementally loaded shear stress in a parallel plate flow chamber up to shear stresses of about 500 dynes/cm², followed by exposure to a liquid-air interface passage. The cellular detachment was compared with the one of nonfixed cells. In case of fixed cells, 50% of the adhering cells detached from FEP-Teflon at a shear stress of 350 dynes/cm², whereas 50% of the adhering, nonfixed cells detached already at a shear stress of 20 dynes/cm². No fixed cells detached from glass for shear stresses up to at least 500 dynes/cm². More than 50% of the nonfixed cells were detached from glass at a shear stress of 350 dynes/cm². Furthermore, the shape and morphology of fixed cells did not change during the incrementally loaded flow, in contrast to the ones of nonfixed cells, which clearly rounded up prior to detachment.     

Components of flow-induced dilation in rat perfused coronary artery

This study was undertaken to determine the endothelial factors involved in the flow-induced dilation of a rat perfused coronary artery. Segments of the right interventricular coronary artery were taken from 10–15-week-old male Wistar rats. Vessels were mounted in an arteriograph where internal diameter was continuously monitored while intraluminal pressure was controlled. Vessels were preconstricted with serotonin (10 mol/L), and the dilation induced by flow (0–800 l/min) was quantified. This dilator effect was measured in control conditions, after incubation with L-NAME (100 mol/L), with indomethacin (100µmol/L), and after mechanical destruction of the endothelium (–E). Dilations were expressed as percentage of the serotonin-induced constriction, and wall shear stress due to the physical forces exerted on the wall of the vessel was calculated and expressed in dyn/cm².In control conditions, raising the flow up to 800 l/min led to an increase in dilation (maximal dilation 63% ± 4%) and in sheer stress (maximal shear stress 76 ±4dyn/cm²). With indomethacin, maximal dilation was 69% ± 4% and maximal shear stress was 81 ± 6 dyn/cm². With L-NAME or after destruction of endothelium, dilation was greatly reduced (39% ± 3% and 40% ± 2%, respectively) whereas shear stress values were greatly increased (173 ± 14 and 150 ± 13 dyn/cm², respectively).These results confirm the viability of this model for the study of flow-dependent dilation. This dilation seems to be greatly dependent on NO release. In contrast, results do not favor a significant involvement of prostanoid vasodilating substance. Without endothelium, a dilation was still observed and showed the persistence of an endothelium-independent component of flow-induced dilation in this preparation that remains to be determined.Abbreviations Ach acetylcholine - BSA bovine serum albumin - EDRF endothelium-derived relaxing factor - EDHF endothelium-derived hyperpolarizing factor - L-NAME N -nitro-L-arginine-methyl ester - NO nitric oxide - PSS physiological salt solution - PGI₂ prostacyclin - 5-HT serotonin - SNP sodium nitroprusside - TXA₂ thromboxane A₂     

Atrial fibrillation pacing decreases intravascular shear stress in a New Zealand white rabbit model: implications in endothelial function

Atrial fibrillation (AF) is characterized by multiple rapid and irregular atrial depolarization, leading to rapid ventricular responses exceeding 100 beats per minute (bpm). We hypothesized that rapid and irregular pacing reduced intravascular shear stress (ISS) with implication to modulating endothelial responses. To simulate AF, we paced the left atrial appendage of New Zealand White rabbits (n = 4) at rapid and irregular intervals. Surface electrical cardiograms were recorded for atrial and ventricular rhythm, and intravascular convective heat transfer was measured by microthermal sensors, from which ISS was inferred. Rapid and irregular pacing decreased arterial systolic and diastolic pressures (baseline, 99/75 mmHg; rapid regular pacing, 92/73; rapid irregular pacing, 90/68; p < 0.001, n = 4), temporal gradients ( ${\partial\tau/\partial t}$ from 1,275 ± 80 to 1,056 ± 180 dyne/cm² s), and reduced ISS (from baseline at 32.0 ± 2.4 to 22.7 ± 3.5 dyne/cm²). Computational fluid dynamics code demonstrated that experimentally inferred ISS provided a close approximation to the computed wall shear stress at a given catheter to vessel diameter ratio, shear stress range, and catheter position. In an in vitro flow system in which time-averaged shear stress was maintained at ${{\tau_{\rm avg}} = 23 \pm 4\, {\rm dyn}\, {\rm cm}^{-2} {\rm s}^{-1}}$ , we further demonstrated that rapid pulse rates at 150 bpm down-regulated endothelial nitric oxide, promoted superoxide (O ₂ ^.? ) production, and increased monocyte binding to endothelial cells. These findings suggest that rapid pacing reduces ISS and ${\partial\tau/\partial t}$ , and rapid pulse rates modulate endothelial responses.     

The effect of divalent metals and laminar shear on the formation of large freshwater aggregates

Aquatic sediment from Hamilton Harbor were suspended under controlled Couette shear to measure the changes in particle size distribution when the bulk concentration of divalent cations Cd²⁺, Cu²⁺, Ni²⁺ and Zn²⁺ was increased 500 ppb above ambient values. The size distribution of particles followed a bimodal distribution, at diameters of 20 and 200 m, and was modeled with a curvilinear collision model, using a logarithmic size scale to compensate for the decreasing density of larger aggregates. Although collision frequencies decreased with particle size, there was a limit (160 m) above which shear no longer affected collision. Addition of divalent metals caused formation of non-porous large aggregates greater than 300 m, at shears lower than 3 dynes cm^–2. The sharp increase in aggregate volume that resulted from metal addition indicated that a partitioning threshold exists in the harbor, coinciding with an imaginary line along the shore, where wind driven agitation causes a bottom shear of 3 dynes cm^–2. This threshold can be visualized as the area near shore where bottom sediments consist of sands with nominal size greater than 250 m. Calculations, using Stoke's settling, predict settling of large aggregates near thermocline depth, coincident with the appearance of fine clays on the sediment surface.     

Particle and prey detection by mechanoreceptive copepods: a mathematical analysis

When particles move through fluids, they produce far-field pressure differences and near-field fluid deformations. Here we evaluate if a copepod, relying on mechanoreceptive antennulary setal hairs, can detect pressure changes caused by a variety of signal sources. We first provide a correction of the copepod mechanoreception model of Legier-Visser et al. (1986), showing how an object above a minimum size should be detectable. The pressure change P created by an object of this minimum size was 385 dynes/cm², based on biomechanical relationships for a rigid seta bending with respect to the exoskeletal body and using the neurophysiological detection threshold of a 10 nm bend of the sensory seta (Yen et al., 1992). The P for: a 3 m particle = 0.01 dynes/cm², a 50 m particle = 0.16 dynes/cm², an escaping nauplius = 78 dynes/cm², a revolving prey = 10^–5 dynes/cm², a 1 mm copepod escaping at 1 m/s at a distance of 1 mm from the mechanoreceptive sensory hairs of its captor = 312 dynes/cm². Only the copepod escaping at high-speed close to the captor would create a pressure difference that could elicit a response. At this point, we conclude that pressure differences are rarely of a magnitude that is perceptible and that additional information must be derived for a copepod to detect prey. Other signals include fluid deformations as well as other types of stimuli (odor, shadows). Like most organisms, a copepod will rely on all sensory modalities to find food, avoid predators, and track mates, assuring their survival in the aquatic environment. It also is possible that the biomechanical model is insufficient for estimating pressure differences causing the cuticular deformation or that further analysis is necessary to improve our certainty of the sensitivity of the copepod seta.     

Facilitation and Depression of Neuromuscular Transmission under Conditions of Blockade of Ryanodine Receptors

In our experiments on mice, end-plate currents (EPC) evoked by stimulation of the phrenic nerve were intracellularly recorded in neuromuscular synaptic junctions of the phrenic muscle. We studied the effects of a specific blocker of ryanodine receptors, ryanodine (10 to 20 M), on the amplitude and time parameters of EPC under conditions of tetanic facilitation and depression of synaptic transmission at frequencies of stimulation of 4 to 200 sec^-1. Ryanodine inhibited facilitation at stimulation frequencies of 7 to 70 sec^-1 (with maximum effect at 20 sec^-1) and accelerated depression. In the presence of ryanodine, an initial rundown of the EPC amplitude in the course of depression of transmission increased at high frequencies of stimulation (50 to 100 sec^-1), whereas the EPC amplitude at the plateau level decreased already at low frequencies (4 to 7 sec^-1). We concluded that the changes in facilitation and depression resulted from blocking of the presynaptic ryanodine receptors by ryanodine. It seems probable that calcium release from the calcium stores in murine motor terminals is a factor involved in the control of processes of transmitter secretion during short-term rhythmic activation of the junction.     

Transglutaminase stabilizes melanoma adhesion under laminar flow

To resist substantial wall shear stress (WSS) exerted by flowing blood, metastatic melanoma cells can form adhesive contacts with subendothelial extracellular matrix proteins, such as fibronectin (FN). Such contacts may be stabilized by transglutaminase catalyzed-crosslinkage of cell focal adhesion proteins. We analyzed human melanoma cell adhesion under flow by decreasing the flow (WSS) of melanoma cell suspensions and allowing them to adhere to immobilized wheat germ agglutinin or FN. At the wall shear adhesion threshold (WSAT), cell adherence was rapid with no rolling. Following cell adherence, we increased the flow and determined the wall shear detachment threshold (WSDeT). Cells spread and remained adherent on immobilized FN at high WSDeTs (≥ 32.5 dynes/cm²). The high resistance of adherent cells to shear forces suggested that transglutaminase-mediated crosslinking might be involved. Transglutaminase inhibitors monodansylcadaverine and INO-3178 decreased WSAT, and at low concentrations completely inhibited tumor cell spreading and promoted detachment at low WSDeTs (0.67 dynes/cm²). In static adhesion assays, transglutaminase inhibitors decreased cell adhesion to immobilized-FN in a dose-dependent manner and prevented the formation of crosslinked¹²⁵I-FN complex that failed to enter a SDS-polyacrylamide gradient gel. The data suggest that transglutaminase-catalyzed crosslinking, particularly in the presence of WSS, may be important in stabilizing cellular adhesive contacts during adhesion to immobilized-FN.     

Development of a new method for testing strength of cells against fluid shear stress

A new method for testing the strength of cells against fluid shear stress by using a long capillary column was proposed. The trajectories of cells in the column were simulated by introducing the Brownian motion model. The Brownian motion was performed by the generation of random numbers. The mean exposure time to shear stress and the mean shear stress acting on the surface of cells were discussed by the result of computer simulation. The mean shear stress acting on the surface of cells flowing in the capillary column was estimated as 4/3-fold of the shear stress at the column wall provided that the ratio of the cell radius to the column radius does not exceed 0.08. The effectiveness of this new method for testing the strength of cells against fluid shear stress was shown.List of Symbols a m radius of cell - c constant - E distribution function - L m length of capillary column - M number of division - N number of division - p probability - Q m³/s flow rate - R m radius of capillary column - r m radial position - t s time - T s exposure time - T _m s mean exposure time - T ₀ s mean residence time - m/s axial velocity - u _m m/s cross-sectional flow velocity - z m axial position - s^–1 shear rate - _w s^–1 shear rate at wall - Pa s viscosity - spherical coordinate - spherical coordinate - Pa shear stress - _m Pa mean shear stress - _w Pa shear stress at wall     

Human umbilical vein endothelial cells express high affinity receptors for factor Xa

The binding of [¹²⁵I]-factor Xa to human umbilical vein endothelial cell (HUVEC) monolayers was studied. At 7°C, [¹²⁵I]-factor Xa bound to a single class of binding sites with a dissociation constant value of 6.6 ± 0.8 nM and a binding site density of 57,460 ± 5,200 sites/cell (n = 3). Association and dissociation kinetics were of a pseudo-first order and gave association and dissociation rate constant values of 0.15 × 10⁶ M^-1 s^-1 and 4.0 × 10^-4 s^-1, respectively. [¹²⁵I]-factor Xa binding was inhibited by factor Xa but was not affected by factor X, thrombin or monoclonal antibodies against factor V, antithrombin-III or tissue factor pathway inhibitor (TFPI) but was inhibited by an antibody specific for the effector cell protease receptor-1 (EPR-1), a well-known receptor of factor Xa on various cell types. [¹²⁵I]-factor Xa binding to HUVEC was not affected by various inhibitors of factor Xa such as DX 9065, pentasaccharide-antithrombin-III or TFPI. Factor Xa increased intracellular free calcium levels and phosphoinositide turnover in endothelial cells and, when added to HUVEC in culture, factor Xa was a potent mitogen, stimulating an increase in cell number at a 0.3 to 100 nM concentration. HUVEC-bound factor Xa promoted prothrombin activation in the presence of factor Va only. This effect was inhibited by both indirect and direct inhibitors of factor Xa. These findings indicate that HUVEC express functional high affinity receptors for factor Xa, related to EPR-1, which may be of importance in the regulation of coagulation and homeostasis of the vascular wall. J. Cell. Physiol. 172:36–43, 1997. © 1997 Wiley-Liss, Inc.     

Factor Xa generation at the surface of cultured rat vascular smooth muscle cells in an in vitro flow system.

The purpose of the present investigation was to explore the effects of well-defined flow conditions on the activity of tissue factor (TF) expressed on the surface of cultured rat vascular smooth muscle cells. Cells were cultured to confluence on Permanox brand slides and stimulated to express TF by a 90 min incubation with fresh growth medium containing 10 percent calf serum. The stimulated cells were then placed in a parallel plate flow chamber and perfused with Hank's Balanced Salt Solution containing factor VIIa, factor X (FX), and calcium. The chamber effluent was collected and assayed for factor Xa (FXa) and the steady-state flux of FXa was calculated. The flux values were 68.73, 94.81, 139.75, 138.19, 316.82, and 592.92 fmole/min/cm2 at wall shear rates of 10, 20, 40, 80, 320, and 1280 s-1, respectively. The FXa flux depended on the wall shear rate to a greater degree than predicted by classical mass transport theory. The flux at each shear rate was three to five times less than that calculated according to the Leveque solution. These features of the experimental data imply nonclassical behavior, which may partially result from a direct effect of flow on the cell layer.     

Wall shear over high degree stenoses pertinent to atherothrombosis

Atherothrombosis can induce acute myocardial infarction and stroke by progressive stenosis of a blood vessel lumen to full occlusion. Since thrombus formation and embolization may be shear-dependent, we quantify the magnitude of shear rates in idealized severely stenotic coronary arteries (≥75% by diameter) using computational fluid dynamics to characterize the shear environment that may exist during atherothrombosis. Maximum shear rates in severe short stenoses were found to exceed 250,000 s^?1 (9500 dynes/cm²) and can reach a peak value of 425,000 s^?1 for a 98% stenosis. These high shear rates exceed typical shear used for in vitro blood flow experiments by an order of magnitude, indicating the need to examine thrombosis at very high shear rates. Pulsatility and stenosis eccentricity were found to have minor effects on the maximum wall shear rates in severe stenoses. In contrast, increases in the stenosis length reduced the maximum shear to 107,000 s^?1 (98% stenosis), while surface roughness could increase focal wall shear rates to a value reaching 610,000 s^?1 (90% stenosis). The “shear histories” of circulating platelets in these stenoses are far below reported activation thresholds. Platelets may be required to form bonds in 5 μs and resist shear forces reaching 8000 pN per platelet. Arterial thrombosis occurs in the face of pathological high shear stress, creating rapid and strong bonds without prior activation of circulating platelets.     

Kinetics of the low pH decolorization of azurin

Reaction rates were measured for the low pH-induced Cu ligand modification of azurins from Pseudomonas aeruginosa and Alcaligenes faecalis. Loss of the intense absorption band at 625 nm obeyed a rate law:

where Az is the concentration of azurin in its native oxidized form possessing the 625 nm band. For Pseudomonas aeruginosa at 25°C, n = 1 and k = 4.0 × 10^-2 sec^-1 M^-1 in citrate buffer but 1.2 × 10^-2 sec^-1 M^-1 in phosphate buffer. For Alcaligenes faecalis, n = 3 and k = 1.5 × 10⁴ sec^-1 M^-3 in citrate and 2.6 × 10³ sec^-1 M^-3 in phosphate. In equilibrium experiments on Alcaligenes faecalis azurin in citrate buffer, the pH-dependent change to the low pH form exhibited an apparent transition pK of 3.1. The form of the rate law implies a mechanistic scheme that contains fast equilibrium protonation steps prior to a rate limiting ligand rearrangement.     

利用转录组测序筛选低切应力作用下人脐静脉内皮细胞的差异表达基因

目的:通过转录组测序分析获得不同切应力作用下人脐静脉内皮细胞的基因的表达谱,为进一步探索切应力影响内皮细胞形态和功能的机制提供依据。方法:以人脐静脉内皮细胞为材料,通过Streamer系统建立6通道可调控切应力的流体动力学细胞模型,以层流切应力(15 dynes/cm~2)为对照,以低切应力(0.1 dynes/cm~2)为实验组,分别加载细胞18 h。提取总RNA逆转录合成cDNA,建立文库,以二代测序平台Illumina HiSeq中进行扩增和测序。结果:序列比对结果显示,有19986个基因比对上,新转录本分析显示各组新转录本数约占总转录本数的50%。基因表达差异分析显示,较对照组,低切应力组表达上调基因983个,表达下调基因701个。GO分析显示,有18499个基因得到了归类注释,绝大多数基因富集到生物学过程。KEGG分析显示,富集Top20的信号通路与细胞周期、DNA复制和细胞分裂、细胞应激和凋亡等生物学过程相关。结论:低切应力作用不仅仅激活内皮细胞中细胞的增殖相关基因,同时也涉及到DNA损伤修复和凋亡相关基因。