Americanist Archaeologies: 2008 in Review

ABSTRACT   A review of published literature, conference proceedings, and Internet sources pertaining to "Americanist archaeology" in 2008 reveals three major themes: conflict, catastrophe, and collaboration. Scholars debated the role of archaeology in planning for and executing military operations in the Middle East while maintaining a vigorous interest in structural and physical violence worldwide. Environmental archaeologists considered the effects of catastrophic events, including new theories over the demise of Clovis cultures. In addition, several major reports and regulations highlighted the complexities of indigenous relations and gender equity in the profession. Enhanced technologies, funding for global initiatives in human rights, economic and environmental sustainablility, and creative forms of engagement are reshaping "Americanist archaeology" as a democratic, anthropological, and relevant pursuit. [Keywords: archaeology, annual review, conflict, catastrophe, collaboration]     

From Casta to Californio: Social Identity and the Archaeology of Culture Contact

In culture contact archaeology, studies of social identities generally focus on the colonized–colonizer dichotomy as the fundamental axis of identification. This emphasis can, however, mask social diversity within colonial or indigenous populations, and it also fails to account for the ways that the division between colonizer and colonized is constructed through the practices of colonization. Through the archaeology of material culture, foodways, and architecture, I examine changing ethnic, racial, and gendered identities among colonists at El Presidio de San Francisco, a Spanish-colonial military settlement. Archaeological data suggest that military settlers were engaged in a double material strategy to consolidate a shared colonial identity, one that minimized differences among colonists and simultaneously heightened distinctions between colonists and local indigenous peoples.     

Research project: A history of health in Europe from the late Paleolithic era to the present

This article briefly describes a large, multidisciplinary research project that combines skeletal data in Europe over the past 10,000 years with information from sources in history, archaeology, geography and climate history to measure and analyze important aspects of human health. Over this era human health was significantly affected by climate change, the rise of settled agriculture, urbanization, new technologies, global exploration and colonization, and industrialization.     

Research project: A history of health in Europe from the late Paleolithic era to the present

This article briefly describes a large, multidisciplinary research project that combines skeletal data in Europe over the past 10,000 years with information from sources in history, archaeology, geography and climate history to measure and analyze important aspects of human health. Over this era human health was significantly affected by climate change, the rise of settled agriculture, urbanization, new technologies, global exploration and colonization, and industrialization.     

Nestedness in island faunas: novel insights into island biogeography through butterfly community profiles of colonization ability and migration capacity

Aim To relate variation in the migration capacity and colonization ability of island communities to island geography and species island occupancy. Location Islands off mainland Britain and Ireland. Methods Mean migration (transfer) capacity and colonization (establishment) ability (ecological indices), indexed from 12 ecological variables for 56 butterfly species living on 103 islands, were related to species nestedness, island and mainland source geography and indices using linear regression models, RLQ analysis and fourth‐corner analysis. Random creation of faunas from source species, rank correlation and rank regression were used to examine differences between island and source ecological indices, and relationships to island geography. Results Island butterfly faunas are highly nested. The two ecological indices related closely to island occupancy, nestedness rank of species, island richness and geography. The key variables related to migration capacity were island area and isolation; for colonization ability they were area, isolation and longitude. Compared with colonization ability, migration capacity was found to correlate more strongly with island species occupancy and species richness. For island faunas, the means for both ecological indices decreased, and variation increased, with increasing island species richness. Mean colonization ability and migration capacity values were significantly higher for island faunas than for mainland source faunas, but these differences decreased with island latitude. Main conclusions The nested pattern of butterfly species on islands off mainland Britain and Ireland relates strongly to colonization ability but especially to migration capacity. Differences in colonization ability among species are most obvious for large, topographically varied islands. Generalists with abundant multiple resources and greater migration capacity are found on all islands, whereas specialists are restricted to large islands with varied and long‐lived biotopes, and islands close to shore. The inference is that source–sink dynamics dominate butterfly distributions on British and Irish islands; species are capable of dispersing to new areas, but, with the exception of large and northern islands, facilities (resources) for permanent colonization are limited. The pattern of colonization ability and migration capacity is likely to be repeated for mainland areas, where such indices should provide useful independent measures for assessing the conservation status of faunas within spatial units.     

Testing Evolutionary and Dispersion Scenarios for the Settlement of the New World

Background

Discussion surrounding the settlement of the New World has recently gained momentum with advances in molecular biology, archaeology and bioanthropology. Recent evidence from these diverse fields is found to support different colonization scenarios. The currently available genetic evidence suggests a “single migration” model, in which both early and later Native American groups derive from one expansion event into the continent. In contrast, the pronounced anatomical differences between early and late Native American populations have led others to propose more complex scenarios, involving separate colonization events of the New World and a distinct origin for these groups.

Methodology/Principal Findings

Using large samples of Early American crania, we: 1) calculated the rate of morphological differentiation between Early and Late American samples under three different time divergence assumptions, and compared our findings to the predicted morphological differentiation under neutral conditions in each case; and 2) further tested three dispersal scenarios for the colonization of the New World by comparing the morphological distances among early and late Amerindians, East Asians, Australo-Melanesians and early modern humans from Asia to geographical distances associated with each dispersion model. Results indicate that the assumption of a last shared common ancestor outside the continent better explains the observed morphological differences between early and late American groups. This result is corroborated by our finding that a model comprising two Asian waves of migration coming through Bering into the Americas fits the cranial anatomical evidence best, especially when the effects of diversifying selection to climate are taken into account.

Conclusions

We conclude that the morphological diversity documented through time in the New World is best accounted for by a model postulating two waves of human expansion into the continent originating in East Asia and entering through Beringia.     

试论动物考古中的小哺乳动物研究

小哺乳动物种类及其数量,在哺乳动物中占据大多数。它们是自然界生态链中非常重要的、不可缺少的环节。它们体质进化较快,大部分种类居住区域选择性强,种群活动范围比较小。所以研究小哺乳动物种群面貌及其生态特征,可以帮助我们判断古遗址相对时代,解析历史时期的生态演变。小哺乳动物的生态指示性,能够帮助我们准确复原和研究古遗址环境背景。它们的分布状况及很多生态规律,在帮助我们研究古遗址环境卫生及古居民住房条件等方面有独特作用。小哺乳动物种群变化与人类经济生产的互动性,以及它们与人类的伴栖关系、人类对小哺乳动物资源的开发和利用等,均是动物考古工作中应该重视和积极开展研究的内容。开展小哺乳动物研究,需要必要的工作计划、专业技术和实验设备。我国旧石器时代的小哺乳动物考古已取得丰硕成果,新石器时代及其以后的小哺乳动物考古尚有待加强。小哺乳动物研究工作的拓展,将会有力促进动物考古学进展,促使动物考古在考古学实践中发挥出更大作用。     

After Last Glacial Maximum: The third migration

A critical analysis of “Real World” data concerning the genetic origins of people, archaeology and palaeoclimatic conditions, demonstrates possibilities of population migration for third time in ancient history, from East to West after Last Glacial Maximum (LGM), which gave the foundations of modern human civilization.     

Concurrent niche and neutral processes in the competition-colonization model of species coexistence

The importance of neutral dynamics is contentiously debated in the ecological literature. This debate focuses on neutral theory's assumption of fitness equivalency among individuals, which conflicts with stabilizing fitness that promotes coexistence through niche differentiation. I take advantage of competition-colonization trade-offs between species of aquatic micro-organisms (protozoans and rotifers) to show that equalizing and stabilizing mechanisms can operate simultaneously. Competition trials between species with similar colonization abilities were less likely to result in competitive exclusion than for species further apart. While the stabilizing mechanism (colonization differences) facilitates coexistence at large spatial scales, species with similar colonization abilities also exhibited local coexistence probably due to fitness similarities allowing weak stabilizing mechanisms to operate. These results suggest that neutral- and niche-based mechanisms of coexistence can simultaneously operate at differing temporal and spatial scales, and such a spatially explicit view of coexistence may be one way to reconcile niche and neutral dynamics.     

Domesticating Imperialism: Sexual Politics and the Archaeology of Empire

ABSTRACT  The archaeology of empire is permeated by sexual narratives. This has been especially true of archaeological research on the Spanish Americas, where the material remains of colonial settlements have often been interpreted as products of a literal and figurative marriage between two cultures. However, investigating colonization as a consensual domestic arrangement has masked the ways in which imperial projects relied on the exercise of power, including sexual regulations and sexual coercion. Recent archaeological and ethnohistoric research at the Spanish-colonial military settlement of El Presidio de San Francisco affords a different perspective, one in which the public and institutional exercise of sexual control was central to the imperial project.     

Spatial patterns of coexistence of competing species in patchy habitat

The single-species spatially realistic patch occupancy metapopulation model is, in this study, extended to a metacommunity of many competing species. Competition is assumed to reduce the local carrying capacity (effective patch area), which in turn increases local extinction rates and reduces colonization rates because of smaller population sizes. Each species is described by three parameters: pre-competitive abundance (equilibrium incidence of patch occupancy, which reflects the rate of colonization in relation to extinction rate), the spatial range of migration, and competitive ability. The model ignores spatio–temporal correlations caused by interspecific interactions, because in metacommunities of unequal competitors inhabiting heterogeneous landscapes, correlations in the occurrence of species are driven more by patch heterogeneity than by competition. The model allows the calculation of multispecies equilibria in patchy habitats without simulations. In general, the number of coexisting species in the metacommunity increases with decreasing strength of competition, increasing rate of colonization, and decreasing range of migration. Habitat heterogeneity in the form of spatial variation in patch areas tends to facilitate coexistence. Poor competitors may coexist with superior competitors in the patch network if the former have higher colonization rates (competition–colonization trade-off). When migration distances are short, competition leads to spatial pattern formation: Species tend to have restricted spatial distributions in the network, but contrary to intuitive expectations, often the distributions of many species are nested. Having more dispersive species enhances both local and global diversity, whereas more local migration decreases local but increases global diversity.     

How fast and far might tree species migrate in the eastern United States due to climate change?

Aim We describe and use a model, SHIFT, to estimate potential migration due to climate change over the next 100 years. Location Eastern United States. Methods Five species, currently confined to the eastern half of the United States and not extending into Canada, were used to assess migration potential: Diospyros virginiana (persimmon), Liquidambar styraciflua (sweetgum), Oxydendrum arboreum (sourwood), Pinus taeda (loblolly pine), and Quercus falcata var. falcata (southern red oak). SHIFT is a matrix simulation model using simple inverse power functions to provide a distance decay of seed dispersal and is driven primarily by the abundance of the species near the boundary, the forest density within and beyond the boundary, and the distance between cells. For each cell outside the current boundary, the model creates an estimate of the probability that each unoccupied cell will become colonized over a period of 100 years. SHIFT is a ‘fat‐tailed’ migration model that allows rare very long distance dispersal events and colonization could occur up to 500 km beyond the current distribution boundary. Model outputs were analysed using transects through sections showing relatively low and high colonization probabilities as a result of low and high densities of target trees (high source strength) as well as high densities of forest (high sink strength). We also assess migration potential for species by concentric rings around the current boundary. Results Model outputs show the generally limited nature of migration for all five species over 100 years. There is a relatively high probability of colonization within a zone of 10–20 km (depending on habitat quality and species abundance) from the current boundary, but a small probability of colonization where the distance from the current boundary exceeds about 20 km. Whether biologically plausible or not, rare very long distance migration events are not sufficient to rescue migration. Species abundance (the source strength of migration) near the range boundary carried relatively more influence than percentage forest cover (sink strength) in determining migration rates. Main conclusion The transect evaluation revealed the importance of abundance of the species near the boundary, indicating that rare species may have much more difficulty in unassisted northward migration due to climate change. The concentric rings analysis of the model outputs showed that only the first 10–20 km of area would have a reasonably high probability of colonization. Rare, long‐distance events permit colonization of remote outliers, but much more needs to be understood about the likelihood of these rare events to predict the frequency of outlier establishment.     

How ready are we to move species threatened from climate change? Insights into the assisted colonization debate from Australia

Assisted colonization, the intentional movement of species beyond their native range, has been proposed as a climate change adaptation tool for biodiversity conservation. The risks and benefits of its implementation are still being debated but already the climate is changing, species are moving and the pressure on at‐risk species must therefore be increasing. However, instances where moving species beyond their natural range purely for conservation purposes due to climate change are few, and the opportunity for science to inform practice is limited. Here we survey active participants in flora translocations and/or flora conservation in Australia in order to investigate the gap between theoretical and conceptual ideas about assisted colonization and to gauge preparedness for its implementation. We found that actions that mitigate proximal threats are preferred over those that move species beyond their current range. A lack of knowledge of species biology and ecology is an impediment to the acceptance of assisted colonization. In addition, prohibitive costs and the potential increased risk of the spread of diseases, pests and/or pathogens are viewed as more important obstacles of successful assisted colonization than potential for invasion at the recipient site. Full approval from all stakeholders at the source and recipient sites was found to be the most important factor for the successful assisted colonization of flora.     

Mathematical models of cell colonization of uniformly growing domains

During the development of vertebrate embryos, cell migrations occur on an underlying tissue domain in response to some factor, such as nutrient. Over the time scale of days in which this cell migration occurs, the underlying tissue is itself growing. Consequently cell migration and colonization is strongly affected by the tissue domain growth. Numerical solutions for a mathematical model of chemotactic migration with no domain growth can lead to travelling waves of cells with constant velocity; the addition of domain growth can lead to travelling waves with nonconstant velocity. These observations suggest a mathematical approximation to the full system equations, allowing the method of characteristics to be applied to a simplified chemotactic migration model. The evolution of the leading front of the migrating cell wave is analysed. Linear, exponential and logistic uniform domain growths are considered. Successful colonization of a growing domain depends on the competition between cell migration velocity and the velocity and form of the domain growth, as well as the initial penetration distance of the cells. In some instances the cells will never successfully colonize the growing domain. These models provide an insight into cell migration during embryonic growth, and its dependence upon the form and timing of the domain growth.     

Pervasive migration across rainforest and sandy coastal plain Aechmea nudicaulis (Bromeliaceae) populations despite contrasting environmental conditions

Understanding the colonization of extreme marginal habitats and the relative roles of space and environment in maintaining peripheral populations remains challenging. Here, we leverage a system of pairs of rainforest and sandy coastal plain communities that allow us to decouple spatial and environmental effects in the population structure and migration rates of the bromeliad Aechmea nudicaulis. Structure and gene flow between populations were estimated from Bayesian clustering and coalescent‐based migration models applied to chloroplast sequence and nuclear microsatellite data. Contrary to our initial expectation, the sharp environmental gradient between rainforest and sandy plains does not seem to have affected the colonization and migration dynamics in A. nudicaulis. Our analyses uncover pervasive gene flow between neighbouring habitats in both chloroplast and nuclear data despite the striking differences in environmental conditions. This result is consistent with a scenario of repeated colonization of the sandy coastal plains from forest populations through seed dispersal, as well as the maintenance of gene flow between habitats through pollination. We also recovered a broad north/south population structure that has been found in other Atlantic rainforest groups and possibly reflects older phylogeographic dynamics.     

Early gonadogenesis in Columba livia (birds: Columbiformes): Migration,colonization, and differentiation of germ cells

In birds, primordial germ cells (PGCs) use the bloodstream to travel to a specific region, where the cells undergo extravasation followed by intrastromal migration to the gonadal crest for further colonization. Currently, DDX4, SSEA1, and Oct4 are used to identify germ cells. Other germline cell-associated molecules are N-cadherin, GnRHR, and 3β hydroxysteroid dehydrogenase (3βHSD), which have been used in mice and birds during gonadal development; however, its role in early gonadogenesis in birds is poorly described. This study aimed to evaluate the differential immunodetection of N-cadherin binding molecule, Oct4 pluripotency protein, GnRHR receptor, and 3βHSD enzyme in Columba livia embryos during migration colonization of PGCs in the gonadal crest and early gonadogenesis. These markers were revealed by immunohistochemistry in histological preparations of C. livia corresponding to stages (S)15 to S40. Immunodetection of N-cadherin, Oct4, GnRHR, and 3βHSD in the germ line of C. livia allowed the identification of PGCs in the yolk sac membrane at the level of the splanchnic mesoderm during migration to the genital crest and its colonization. In the same way, it was possible to characterize and localize PGCs during early gonadogenesis. This study in C. livia demonstrates that Oct4, N-cadherin, GNRHR, and 3βHSD are immunodetected in PGCs and could be used as potential germline cell markers during cell migration out of blood vessels, colonization in the genital crest, and early gonadogenesis. Furthermore, this study could be used as a novel general model to understand the early gonadogenesis in altricial species.     

Exploring tree species colonization potentials using a spatially explicit simulation model: implications for four oaks under climate change

Climate change impacts tree species differentially by exerting unique pressures and altering their suitable habitats. We previously predicted these changes in suitable habitat for current and future climates using a species habitat model (DISTRIB) in the eastern United States. Based on the accuracy of the model, the species assemblages should eventually reflect the new quasi‐equilibrium suitable habitats (~2100) after accounting for the lag in colonization. However, it is an open question if and when these newly suitable habitats will be colonized under current fragmented landscapes and realistic migration rates. To evaluate this, we used a spatially explicit cell‐based model (SHIFT) that estimates colonization potentials under current fragmented habitats and several estimates of historical migration rates at a 1 km resolution. Computation time, which was previously the biggest constraint, was overcome by a novel application of convolution and Fast Fourier Transforms. SHIFT outputs, when intersected with future suitable habitats predicted by DISTRIB, allow assessment of colonization potential under future climates. In this article, we show how our approach can be used to screen multiple tree species for their colonization potentials under climate change. In particular, we use the DISTRIB and SHIFT models in combination to assess if the future dominant forest types in the north will really be dominated by oaks, as modelled via DISTRIB. Even under optimistic scenarios, we conclude that only a small fraction of the suitable habitats of oaks predicted by DISTRIB is likely to be occupied within 100 years, and this will be concentrated in the first 10–20 km from the current boundary. We also show how DISTRIB and SHIFT can be used to evaluate the potential for assisted migration of vulnerable tree species, and discuss the dynamics of colonization at range limits.     

Genetic and phylogenetic consequences of island biogeography

Abstract.— Island biogeography theory predicts that the number of species on an island should increase with island size and decrease with island distance to the mainland. These predictions are generally well supported in comparative and experimental studies. These ecological, equilibrium predictions arise as a result of colonization and extinction processes. Because colonization and extinction are also important processes in evolution, we develop methods to test evolutionary predictions of island biogeography. We derive a population genetic model of island biogeography that incorporates island colonization, migration of individuals from the mainland, and extinction of island populations. The model provides a means of estimating the rates of migration and extinction from population genetic data. This model predicts that within an island population the distribution of genetic divergences with respect to the mainland source population should be bimodal, with much of the divergence dating to the colonization event. Across islands, this model predicts that populations on large islands should be on average more genetically divergent from mainland source populations than those on small islands. Likewise, populations on distant islands should be more divergent than those on close islands. Published observations of a larger proportion of endemic species on large and distant islands support these predictions.     

Secretive marsh bird habitat relationships at mid-continent spring migration stopover sites

Despite several secretive marsh bird (SMB) species being listed as critically imperiled throughout the mid-continent of North America, limited information on SMB distribution and habitat use within primary migratory corridors results in uncertainty on contributions of wetlands in mid-latitude states toward their annual cycle needs. Our objectives were to quantify temporal patterns of SMB wetland occupancy during spring migration at a mid-latitude state and evaluate the relationships between SMB colonization probability and water-level management practices, and the resulting habitat conditions during spring migration. We conducted a 2-year, dynamic occupancy study (2013–2014) that included 6 rounds of repeated call-back surveys to detect the presence of 5 SMB species (i.e., Virginia rail [Rallus limicola], sora [Porzana carolina], king rail [R. elegans], least bittern [Ixobrychus exilis], and American bittern [Botaurus lentiginosus]) during spring (Apr–Jun) on 107 wetlands across 8 conservation areas and 4 national wildlife refuges throughout Missouri, USA. We detected sora most frequently, followed by least bittern, American bittern, Virginia rail, and king rail. Coefficient estimates indicated colonization probability for all species was positively associated with emergent vegetation cover and negatively associated with amount of open water. Open water was the only variable in the best supported model explaining American bittern site colonization, to which they were negatively associated. Virginia rail colonization had a strong positive association with vegetation height, whereas least bittern and sora site colonization were influenced positively by water depth and agriculture, respectively. Based on the habitat associations within and among SMB species identified in this study, wetland managers can tailor management strategies to optimize spring migration habitat for single- or multi-species objectives.     

Modeling colonization rates over time: Generating null models and testing model adequacy in phylogenetic analyses of species assemblages*

A central theme connecting macroevolutionary processes to macroecological patterns is the shaping of regional biodiversity over time through speciation, extinction, migration, and range shifts. The use of phylogenies to explore the dynamics of diversification due to variation in speciation and extinction rates has been well-developed and there are established methods for inferring speciation times from phylogenies and generating its null distributions (as represented by node heights on molecular phylogenies). But inferring colonization events from phylogenies is more challenging. Unlike speciation events, represented by nodes, colonization events could occur at any point along a branch connecting species in the assemblage to the regional pool. We account for uncertainty in identification of colonization lineages and timing of colonization events by using an efficient analytical solution to inferring the distribution of colonization times from an assemblage phylogeny. Using the same solution, we efficiently derive the null distribution of colonization times, which provides us with a general approach to testing the adequacy of a model to describe colonization events into the assemblage. We illustrate this approach by demonstrating how the movement of squamate lineages into Madagascar has been uneven over time, peaking in the early Cenozoic when ocean conditions favored colonization.