Species constancy depends on plot size – a problem for vegetation classification and how it can be solved

Question: While it is well known that species richness depends on plot size, it is not generally recognised that the same must be true for constancy. Accordingly, many authors use varying plot sizes when classifying vegetation based on the comparison of constancies between groups of plots. We ask whether the constancy‐area relationship follows a general rule, how strong the effect of plot sizes is on constancies, and if it is possible to correct constancies for area. Location: For empirical evaluation, we use data from plant communities in the Czech Republic, Sweden and Russia. Methods: To assess the potential influence of differences in plot size on constancies, we develop a mathematical model. Then, we use series of nested plot species richness data from a wide range of community types (herbaceous and forest) to determine the parameters of the derived function and to test how much the shape of the constancy‐area relationship depends on taxa or vegetation types. Results: Generally, the constancy‐area relationship can be described by C (A)=1?(1?C₀)^{(A/A0)^d}, with C being constancy, A area, C₀ known constancy on a specific area A₀, and d a damping parameter accounting for spatial autocorrelation. As predicted by this function, constancies in plant communities always varied from values near 0% to near 100% if plot sizes were changed sufficiently. For the studied vegetation types, a two‐ to fourfold increase in plot size resulted in a change of conventional constancy classes, i.e. an increase of constancy by 20% or more. Conclusions: Vegetation classification, which largely relies on constancy values, irrespective of whether traditional or modern fidelity definitions are used, is strongly prone to distorting scale effects when relevés of different plot sizes are combined in studies. The constancy‐area functions presented allow an approximate transformation of constancies to other plot sizes but are flawed by idiosyncrasies in taxa and vegetation types. Thus, we conclude that the best solution for future surveys is to apply uniform plot sizes within a few a priori delimited formations and to determine diagnostic species only within these formations. Finally, we suggest that more detailed analyses of constancy‐area relationships can contribute to a better understanding of species‐area relationships because the latter are the summation of the first for all species.     

中国植物新分类群、新名称2020年度报告

2020年中国共发表高等植物新分类群359个, 其中新属21个、新种312个、新亚种6个、新变种14个、新变型6个; 发表新组合(等级) 217个, 新名称11个; 发表国家级新记录48个; 将85个名称处理为65个名称的异名; 对14个名称进行了应用订正; 新指定后选(新)模式物种147个; 还新发现多年未曾发现的物种2个, 排除物种分布3个。新发表的物种中, 苔类植物门有3个、藓类植物门3个、蕨类植物门6个、裸子植物门1个新杂交种、被子植物门299个。这些新物种中, 有86个发表的同时提供了详细的分子证据, 78个在发表时就依据IUCN标准被评估处于受威胁的状态。云南、西藏、广西和四川等西南4省区发表新物种最多, 占全国新物种发表总数的2/3; 新物种发现密度最高的省级行政单位是云南、海南、台湾、广西和浙江等省区; 墨脱县是新物种发现数量最多的县级行政单位。2020年中国高等植物净新增294个分类群, 占全国总数的0.79%, 313个高等植物名称发生变动, 占全国总数的0.84%。     

中国鳞翅目新物种2020年度报告

本文总结了2020年国内外学者发表的中国鳞翅目新分类单元的情况。经过统计, 2020年中国共发表鳞翅目新分类群196个, 其中新属1个, 新种190个, 新亚种5个; 发表国家级新记录71个; 发表新组合55个; 将11个名称处理为9个名称的异名; 新种(亚种)分别隶属于23个科。海南和云南两省发表的新物种数明显高于其他地区, 占全国新物种发表总数的2/5; 新记录种发表最多的地区为云南, 占全国新记录种总数的约1/2。整体来看, 我国南方新物种和新记录种发表数量明显高于北方。     

中国新记录巴克斯霉属Backusella的两个分类单元(英文)

最近在中国十个省市发现了一个新记录属——巴克斯霉属Backusella,包括一个种的两个变种,即卷曲巴克斯霉原变种B.circina var.circina和卷曲巴克斯霉改级光孢变种B. circina var. lamprospora stat. nov. ≡ B. lamprospora。文章对这两个变种提供了形态描述和线条图,还提供了属内区分所有可以承认的分类群的检索表。把这两个分类群从种级降为变种级的理由亦有所讨论。ITS rDNA序列分析表明,卷曲巴克斯霉是一个多系类群,与放射毛霉属Actinomucor、毛霉属Mucor和根毛霉属Rhizomucor有着密切的谱系关系。这一结果暗示目前的卷曲巴克斯霉种的概念较大,可称为广义卷曲巴克斯霉B.circina s.l.;如果仅仅依靠分子数据,很有可能给出错误的分类学鉴定结果。     

Statistical determination of diagnostic species for site groups of unequal size

Aim: Concentration of species occurrences in groups of classified sites can be quantified with statistical measures of fidelity, which can be used for the determination of diagnostic species. However, for most available measures fidelity depends on the number of sites within individual groups. As the classified data sets typically contain site groups of unequal size, such measures do not enable a comparison of numerical fidelity values of species between different site groups. We therefore propose a new method of measuring fidelity with presence/absence data after equalization of the size of the site groups. We compare the properties of this new method with other measures of statistical fidelity, in particular with the Dufrêne‐Legendre Indicator Value (IndVal) index. Methods: The size of site groups in the data set is equalized, while relative frequencies of species occurrence within and outside of these groups are kept constant. Then fidelity is calculated using the phi coefficient of association. Results: Fidelity values after equalization are independent of site group size, but their numerical values vary independently of the statistical significance of fidelity. By changing the size of the target site group relative to the size of the entire data set, the fidelity measure can be made more sensitive to either common or rare species. We show that there are two modifications of the IndVal index for presence/absence data, one of which is also independent of the size of site groups. Conclusion: The phi coefficient applied to site groups of equalized size has advantages over other statistical measures of fidelity based on presence/absence data. Its properties are close to an intuitive understanding of fidelity and diagnostic species in vegetation science. Statistical significance can be checked by calculation of another fidelity measure that is a function of statistical significance, or by direct calculation of the probability of observed species concentrations by Fisher's exact test. An advantage of the new method over IndVal is its ability to distinguish between positive and negative fidelity. One can also weight the relative importance of common and rare species by changing the equalized size of the site groups.     

Floristic division of the Arctic

Abstract: The progress in the floristic study of the circumpolar Arctic since the 1940s is summarized and a new floristic division of this region is presented. The treeless areas of the North Atlantic and North Pacific with an oceanic climate, absence of permafrost and a very high proportion of boreal taxa are excluded from the Arctic proper. It is argued that the Arctic deserves the status of a floristic region. The tundra zone and some oceanic areas are divided into subzones according to their flora and vegetation. Two groups of subzones are recognized: the Arctic group (including the Arctic tundras proper and the High Arctic) and the Hypoarctic group. The Arctic phytochorion is floristically divided into sectors: 6 provinces and 20 subprovinces reflecting the regional features of each sector in connection with flora history, physiography and continentality-oceanity of the climate. Each sector is described and differentiated by a set of differential and co-differential species. The peculiarities of the Arctic flora are manifest in different ways in the various sectors, and endemism is not the universal criterion for subdivision.     

中国鳞翅目新物种2021年年度报告

本文总结了2021年国内外学者发表的中国鳞翅目新分类单元的情况。经过统计, 2021年共发表与中国鳞翅目物种相关的论文104篇, 专著1部, 涉及新分类群230个, 其中新属7个, 新种215个, 新亚种8个; 发表中国新记录属9个、中国新记录种78个(包括2亚种)、新组合31个; 提出4个种的异名, 2个种被赋予新名。新种(亚种)隶属于34科。云南省发表的新物种数和新记录物种数明显高于其他地区, 分别占全国发表总数的36.8%和39.7%。2021年我国南方新物种和新记录种发表数量仍然显著高于北方。     

Patterns in the species composition of fish assemblages among Wisconsin streams

Synopsis To better understand patterns of fish assemblage composition in Wisconsin streams in relation to major environmental gradients, I carried out multivariate direct gradient analysis (canonical correspondence analysis) of two large independent datasets on fish species abundance in Wisconsin streams. Analysis of the two datasets yielded similar results, suggesting that observed patterns and relationships were real. Stream sites were distributed along fish species-environment gradients, but segregation into distinct stream temperature and geographic groups was also evident. The strongest gradient in both datasets was related to summer water temperature patterns, and encompassed a transition from small, coldwater streams dominated by salmonids, cottids, certain cyprinids, and few other species, to both small and large, warmwater streams dominated by a high diversity of different cyprinids, catostomids, ictalurids, centrarchids, and percids. A second gradient in both datasets was complex but largely geographic. Within it, sites from each of the four ecoregions that occupy Wisconsin formed fairly discrete groups. The strongest differences were between sites in the two southern Wisconsin ecoregions, the Driftless Area and the Southeastern Wisconsin Till Plains, that were dominated by certain cyprinids, ictalurids, and centrarchids, and sites in the two northern Wisconsin ecoregions, the North Central Hardwood Forests and the Northern Lakes and Forests, that were dominated by a different set of cyprinids and ictalurids, plus some petromyzontids, salmonids, catostomids, and percids. Sites from the Driftless Area that were mostly higher-gradient (steep stream slope) and had many riffle-dwelling species could also be distinguished from sites in the Southeastern Wisconsin Till Plains that were mostly lower-gradient and had many pool-dwelling species. The patterns of fish assemblage composition among sites and the associated fish species-environment relationships that were revealed by the analyses provided a framework for developing an ecologically meaningful hierarchical classification of Wisconsin stream sites based on stream thermal regime, ecoregion, stream size, and stream gradient.     

枸杞属(茄科)新类群杂交起源初探

为探讨枸杞属新类群的起源及国产枸杞属植物的亲缘关系,该文使用核基因颗粒性结合淀粉合成酶基因(GBSSI)片段,对国产7个类群的枸杞属植物进行了分子系统学研究.结果表明:中国分布的枸杞属植物属于旧世界类群并分为4个强烈支持的分支,而新类群的形成与杂交密切相关.此外,初步分析还显示宁夏枸杞有较高的遗传分化.     

A new classification of the forests of the Muniellos Biological Reserve in Northwest Spain

By means of a cluster analysis, we classified 135 relevés of the forests of the Muniellos Reserve into 8 groups and the species in these relevés into 28 groups. The concentration analysis applied allows to study the relationship between relevé group and species group. The forest types in Muniellos Reserve are: mixed riverside forest, mixed forest with hazel, semideciduous pyrenean oak forest, xerophilous and mesophilous sessile oak forest, beech forest and open and thick birch forest. These forest types are characterized floristically, structurally and ecologically. The pattern of distribution of forest types in the Muniellos Reserve is also discussed; in the siliceous areas of the Orocantabric province this pattern is widespread, but differes to some extent from the accepted pattern.     

Descriptions of new taxa of the Clausiliidae from Turkey (Mollusca: Stylommatophora)

Summary

Several new taxa of the Clausiliidae were described From Turkey: Dobatia multidentifera n. sp., Albinaria monocristata n. sp., Albinaria basalifera n. sp., Roseniella (Chavchetia) n. subgen., Roseniella (Chavchetia) rufina n. sp., Armenica euprepes truncata n. ssp., Armenica multispirata n. sp., Armenica bicarinata grisea n. ssp., Kazancia n. gen., and Kazancia monticola n. sp. Investigations were made of the genital morphology of some species, and the arrangement of the taxa in Nordsieck’s classification (H, NORDSIECK 1979) is discussed.     

A phytosociological survey of the boreal forest (shape Vaccinio-Piceetea) in North America

A survey of syntaxa of vegetation of North American boreal forests (class Vaccinio-Piceetea) is presented. This phytosociological survey, carried out combining the Braun-Blanquet method with numerical syntaxonomical analyses (cluster and correspondence analysis), describes the associations of the North American boreal forests, which have several species, varieties or vicariant species in common with their Eurasian counterparts, and can be placed in the class Vaccinio-Piceetea. By means of tabular and multivariate analyses, 2084 North American relevés were compared with 3273 relevés from European, Japanese and Korean boreal forest, to describe and typify 4 orders, 10 alliances and 37 associations. Diagnostic tables, ordination, clustering, and climatic, edaphic and biogeographical data were used to show floristic affinities among these syntaxa and interpret their distribution areas. Syntaxa were briefly characterized by their floristic composition, physiognomy, succession, zonation, and biogeographical distribution.     

A new set of microsatellite markers for the peach palm (Bactris gasipaes Kunth); characterization and across‐taxa utility within the tribe Cocoeae

A (GA)_n microsatellite‐enriched library was constructed and a new set of 18 nuclear simple sequence repeat loci was isolated in Bactris gasipaes var. gasipaes. The loci were found to be highly variable in the target species and readily transferable to related Bactris species as well as to the Astrocaryum and Elaeis genera of the same Cocoeae tribe. These microsatellite resources are made available to study the genetic diversity and gene flow within the Bactris complex for a better understanding of the domestication process of the peach palm and for further Cocoeae genetics.     

中国半翅目等29目昆虫2020年新分类单元

以中国半翅目等29目昆虫类群(除鞘翅目、双翅目、鳞翅目、膜翅目之外的其他目)为研究对象, 基于2020年度发表的新分类单元与文献资料, 编制了物种名录, 分析了新分类单元的地理分布与模式标本存放情况等。2020年, 中国半翅目等29目昆虫共描述349个新分类单元, 包括新属35个, 新种311个, 新亚种3个; 新种发表的热点地区在我国的西南山地及其邻近地区。模式标本存放单位多达69家, 其中正模标本主要存放在国内保藏机构, 而境外机构保藏的标本较少且以副模标本为主。本年度描述的349个新分类单元由356位作者所贡献, 共发表文献182篇; Zootaxa和ZooKeys是发表的主要期刊。本次调查为进一步深入研究物种演化的时空格局及生物多样性保护提供了基础数据。同时, 由于人类面临生物多样性急剧下降的威胁, 应加快大数据平台的建设及其多样化信息的挖掘, 支撑生物多样性的研究和保护。     

Effects of different fidelity measures and contexts on the determination of diagnostic species

Question: How different are lists of diagnostic species of vegetation units, derived using various fidelity measures, in different contexts and with presence/absence versus cover data? Methods: Six different fidelity measures were calculated for vegetation units of two classified data sets covering contrasting types of Central European vegetation (beech forest and dwarf shrub vegetation). Both statistical and non‐statistical fidelity measures were used, and either species presence/absence or cover was considered. Each measure was calculated on four hierarchical levels and within two different contexts, either within the whole data set or within the next higher level of hierarchical classification. Average similarities of the diagnostic species lists derived from various combinations of fidelity measures and contexts were calculated and visualized using principal coordinate analysis (PCoA). Results: The correlations between fidelity values derived from non‐statistical and statistical measures were rather weak. Nevertheless, diagnostic species lists calculated for the same syntaxon by different measures usually had several species in common. Average similarity between pairs of fidelity measures or contexts (based on the Sørensen similarity index) ranged from 0.21 to 0.92. PCoA clustered individual combinations of fidelity measures and contexts mainly according to the context and the use of presence/absence versus cover data, rather than according to the fidelity measures. Conclusions: The strongest impact on the lists of diagnostic species was not the fidelity measure itself but the context of its application and the use of presence/absence or cover data. Despite the weak correlation between individual fidelity values, traditional (non‐statistical) and statistical measures produce quite similar lists of diagnostic species, provided that the context of the analysis is the same. Both approaches have their advantages and disadvantages, and the choice of the appropriate algorithm should depend on the focus of the study.