Effects of Epoxiconozale and Pyraclostrobin Fungicides in the Infection Process of Hemileia vastatrix on Coffee Leaves as Determined by Chlorophyll a Fluorescence Imaging

Coffee is the most traded commodity in the world, and Brazil is its largest producer. Coffee leaf rust, caused by the biotrophic fungus Hemileia vastatrix, is the most important coffee disease, reducing coffee yield by 35–50%. This study aimed to use the ratio of variable and maximum fluorescence of dark‐adapted tissue (F_v/F_m) as a parameter to differentiate presymptomatic tissue from healthy tissue during disease development in plants sprayed with pyraclostrobin and epoxiconazole after 4 days postinoculation. Visual severity was considered as an indicative of apparent disease and true severity as an indicative of both apparent and non‐apparent disease. There was a significant linear relationship between the areas of true severity and visual severity, and for each additional unit in the visual severity, there was an increase of 1.53 units on the true severity. For the epoxiconazole and pyraclostrobin treatments, coffee leaf rust symptoms decreased according to both visual and F_v/F_m images. Pustules on the leaves sprayed with epoxiconazole were smaller in size than those on the leaves of non‐sprayed plants but bigger than those sprayed with pyraclostrobin. The reduction in F_v/F_m values at the pustule epicentres present on the leaves of plants sprayed with epoxiconazole, and pyraclostrobin was greater than those of the non‐sprayed plants. This finding was expected and reflects the importance of these fungicides in prohibiting the progress of coffee leaf rust. The photosynthetic capacity of Coffea arabica was affected by H. vastatrix infection, and the F_v/F_m parameter was able to show this effect before the visual symptoms were noticed.     

Aggressiveness and Genetic Diversity of Hemileia vastatrix During an Epidemic in Colombia

Since 2008, Colombia has been experiencing an epidemic of the coffee rust Hemileia vastatrix. The altitude range of the disease has expanded, and nursery and young plants that were usually not attacked by the disease are now significantly affected. To determine whether this new epidemic has been caused by a new pathogenic isolate, the molecular diversity of the pathogen causing the epidemic in different regions of the country was assessed, using AFLP molecular markers on isolates collected from coffee fields prior and after the year 2008. We also evaluated the aggressiveness of isolates collected from diverse coffee‐producing areas and from different coffee genotypes. Isolates collected before and during the present epidemic were quite similar both genetically and with regard to their aggressiveness. Out of a total of 349 fragments amplified from 6 AFLP primer combinations, 48 (13.2%) were polymorphic and only 18 were unique among H. vastatrix isolates representative of pre‐2008 and post‐2008 epidemic populations. We conclude that the epidemic was caused by the excessive rainfall that has occurred in Colombia since 2006 and that extended to 2011 and not by the arrival of a new isolate of the pathogen or a change in virulence of the species present in the country.     

The potential of small exclosures in assisting regeneration of coffee shade trees in South‐Western Ethiopian coffee forests

Ethiopian Afromontane moist forests where coffee grows as understorey shrub are traditionally managed by the local communities for coffee production through thinning of the shade tree canopy and slashing of competing undergrowth. This management practice has a negative impact on the coffee shrubs, because the removal of shade tree saplings and seedlings reduces the succession potential of the shade tree canopy, which threatens the very existence of the shade coffee production system. We assessed the functionality of small exclosures to initiate coffee shade tree canopy restoration through natural regeneration. Our results show that small exclosures have a strong restoration potential for the coffee shade trees preferred by farmers (Albizia schimperiana, A. gummifera and Millettia ferruginea), as evidenced from their seedling abundance, survival and growth. The regeneration of late‐successional tree species of the moist Afromontane forest was not successful in the small exclosures, most probably due to the low abundance or absence of adult trees as seed sources for regeneration. Therefore, temporary establishment of small exclosures in degraded coffee forest fragments where shade trees are getting old or dying is recommended for sustainable shade coffee production.     

Infection Process of Cercospora coffeicola on Coffee Leaf

Brown eye spot, caused by Cercospora coffeicola, is an important disease of coffee. Both adaxial and abaxial leaf surfaces were inoculated with a conidial suspension of C. coffeicola. Samples were collected from 4 to 168 h after inoculation and then again at 35 days. Germinated conidia showed positive tropism to stomata where attempted penetrations occurred. Appressoria were not observed. After penetration, C. coffeicola colonized the lacunous parenchyma both inter and intracellularly. Sporulation occurred through or around the stomata. Results from this study provide new insights into the infection process of C. coffeicola on coffee leaf.     

Effect of farm diversity on harvesting of coffee leaves by the leaf‐cutting ant Atta cephalotes

1 In Mesoamerica, shade trees are often included within coffee (Coffea arabica) agroforestry systems. Shade trees potentially protect the main crop by increasing vegetational diversity and reducing insect herbivory through one or more mechanisms. 2 The effect of on‐farm vegetational diversity on harvesting of coffee leaves by the leaf‐cutting ant, Atta cephalotes L., was examined on 15 coffee farms varying in vegetational diversity near Turrialba, Costa Rica. The farms ranged from coffee monocultures to complex‐shade coffee systems with three or more tree species present. The vegetational diversity of each farm was quantified using a leaf area index. 3 The species composition and biomass of the plant material being carried into colonies by ants was collected, identified to species, and its biomass was quantified four times during one year for at least two colonies in each of the 15 farms. 4 The proportion of plant biomass that was coffee being retrieved by A. cephalotes differed significantly among farm management types, and was highest (40%) in monocultures and lowest (< 1%) in farms with complex shade. Coffee was always harvested in a lower proportion than predicted based upon its relative abundance on the farms. 5 In dual‐choice bioassays with laboratory colonies, A. cephalotes significantly preferred the leaves of the predominant shade tree species on the farms, poró (Erythrina poeppigiana) over coffee. 6 The results indicate risk of injury by A. cephalotes can be reduced in vegetationally diverse coffee agroecosystems due at least in part to a foraging preference by the ants for plants other than coffee.     

Microscopic and biochemical aspects of sorghum resistance to anthracnose mediated by silicon

The use of silicon (Si) in agriculture has attracted a great deal of interest from researchers because of the numerous benefits of this element to plants, especially when they are submitted to abiotic and/or biotic types of stress. The host's increased resistance to diseases, promoted by Si, is mainly associated with the deposition of this element in the tissues and the potentiation of defence mechanisms. However, the mechanisms involved in Si‐mediated host resistance need to be further investigated. Thus, this study aimed to microscopically and biochemically elucidate the resistance of sorghum to anthracnose. In the leaves of plants supplied with Si, in addition to a greater deposition of Si at the infection sites, the acervuli were smaller in number compared to the leaves of plants not supplied with Si. Additionally, the activities of the defence enzymes peroxidases and polyphenoloxidases and the concentration of anthocyanins were higher in the leaves of plants supplied with Si. It can be concluded that Si, in addition to participate in the physical barrier that slows or prevents Colletotrichum sublineolum penetration in sorghum leaves, also plays a role in the biochemical aspect of sorghum resistance to anthracnose.     

Effect of cinnamaldehyde on biofilm formation and sarA expression by methicillin‐resistant Staphylococcus aureus

Aims: To investigate the antibiofilm effect of cinnamaldehyde on methicillin‐resistant Staphylococcus aureus (MRSA) and analyse the effect of subminimum inhibitory concentrations (MICs) of cinnamaldehyde on the expression of the biofilm‐related gene sarA. Methods and Results: The MICs and minimum bactericidal concentrations (MBCs) were determined using a microtitre broth dilution method. Biofilm susceptibility was determined using 3‐(4,5‐dimethylthiazol‐2‐yl)‐2,5‐diphenyltetrazolium bromide (MTT) staining and colony forming unit (CFU) counting assays. Antibiofilm effects were studied with scanning electron microscopy (SEM) and confocal laser scanning microscopy (CLSM). SarA expression was assessed by real‐time PCR. MICs and MBCs were in the range 0·0625–0·5% (v/v). The killing effects were concentration dependent. At a concentration of 5× MIC, all strains in biofilm were decreased to lower than 20% of the control groups. SEM and CLSM images indicated that a 5× MIC concentration of cinnamaldehyde was able to detach and kill existing biofilms. Apart from strain JB‐06, real‐time PCR showed that the expression of sarA of all other strains was decreased upon exposure to sub‐MICs of cinnamaldehyde. Conclusions: These data showed the strong killing effect of cinnamaldehyde against MRSA within biofilms. Significance and Impact of the Study: This study indicated the potential of cinnamaldehyde as an inhibitory agent for use in MRSA biofilm‐related infections.     

Arbuscular mycorrhizal inoculation and superphosphate application influence plant development and yield of coffee in Brazil

 This paper reports a 6-year field study of the effects of mycorrhizal pre-colonization of coffee seedlings on initial crop development and coffee bean yield in a low-fertility Oxisol amended with superphosphate (P) at planting. The experiment included five P rates (0, 20, 40, 80 and 160 g plant^–1 P₂O₅) combined with seven fungal treatments [non-mycorrhizal control, pre-colonization with a mix of Glomus clarum and Gigaspora margarita (CM) and with five isolates of Glomus etunicatum]. Inoculated and non-inoculated outplants were raised under glasshouse conditions, transplanted into the field in January 1989 and monitored until July 1995. Plant height and stem diameter were greatly enhanced by P application and were higher in mycorrhizal seedlings than in controls up to 19 months after transplanting (MAT) but were not different at 26 MAT. Inoculation effects on tree canopy diameter were significant up to 26 MAT, at which time mycorrhizal colonization was high (43–55%), but did not differ amongst plants, regardless of whether or not the plants had been pre-colonized at the nursery stage. Root colonization and spore number in the soil were reduced by high P rates at 26 MAT. The first bean yield (1991) was highly enhanced by P and all pre-colonization treatments (38% increment over control) and these factors showed a significant interaction. Three isolates of G. etunicatum showed yield enhancements above 50%. The P rate for maximal yield was 207 g plant^–1 P₂O₅ for non-pre-colonized and approximately 100 g plant^–1 for pre-colonized plants. For this harvest, the mycorrhizal biofertilizer effect was equal to 254 kg ha^–1 P₂O₅. In subsequent years, pre-colonization effects were reduced and inconsistent. In 1992, 1993 and 1995, yield was affected by P but not by mycorrhizal inoculation. In 1994 there was a P versus mycorrhiza interaction and CM and G. etunicatum-Var gave higher yields than non-precolonized plants. Considering accumulated yield for this 5-year period, P application resulted in high yield increment in all treatments, whereas pre-colonization effects were extremely diminished. However, despite inconsistency amongst mycorrhizal treatments, pre-colonization effects were detected at the fifth harvest in some fungal treatments. Based on the total yield of five harvests, maximal productivity was achieved with CM at 20 g plant^–1 P₂O₅ and with CM and G. etunicatum-Var at the highest P rate. Diminishing mycorrhizal effects over time are related to colonization of non-precolonized seedlings by the indigenous fungi and to the reduced external P requirement of the mature crop. If adequate phosphorus is applied at planting, pre-colonization of outplants with selected arbuscular mycorrhizal fungi enhances early crop development and productivity of coffee in low-fertility soils of Brazil. Accepted: 3 October 1997     

Increased light‐use efficiency sustains net primary productivity of shaded coffee plants in agroforestry system

In agroforestry systems, shade trees strongly affect the physiology of the undergrown crop. However, a major paradigm is that the reduction in absorbed photosynthetically active radiation is, to a certain extent, compensated by an increase in light‐use efficiency, thereby reducing the difference in net primary productivity between shaded and non‐shaded plants. Due to the large spatial heterogeneity in agroforestry systems and the lack of appropriate tools, the combined effects of such variables have seldom been analysed, even though they may help understand physiological processes underlying yield dynamics. In this study, we monitored net primary productivity, during two years, on scales ranging from individual coffee plants to the entire plot. Absorbed radiation was mapped with a 3D model (MAESPA). Light‐use efficiency and net assimilation rate were derived for each coffee plant individually. We found that although irradiance was reduced by 60% below crowns of shade trees, coffee light‐use efficiency increased by 50%, leaving net primary productivity fairly stable across all shade levels. Variability of aboveground net primary productivity of coffee plants was caused primarily by the age of the plants and by intraspecific competition among them (drivers usually overlooked in the agroforestry literature) rather than by the presence of shade trees.     

Effect of Soil‐applied Zinc and Manganese on the Development of Rhizoctonia Aerial Blight of Soybean

This study aimed to investigate the effect of soil‐applied zinc (Zn) and manganese (Mn) rates on the development of aerial blight, caused by Rhizoctonia solani Kühn, in soybean. Plants (cv. ‘Conquista’) were grown in a typical Acrustox red‐yellow latosol amended with Zn rates (applied as ZnSO_4·7H₂O; 24% Zn) of 0, 1, 2, 4, 8 and 16 mg/dm³ of soil and Mn rates (applied as MnSO_4·H₂O; 36% Mn) of 0, 1.5, 3 and 6 mg/dm³ of soil and inoculated with R. solani. The relationship between Zn and Mn concentrations on leaf tissues and the rates of these micronutrients was linear. The incubation period was not affected by Zn and Mn rates. The relationship between application rates and the area under aerial blight progress curve was best described with a positive linear regression model for Zn and with a positive quadratic regression model for Mn. Results from this study showed that high foliar concentrations of Zn and Mn do not increase soybean resistance to aerial blight.     

Soybean Resistance to Phakopsora pachyrhizi as Affected by Acibenzolar‐S‐Methyl,Jasmonic Acid and Silicon

Asian soybean rust (ASR), caused by Phakopsora pachyrhizi, is one of the most important diseases on soybean. At the moment, ASR is managed mainly with fungicides due to the absence of commercial cultivars with resistance to this disease. This study evaluated the effects of acibenzolar‐Smethyl (ASM), jasmonic acid (JA), potassium silicate (PS) and calcium silicate (CS) on soybean resistance to ASR. The ASM, JA and PS were sprayed to leaves 24 h prior to inoculation with P. pachyrhizi. The CS was amended to the soil. The incubation period (time from the inoculation until symptoms development) was longer for plants growing in soil amended with CS or sprayed with ASM in comparison with plants sprayed with water (control). Plants sprayed with ASM had longer latent period (time from the inoculation until signs appearance) in comparison with the control plants. Plants sprayed with PS showed fewer uredia per cm² of leaf in relation to the control plants. The ASM and PS were the most effective treatments in reducing the ASR symptoms in contrast to the JA and CS treatments. The JA served as an inducer of susceptibility to ASR.     

Elemental composition of strawberry plants inoculated with the plant growth‐promoting bacterium Azospirillum brasilense REC3, assessed with scanning electron microscopy and energy dispersive X‐ray analysis

The elemental composition of strawberry plants (Fragaria ananassa cv. Macarena) inoculated with the plant growth‐promoting bacterium Azospirillum brasilense REC3, and non‐inoculated controls, was studied using scanning electron microscopy (SEM) and energy dispersive X‐ray (EDS) analysis. This allowed simultaneous semi‐quantification of different elements in a small, solid sample. Plants were inoculated and grown hydroponically in 50% or 100% Hoagland solution, corresponding to limited or optimum nutrient medium, respectively. Bacteria‐inoculated plants increased the growth index 45% and 80% compared to controls when grown in 100% and 50% Hoagland solution, respectively. Thus, inoculation with A. brasilense REC3 in a nutrient‐limited medium had the strongest effect in terms of increasing both shoot and root biomass and growth index, as already described for Azospirillum inoculated into nutrient‐poor soils. SEM‐EDS spectra and maps showed the elemental composition and relative distribution of nutrients in strawberry tissues. Leaves contained C, O, N, Na, P, K, Ca and Cu, while roots also had Si and Cl. The organic fraction (C, O and N) accounted for over 96.3% of the total chemical composition; of the mineral fraction, Na had higher accumulation in both leaves and roots. Azospirillum‐inoculated and control plants had similar elemental quantities; however, in bacteria‐inoculated roots, P was significantly increased (34.33%), which constitutes a major benefit for plant nutrition, while Cu content decreased (35.16%).     

Effect of selenium compounds on the damage induced by oxysterol on rat arterial walls

Wistar rats were fed Se-deficient (0.017±0.002 mg Se/kg) and Seadequate (0.32±0.045 Se mg/kg) diets for 12 mo and then were given 5 mg/kg of cholestane-3β,tα,6β-triol (3-triol), intravenously. Se compounds (Na₂SeO₃ and ebselen) were supplemented in different doses and times to the Se-deficient rats. Twenty-four hours after 3-triol infusion, the changes in ultrastructures of rat aorta were examined by scanning electron micrography (SEM) and transmission electron micrography (TEM). SEM examinations showed that 3-triol induced diffused injuries on arterial endothelial urfaces of long-term Se-deficient rat, and a large number of holes or craterlike defects were observed. TEM examinations further showed that 3-triol induced swelling, necrosis, and shedding of endothelial cells, which resulted in the destruction of endothelial integrity. Mean-while, smooth muscle cells proliferated and migrated toward intimae; the breakage of internal elastic lamina benefited the migration of smooth muscle cells. Supplemented with Na₂SeO₃ (40 μg/kg, 10 d per continuum) and ebselen (20 mg/kg), respectively, exhibited significant protection from damages induced by 3-triol. It seems that protecting mechanisms were different between Na₂SeO₃ and ebselen. The present investigation gave visual evidence that both injuries induced by cholesterol oxides and the Se nutritional status contributed to the development of atherosclerosis.     

Single organelle dynamics linked to 3D structure by correlative live‐cell imaging and 3D electron microscopy

Live‐cell correlative light‐electron microscopy (live‐cell‐CLEM) integrates live movies with the corresponding electron microscopy (EM) image, but a major challenge is to relate the dynamic characteristics of single organelles to their 3‐dimensional (3D) ultrastructure. Here, we introduce focused ion beam scanning electron microscopy (FIB‐SEM) in a modular live‐cell‐CLEM pipeline for a single organelle CLEM. We transfected cells with lysosomal‐associated membrane protein 1‐green fluorescent protein (LAMP‐1‐GFP), analyzed the dynamics of individual GFP‐positive spots, and correlated these to their corresponding fine‐architecture and immediate cellular environment. By FIB‐SEM we quantitatively assessed morphological characteristics, like number of intraluminal vesicles and contact sites with endoplasmic reticulum and mitochondria. Hence, we present a novel way to integrate multiple parameters of subcellular dynamics and architecture onto a single organelle, which is relevant to address biological questions related to membrane trafficking, organelle biogenesis and positioning. Furthermore, by using CLEM to select regions of interest, our method allows for targeted FIB‐SEM, which significantly reduces time required for image acquisition and data processing.      

Direct Imaging of Cl‐ and Cu‐Induced Short‐Circuit Efficiency Changes in CdTe Solar Cells

To achieve high‐efficiency polycrystalline CdTe‐based thin‐film solar cells, the CdTe absorbers must go through a post‐deposition CdCl₂ heat treatment followed by a Cu diffusion step. To better understand the roles of each treatment with regard to improving grains, grain boundaries, and interfaces, CdTe solar cells with and without Cu diffusion and CdCl₂ heat treatments are investigated using cross‐sectional electron beam induced current, electron backscatter diffraction, and scanning transmission electron microscope techniques. The evolution of the cross‐sectional carrier collection profile due to these treatments that cause an increase in short‐circuit current and higher open‐circuit voltage are identified. Additionally, an increased carrier collection in grain boundaries after either/both of these treatments is revealed. The increased current at the grain boundaries is shown to be due to the presence of a space charge region with an intrinsic carrier collection profile width of ≈350 nm. Scanning transmission electron microscope electron‐energy loss spectroscopy shows a decreased Te and increased Cl concentration in grain boundaries after treatment, which causes the inversion. Each treatment improves the overall carrier collection efficiency of the cell separately, and, therefore, the benefits realized by each treatment are shown to be independent of each other.     

Effect of Potassium on Potato Microtuber Production in vitro

The role of potassium nutrition in microtuber production was investigated in two potato cultivars belonging to different maturity groups. Alterations were made in Murashige and Skoog (MS) medium to obtain seven concentrations of potassium (10, 15, 20, 25, 30, 35 and 40 mM), and their effects were studied on microtuber number, microtuber mass and harvest index. In late cultivar Kufri Sindhuri, an increase in potassium concentration beyond 25 mM decreased the number of microtubers. Whereas, potassium did not show any inhibitory effect on microtuber number in early cultivar Kufri Ashoka. Potassium showed promoting effect on microtuber mass in both the cultivars. Maximum microtuber mass and harvest index were observed when the medium was supplemented with 40 mM potassium. Therefore, large size potato microtubers amenable to direct field planting can be induced in MS medium containing 40 mM potassium. This revised version was published online in July 2006 with corrections to the Cover Date.     

Operando Observations of SEI Film Evolution by Mass‐Sensitive Scanning Transmission Electron Microscopy

The solid electrolyte interphase (SEI) spontaneously formed on anode surfaces as a passivation layer plays a critical role in the lithium dissolution and deposition upon discharge/charge in lithium ion batteries and lithium‐metal batteries. The formation kinetics and failure of the SEI films are the key factors determining the safety, power capability, and cycle life of lithium ion and lithium‐metal batteries. Since SEI films evolve with the volumetric and interfacial changes of anodes, it is technically challenging in experimental study of SEI kinetics. Here operando observations are reported of SEI formation, growth, and failure at a high current density by utilizing a mass‐sensitive Cs‐corrected scanning transmission electron microscopy. The sub‐nano‐scale observations reveal a bilayer hybrid structure of SEI films and demonstrate the radical assisted SEI growth after the SEI thickness beyond the electron tunneling regime. The failure of SEI films is associated with rapid dissolution of inorganic layers when they directly contact with the electrolyte in broken SEI films. The initiation of cracks in SEI films is caused by heterogeneous volume changes of the electrodes during delithiation. These microscopic insights have important implications in understanding SEI kinetics and in developing high‐performance anodes with the formation of robust SEI films.     

Evolutionary shifts in the melanin‐based color system of birds

Melanin pigments contained in organelles (melanosomes) impart earthy colors to feathers. Such melanin‐based colors are distributed across birds and thought to be the ancestral color‐producing mechanism in birds. However, we have had limited data on melanin‐based color and melanosome diversity in Palaeognathae, which includes the flighted tinamous and large‐bodied, flightless ratites and is the sister taxon to all other extant birds. Here, we use scanning electron microscopy and spectrophotometry to assess melanosome morphology and quantify reflected color for 19 species within this clade. We find that brown colors in ratites are uniquely associated with elongated melanosomes nearly identical in shape to those associated with black colors. Melanosome and color diversity in large‐bodied ratites is limited relative to other birds (including flightless penguins) and smaller bodied basal maniraptoran dinosaur outgroups of Aves, whereas tinamous show a wider range of melanosome forms similar to neognaths. The repeated occurrence of novel melanosome forms in the nonmonophyletic ratites suggests that melanin‐based color tracks changes in body size, physiology, or other life history traits associated with flight loss, but not feather morphology. We further anticipate these findings will be useful for future color reconstructions in extinct species, as variation in melanosome shape may potentially be linked to a more nuanced palette of melanin‐based colors.     

Life history parameters of the cattle long‐nosed sucking louse,Linognathus vituli

Cattle sucking lice, Linognathus vituli (L.) (Phthiraptera: Linognathidae), were obtained from naturally infected cattle and maintained within ‘arenas’ affixed to the backs of cattle confined in controlled environment chambers maintained at a constant temperature of 15 °C. Temperatures measured within the arenas at an ambient temperature of 15 °C were constant at about 34 °C and only slightly above the temperature on nearby skin. The effect of temperature on egg development was determined using a gradient of temperatures between 25 °C and 41 °C. Eggs did not develop at temperatures of < 26 °C or > 39 °C. Survival of eggs was highest at temperatures of 30 °C and 35 °C. The earliest hatch was observed at 5 days post‐oviposition (at 33–35 °C). Development was extended to as long as 13 days at the lower temperatures. Kaplan–Meier survival probabilities were compared for lice kept at two densities in the arenas and showed there to be no effect of density on louse survival. Similarly, the mean number of eggs/louse/day over an 8‐day period was not influenced by louse density.