Identification and characterization of a novel endoplasmic reticulum (ER) DnaJ homologue, which stimulates ATPase activity of BiP in vitro and is induced by ER stress

The activity of Hsp70 proteins is regulated by accessory proteins, which include members of the DnaJ-like protein family. Characterized by the presence of a highly conserved 70-amino acid J domain, DnaJ homologues activate the ATPase activity of Hsp70 proteins and stabilize their interaction with unfolded substrates. DnaJ homologues have been identified in most organelles where they are involved in nearly all aspects of protein synthesis and folding. Within the endoplasmic reticulum (ER), DnaJ homologues have also been shown to assist in the translocation, secretion, retro-translocation, and ER-associated degradation (ERAD) of secretory pathway proteins. By using bioinformatic methods, we identified a novel mammalian DnaJ homologue, ERdj4. It is the first ER-localized type II DnaJ homologue to be reported. The signal sequence of ERdj4 remains uncleaved and serves as a membrane anchor, orienting its J domain into the ER lumen. ERdj4 co-localized with GRP94 in the ER and associated with BiP in vivo when they were co-expressed in COS-1 cells. In vitro experiments demonstrated that the J domain of ERdj4 stimulated the ATPase activity of BiP in a concentration-dependent manner. However, mutation of the hallmark tripeptide HPD (His --> Gln) in the J domain totally abolished this activation. ERdj4 mRNA expression was detected in all human tissues examined but showed the highest level of the expression in the liver, kidney, and placenta. We found that ERdj4 was highly induced at both the mRNA and protein level in response to ER stress, indicating that this protein might be involved in either protein folding or ER-associated degradation.     

家蚕miR-2769靶基因的鉴定及表达分析

【目的】MiRNAs在昆虫变态发育过程中发挥非常重要的作用。对家蚕Bombyx mori miRNAs及靶基因的研究将有助于阐明miRNAs参与调控家蚕变态发育的分子机制。【方法】往家蚕5龄第2天幼虫血淋巴注射蜕皮激素20E后,qRT-PCR检测miR-2769在家蚕脂肪体中的表达;通过生物信息学方法预测家蚕miR-2769的靶基因;利用双荧光酶报告载体系统分析miR-2769与预测靶基因BmE75B的互作;qRT-PCR检测miR-2769及其靶基因BmE75不同剪接体在家蚕不同发育时期(幼虫、蛹和成虫)和幼虫不同组织(头、表皮、丝腺、脂肪体、精巢、卵巢、马氏管、中肠和血淋巴)中的表达量。【结果】研究结果表明,miR-2769可通过与家蚕BmE75B的3′UTR区结合位点的互作,显著抑制荧光素酶报告基因的表达。qRT-PCR结果表明,miR-2769和BmE75A/BmE75B在20E诱导家蚕脂肪体中表达趋势相反。时空表达分析结果表明,miR-2769与BmE75的不同剪接体在家蚕不同发育时期和不同组织中均具有特异性表达特征。在家蚕变态发育的不同阶段,miR-2769和BmE75A的...     

SG2NA is a regulator of endoplasmic reticulum (ER) homeostasis as its depletion leads to ER stress

SG2NA belongs to a three-member striatin subfamily of WD40 repeat superfamily of proteins. It has multiple protein-protein interaction domains involved in assembling supramolecular signaling complexes. Earlier, we had demonstrated that there are at least five variants of SG2NA generated by alternative splicing, intron retention, and RNA editing. Such versatile and dynamic mode of regulation implicates it in tissue development. In order to shed light on its role in cell physiology, total proteome analysis was performed in NIH3T3 cells depleted of 78 kDa SG2NA, the only isoform expressing therein. A number of ER stress markers were among those modulated after knockdown of SG2NA. In cells treated with the ER stressors thapsigargin and tunicamycin, expression of SG2NA was increased at both mRNA and protein levels. The increased level of SG2NA was primarily in the mitochondria and the microsomes. A mouse injected with thapsigargin also had an increase in SG2NA in the liver but not in the brain. Cell cycle analysis suggested that while loss of SG2NA reduces the level of cyclin D1 and retains a population of cells in the G1 phase, concurrent ER stress facilitates their exit from G1 and traverse through subsequent phases with concomitant cell death. Thus, SG2NA is a component of intrinsic regulatory pathways that maintains ER homeostasis.     

Mechanisms of cell death induced by hexabromocyclododecane (HBCD) involves apoptosis,autophagy, and ER stress

Hexabromocyclododecane (HBCD), was a widely utilized brominated flame retardant, commonly found in a wide range of household products. The pervasiveness of HBCD has identified the presence of this chemical in foods and in human tissues. Therefore, HBCD has been identified as a chemical of concern. The aim was to investigate the degree of cytotoxicity of HBCD in a range of cell lines derived from different tissues, (including hematopoietic, nerve, liver, and kidney-derived cells) with a view of determining any differential cell type effects. In addition, this study also investigated the mechanism(s) by which HBCD could cause cell death. The results showed that HCBD was considerably more toxic to leukocyte-derived (RBL2H3) and neuronal-derived (SHSY-5Y) cells with LC₅₀ values of 1.5 and 6.1 µM, respectively, compared to cells derived from liver (HepG2) and kidney (Cos-7), which had LC₅₀ values of 28.5 and 17.5 µM, respectively. A detailed investigation of the mechanism(s) of cell death showed that HBCD caused, at least in part, Ca²⁺-dependent cell death, caspase-activated apoptosis, and autophagy, but there was little evidence for either necrosis or necroptosis occurring. Furthermore, it was shown that HBCD can also induce the ER stress response which is a known trigger of both apoptosis and autophagy and therefore this could be one of the crucial events by which cell death is initiated. As each of these cell death mechanisms was investigated in at least two different cell lines and no differences were identified, it is likely that the mode of action is not cell-type specific.     

Identification of the gene MdSOD3 and its role in resisting heavy metal stress in housefly (Musca domestica)

超氧化物歧化酶(SOD)是一种重要的抗氧化酶,在昆虫抗氧化保护过程中起着重要作用.本研究通过RTPCR技术鉴定了家蝇Musca domestica MdSOD3基因(GenBank登录号为JQ408979),cDNA序列817 bp,开放阅读框534 bp,推导的多肽序列含有177个氨基酸.同源性分析及NJ法系统分析表明MdSOD3与其他物种的Cu/ZnSOD关系较近.荧光定量PCR检测该基因在家蝇幼虫脂肪体、肠、表皮和血细胞中不存在差异表达;在受到不同浓度重金属Cd2+刺激时,MdSOD3基因呈诱导性表达,5 mmol/L时表达量最高.通过RNAi策略技术成功敲低MdSOD3表达水平.将RNA干扰60h的幼虫置于5 mmol/L Cd2+处理24h后死亡率明显升高,并且出现中毒表象.NBT活性染色检测到体外重组表达的MdSOD3具有明显的酶活性.结果提示MdSOD3基因可能在家蝇抗逆防御过程中起着重要作用.     

家蝇MdSOD3基因的鉴定及其在抵抗重金属胁迫中的作用

超氧化物歧化酶（SOD）是一种重要的抗氧化酶, 在昆虫抗氧化保护过程中起着重要作用。本研究通过RT-PCR技术鉴定了家蝇Musca domestica MdSOD3基因(GenBank登录号为JQ408979), cDNA序列817 bp, 开放阅读框534 bp, 推导的多肽序列含有177个氨基酸。同源性分析及NJ法系统分析表明MdSOD3与其他物种的Cu/ZnSOD关系较近。荧光定量PCR检测该基因在家蝇幼虫脂肪体、 肠、 表皮和血细胞中不存在差异表达; 在受到不同浓度重金属Cd²⁺刺激时, MdSOD3基因呈诱导性表达, 5 mmol/L 时表达量最高。通过RNAi策略技术成功敲低MdSOD3表达水平。将RNA干扰60 h的幼虫置于5 mmol/L Cd²⁺处理24 h后死亡率明显升高, 并且出现中毒表象。NBT活性染色检测到体外重组表达的MdSOD3具有明显的酶活性。结果提示MdSOD3基因可能在家蝇抗逆防御过程中起着重要作用。     

Identification of Agrostis tenuis leaf proteins in response to As(V) and As(III) induced stress using a proteomics approach

Agrostis tenuis is known to be able to metabolise arsenate (As(V)) and arsenite (As(III)) which are toxic salts for most plants. A proteomic approach was developed to identify proteins expressed in response to treatments with these salts. A. tenuis plants were grown hydroponically in the presence of 134 and 668 μM As(V) or As(III) for 8 days at pH 7. During arsenic treatments, leaves showed chlorotic symptoms but fresh and dry leaf weights were not reduced, except in the presence of 668 μM As(III). On the contrary, a slight increase in biomass was observed with high As(V) concentrations. Thus, A. tenuis was more sensitive to As(III) than to As(V) and biomass was affected. Proteomic analysis enabled identification of a set of A. tenuis leaf proteins differentially expressed in response to arsenic exposure including a major functionally homogeneous group of enzymes such as oxygen-evolving enhancer protein, RuBisCO small and large subunits, RuBisCO activase and ATP synthase involved in the Calvin or Krebs cycle. The adaptative response to treatments resulted in partial disruption of the photosynthetic processes with prominent fragmentation of the RubisCO. Other proteins expressed differently from controls were identified and are possibly involved in the tolerance mechanisms of A. tenuis to arsenic treatments.     

ER Ca2+ depletion triggers apoptotic signals for endoplasmic reticulum (ER) overload response induced by overexpressed reticulon 3 (RTN3/HAP)

Perturbance of endoplasmic reticulum (ER) function, either by the mutant proteins not folding correctly, or by an excessive accumulation of proteins in the organelle, will lead to the unfolded protein response (UPR) or ER overload response (EOR). The signal-transducing pathways for UPR have been identified, whereas the pathway for EOR remains to be elucidated. Our previous study demonstrated that the overexpression of reticulon 3 (RTN3, also named HAP, homologue of ASY protein) caused apoptosis with the depletion of ER Ca(2+) stores. In present research, we characterized RTN3 as a novel EOR-induced protein, triggering the apoptotic signals through the release of ER Ca(2+) and the elevation of cytosolic Ca(2+). Our studies showed that overexpressed RTN3 induced EOR, eliciting ER-specific apoptosis with activation of caspase-12 and mitochondrial dysfunction through ER Ca(2+) depletion and the sustained elevation of cytosolic Ca(2+). Furthermore, we demonstrated that overexpressed RTN3 and stimuli that activate both EOR and UPR, not UPR only, were able to induce up-regulation of inducible nitric oxide synthase (iNOS) in HeLa cells through ER Ca(2+) release and reactive oxygen intermediates (ROIs), resulting in endogenous calcium-dependent nitric oxide protecting cells against ER specific apoptosis, which suggested that the nitric oxide and iNOS represented a likely protective response to EOR, not the UPR. These results supported that the release of ER Ca(2+) stores triggered the initial signal-transducing pathways for EOR induced by overexpressed RTN3.     

Engineering of a target site-specific recombinase by a combined evolution- and structure-guided approach

Site-specific recombinases (SSRs) can perform DNA rearrangements, including deletions, inversions and translocations when their naive target sequences are placed strategically into the genome of an organism. Hence, in order to employ SSRs in heterologous hosts, their target sites have to be introduced into the genome of an organism before the enzyme can be practically employed. Engineered SSRs hold great promise for biotechnology and advanced biomedical applications, as they promise to extend the usefulness of SSRs to allow efficient and specific recombination of pre-existing, natural genomic sequences. However, the generation of enzymes with desired properties remains challenging. Here, we use substrate-linked directed evolution in combination with molecular modeling to rationally engineer an efficient and specific recombinase (sTre) that readily and specifically recombines a sequence present in the HIV-1 genome. We elucidate the role of key residues implicated in the molecular recognition mechanism and we present a rationale for sTre’s enhanced specificity. Combining evolutionary and rational approaches should help in accelerating the generation of enzymes with desired properties for use in biotechnology and biomedicine.     

鸡miR-17-92基因簇靶基因ZFPM2的鉴定及功能分析

miR-17-92基因簇在哺乳动物的许多生理和病理过程中发挥重要作用。本实验室前期研究发现,miR-17-92基因簇促进鸡前脂肪细胞的增殖,但其作用机制尚不清楚。为了揭示miR-17-92基因簇促进鸡前脂肪细胞增殖的作用机制,本研究采用CCK-8细胞增殖检测方法分析干扰ZFPM2对前脂肪细胞的影响,结果发现,干扰ZFPM2能显著促进鸡前脂肪细胞的增殖(P<0.01);与CCK-8分析结果相一致,干扰ZFPM2可致使细胞增殖标志基因PCNA、Ki67、Cyclin D1的mRNA表达量明显升高(P<0.01或P<0.05)。进一步对鸡ZFPM2基因进行生物信息学分析,发现该基因mRNA的3′UTR有两个区域存在miR-17-92基因簇4个成员(miR-17-5p、miR-20a、miR-19a及miR-19b)的潜在结合位点。为验证miR-17-92基因簇是否靶作用于鸡ZFPM2基因,构建了鸡ZFPM2基因3′UTR区的荧光素酶报告基因载体(野生型)(psi-CHECK2-ZFPM2-3′UTR-WT)及其突变型的荧光素酶报告基因载体(psi-CHECK2-ZFPM2-3′UTR-MUT)。报告基因活性分析显示,过表达mi-17-92基因簇能极显著地抑制野生型ZFPM2的报告基因活性(P<0.01);转染miR-17-5p、miR-20a及miR-19a的抑制剂均能显著地提高野生型ZFPM2报告基因的活性(P<0.01或 P<0.05),但这些抑制剂对突变型ZFPM2报告基因的活性无明显影响。qRT-PCR分析发现,miR-17-5p、miR-19a及miR-20a的抑制剂能显著提高内源性ZFPM2基因mRNA的表达水平(P<0.01或P<0.05)。共转染分析发现,尽管差异不显著,但miR-17-5p和miR-19a的抑制剂均倾向于降低ZFPM2干扰片段的促细胞增殖作用。本研究结果表明：miR-17-92基因簇成员miR-17-5p、miR-20a、miR-19a及miR-19b靶作用于ZFPM2;miR-17-92基因簇至少部分通过抑制ZFPM2基因表达从而促进鸡前脂肪细胞的增殖。     

MicroRNA基因及其靶位点的单核苷酸多态性与疾病易感性

微小RNAs(MicroRNAs)是一类内源性19～25个核苷酸大小的非编码RNA分子,能够通过碱基匹配原则识别并结合于靶基因3'非翻译区的靶位点,从而抑制靶基因的翻译和/或促进靶基因降解。近年许多研究表明,单核苷酸多态性(single nucleotide polymorphisms,SNPs)可影响m icroRNA对靶基因的调控过程。SNPs可发生在m icroRNA基因(指在pri-,pre-and mature-miRNA序列中),也可发生在靶基因的3'非翻译区的靶位点。这些SNPs通过影响microRNA对靶基因的调控过程,参与许多疾病如肿瘤、神经系统疾病、肌肥大、心血管疾病以及2型糖尿病的发生发展过程。本文拟对MicroRNAs及其靶mRNA的结合位点SNPs与疾病的相关研究做一综述。     

miR-203a靶向及其靶基因对乳腺癌淋巴结转移的影响*

目的:探讨miR-203a靶向及其靶基因ATM在乳腺癌组织中的表达及相关性,为乳腺癌的发病机制尤其是淋巴结转移机制提供理论依据。方法:收集30例配对的乳腺癌和癌旁正常组织,对两组标本采用RT-qPCR检测miR-203a及ATM的相对表达量,对miR-203a和ATM进行相关分析,并对其与临床病理特征进行相关分析,比较miR-203a和ATM的表达在淋巴结转移和未转移之间是否有统计学差异。结果:与癌旁正常组织相比,乳腺癌组织中miR-203a的表达显著升高(P＜0.01),ATM的表达显著降低(P＜0.01),二者呈显著负相关(r=-0.847,P＜ 0.01);miR-203a和ATM的表达均与淋巴结是否转移与不同临床分期显著相关(P＜0.05);miR-203a在淋巴结已转移组中的表达显著低于未转移组(P＜0.05),ATM在淋巴结已转移组中的表达显著高于未转移组(P＜0.01)。结论:乳腺癌早期miR-203a过表达抑制其靶基因ATM的表达很可能是一种调节肿瘤细胞增殖、转移和侵袭性的保护机制,到中晚期下调miR-203a上调ATM基因,可能参与淋巴结转移。     

Dexamethasone-induced gene 2 (dig2) is a novel pro-survival stress gene induced rapidly by diverse apoptotic signals

Glucocorticoid hormones induce apoptosis in lymphoid cells. This process requires de novo RNA/protein synthesis. Here we report the identification and cloning of a novel dexamethasone-induced gene designated dig2. Using Affymetrix oligonucleotide microarray analysis of approximately 10,000 genes and expressed sequence tags, we found that the expression of dig2 mRNA is significantly induced not only in the murine T cell lymphoma lines S49.A2 and WEHI7.2 but also in normal mouse thymocytes following dexamethasone treatment. This result was confirmed by Northern blot analysis. The induction of dig2 mRNA by dexamethasone appears to be mediated through the glucocorticoid receptor as it is blocked in the presence of RU486, a glucocorticoid receptor antagonist. Furthermore, we demonstrated that dig2 is a novel stress response gene, as its mRNA is induced in response to a variety of cellular stressors including thapsigargin, tunicamycin, and heat shock. In addition, the levels of dig2 mRNA were up-regulated after treatment with the apoptosis-inducing chemotherapeutic drug etoposide. Though the function of dig2 is unknown, dig2 appears to have a pro-survival function, as overexpression of dig2 reduces the sensitivity of WEHI7.2 cells to dexamethasone-induced apoptosis.