Equilibrium constants under physiological conditions for the reactions of the nonphosphorylated pathway of L-serine biosynthesis

The observed equilibrium constants (K_obs) for the reactions of d-2-phosphoglycerate phosphatase, d-2-Phosphoglycerate^3? + H₂O → d-glycerate^? + HPO₄^2?; d-glycerate dehydrogenase (EC 1.1.1.29), d-Glycerate^? + NAD⁺ → NADH + hydroxypyruvate^? + H⁺; and l-serine:pyruvate aminotransferase (EC 2.6.1.51), Hydroxypyruvate^? + l-H · alanine^± → pyruvate^? + l-H · serine^±; have been determined, directly and indirectly, at 38 °C and under conditions of physiological ionic strength (0.25 m) and physiological ranges of pH and magnesium concentrations. From these observed constants and the acid dissociation and metal-binding constants of the substrates, an ionic equilibrium constant (K) also has been calculated for each reaction. The value of K for the d-2-phosphoglycerate phosphatase reaction is 4.00 × 10³m [ΔG⁰ = ?21.4 kJ/mol (?5.12 kcal/mol)]([H₂0] = 1). Values of K_obs for this reaction at 38 °C, [K⁺] = 0.2 m, I = 0.25 M, and pH 7.0 include 3.39 × 10³m (free [Mg²⁺] = 0), 3.23 × 10³m (free [Mg²⁺] = 10^?3m), and 2.32 × 10³m (free [Mg²⁺] = 10^?2m). The value of K for the d-glycerate dehydrogenase reaction has been determined to be 4.36 ± 0.13 × 10^?13m (38 °C, I = 0.25 M) [ΔG⁰ = 73.6 kJ/mol (17.6 kcal/mol)]. This constant is relatively insensitive to free magnesium concentrations but is affected by changes in temperature [ΔH⁰ = 46.9 kJ/mol (11.2 kcal/mol)]. The value of K for the serine:pyruvate aminotransferase reaction is 5.41 ± 0.11 [ΔG⁰ = ?4.37 kJ/mol (?1.04 kcal/mol)] at 38 °C (I = 0.25 M) and shows a small temperature effect [ΔH⁰ = 16.3 kJ/ mol (3.9 kcal/mol)]. The constant showed no significant effect of ionic strength (0.06–1.0 m) and a response to the hydrogen ion concentration only above pH 8.5. The value of K_obs is 5.50 ± 0.11 at pH 7.0 (38 °C, [K⁺] = 0.2 m, [Mg²⁺] = 0, I = 0.25 M). The results have also allowed the value of K for the d-glycerate kinase reaction (EC 2.7.1.31), d-Glycerate^? + ATP^4? → d-2-phosphoglycerate^3? + ADP^3? + H⁺, to be calculated to be 32.5 m (38 °C, I = 0.25 M). Values for K_obs for this reaction under these conditions and at pH 7.0 include 236 (free [Mg²⁺] = 0) and 50.8 (free [Mg²⁺] = 10^?3m).     

Quantitative analysis of tissue folate using ultra high-performance liquid chromatography tandem mass spectrometry

The tissue distribution of folate in its numerous coenzyme forms may influence the development of disease at different sites. For instance, the susceptibility of human colonic mucosa to localized folate deficiency may predispose to the development of colorectal cancer. We report a sensitive and robust ultra high-performance liquid chromatography (UHPLC) tandem mass spectrometry method for quantifying tissue H₄folate, 5-CH₃-H₄folate, 5-CHO-H₄folate, folic acid, and 5,10-CH⁺-H₄folate concentration. Human colonic mucosa (20–100 mg) was extracted using lipase and conjugase enzyme digestion. Rapid separation of analytes was achieved on a UHPLC 1.9-μm C18 column over 7 min. Accurate quantitation was performed using stable isotopically labeled (¹³C₅) internal standards. The instrument response was linear over physiological concentrations of tissue folate (R² > 0.99). Limits of detection and quantitation were less than 20 and 30 fmol on column, respectively, and within- and between-run imprecision values were 6–16%. In colonic mucosal samples from 73 individuals, the average molar distribution of folate coenzymes was 58% 5-CH₃-H₄folate, 20% H₄folate, 18% formyl-H₄folate (sum of 5-CHO-H₄folate and 5,10-CH⁺-H₄folate), and 4% folic acid. This assay would be useful in characterizing folate distribution in human and animal tissues as well as the role of deregulated folate homeostasis on disease pathogenesis.     

Equilibrium constants under physiological conditions for the reactions of L-phosphoserine phosphatase and pyrophosphate: L-serine phosphotransferase

The observed equilibrium constants (K_obs) for the l-phosphoserine phosphatase reaction [EC 3.1.3.3] have been determined under physiological conditions of temperature (38 °C) and ionic strength (0.25 m) and physiological ranges of pH and free [Mg²⁺]. Using Σ and square brackets to indicate total concentrations $\text{K}{}_{\mathrm{<mtext>obs</mtext>}}\text{=}\text{Σ L-serine][Σ P}{}_{\mathrm{i}}\text{]}\text{Σ L-phosphoserine]H}{}_2\text{O]}\text{, K =}\text{L-H · serine}{}^{\mathrm{\pm }}\text{]HPO}{}_4{}^{\mathrm{2?}}\text{]}\text{[L-H · phosphoserine}{}^{\mathrm{2?}}\text{]H}{}_2\text{O]}$. The value of K_obs has been found to be relatively sensitive to pH. At 38 °C, K⁺] = 0.2 m and free [Mg²⁺] = 0; K_obs = 80.6 m at pH 6.5, 52.7 m at pH 7.0 [ΔG_obs⁰ = ?10.2 kJ/mol (?2.45 kcal/mol)], and 44.0 m at pH 8.0 ([H₂O] = 1). The effect of the free [Mg²⁺] on K_obs was relatively slight; at pH 7.0 ([K⁺] = 0.2 m) K_obs = 52.0 m at free [Mg²⁺] = 10^?3, m and 47.8 m at free [Mg²⁺] = 10^?2, m. K_obs was insignificantly affected by variations in ionic strength (0.12–1.0 m) or temperature (4–43 °C) at pH 7.0. The value of K at 38 °C and I = 0.25 m has been calculated to be 34.2 ± 0.5 m [ΔG_obs⁰ = ?9.12 kJ/mol (?2.18 kcal/ mol)]([H₂O] = 1). The K for the phosphoserine phosphatase reaction has been combined with the K for the reaction of inorganic pyrophosphatase [EC 3.6.1.1] previously estimated under the same physiological conditions to calculate a value of 2.04 × 10⁴, m [ΔG_obs⁰ = ?28.0 kJ/mol (?6.69 kcal/mol)] for the K of the pyrophosphate:l-serine phosphotransferase [EC 2.7.1.80] reaction. $\text{K}{}_{\mathrm{<mtext>obs</mtext>}}\text{=}\text{[}\text{Σ L-serine}\text{][}\text{Σ}\text{P}{}_{\mathrm{<mtext>i</mtext>}}\text{]}\text{[}\text{Σ L-phosphoserine}\text{][}\text{H}{}_2\text{O}\text{]}\text{, K =}\text{[L-H · serine}{}^{\mathrm{\pm }}\text{]HPO}{}_4{}^{\mathrm{2?}}\text{]}\text{[L-H · phosphoserine}{}^{\mathrm{2?}}\text{]H}{}_2\text{O}$. Values of K_obs for this reaction at 38 °C, pH 7.0, and I = 0.25 m are very sensitive to the free [Mg²⁺], being calculated to be 668 [ΔG_obs⁰ = ?16.8 kJ/mol (?4.02 kcal/mol)] at free [Mg²⁺] = 0; 111 [ΔG_obs⁰ = ?12.2 kJ/mol (?2.91 kcal/mol)] at free [Mg²⁺] = 10^?3, m; and 9.1 [ΔG_obs⁰ = ?5.7 kJ/mol (?1.4 kcal/mol) at free [Mg²⁺] = 10^?2, m). K_obs for this reaction is also sensitive to pH. At pH 8.0 the corresponding values of K_obs are 4000 [ΔG_obs⁰ = ?21.4 kJ/mol (?5.12 kcal/mol)] at free [Mg²⁺] = 0; and 97.4 [ΔG_obs⁰ = ?11.8 kJ/ mol (?2.83 kcal/mol)] at free [Mg²⁺] = 10^?3, m. Combining K_obs for the l-phosphoserine phosphatase reaction with K_obs for the reactions of d-3-phosphoglycerate dehydrogenase [EC 1.1.1.95] and l-phosphoserine aminotransferase [EC 2.6.1.52] previously determined under the same physiological conditions has allowed the calculation of K_obs for the overall biosynthesis of l-serine from d-3-phosphoglycerate. $\text{K}{}_{\mathrm{<mtext>obs</mtext>}}\text{=}\text{[}\text{Σ L-serine}\text{][}\text{Σ NADH}\text{][}\text{Σ}\text{P}{}_{\mathrm{<mtext>i</mtext>}}\text{][}\text{Σ}\text{α-}\text{ketoglutarate}\text{]}\text{[Σ d-3-}\text{phosphoglycerate}\text{][Σ NAD}{}^{\mathrm{+}}\text{][Σ L-glutamat0]}$ The value of K_obs for these combined reactions at 38 °C, pH 7.0, and I = 0.25 m (K⁺ as the monovalent cation) is 1.34 × 10^?2, m at free [Mg²⁺] = 0 and 1.27 × 10^?2, m at free [Mg²⁺] = 10^?3, m.     

Identification of 5,10-methylenetetrahydrofolate in rat bile

5,10-Methylenetetrahydrofolate (5,10-CH₂-H₄PteGlu) was identified as a major active reduced folate in rat bile using high-performance liquid chromatography with electrochemical detection (HPLC—ED). The identification of the folate derivative was based on the similarities in the retention-time profiles, electrochemical properties, UV absorption characteristics and demethylenation profiles of the bile folate and the synthetic standard. An HPLC—ED method was developed for the simultaneous determination of reduced folates including 5,10-CH₂-H₄PteGlu, tetrahydrofolate (H₄PteGlu), 10-formyltetrahydrofolate (10-HCO-H₄PteGlu) and 5-methyltetrahydrofolate (5-CH₃-H₄PteGlu) in rat bile. All peaks of the reduced folates in bile were separated using this method with a total retention time of less than 15 min. The detection limit was 0.01 ng/injection for H₄PteGlu, 10-HCO-H₄PteGlu and 5-CH₃-H₄PteGlu, and 0.02 ng/injection for 5,10-CH₂-H₄PteGlu at a signal-to-noise ratio of 3 and an injection volume of 100 μl. Recoveries of synthetic folates from rat bile were higher than 90%. The distribution percentages of 5,10-CH₂-H₄PteGlu, H₄PteGlu, 10-HCO-H₄PteGlu and 5-CH₃-H₄PteGlu in rat bile were 29.6 ± 7.2, 17.7 ± 3.5, 24.4 ± 6.5 and 28.2 ± 7.1%, respectively, and total secretion rate of the bile reduced folates was 1514 ± 663 ng/h (mean ± S.D., n = 9).     

Reactions of ruthenium(II) para-substituted tetraphenylporphyrin complexes with carbon monoxide oxygen: A kinetic investigation

The reaction of Ru(XTPP)(DMF)₂, where XTPP is the dianion of para substituted tetraphenylporphyrins and X is MeO, Me, H, Cl, Br, I, F, with O₂ and CO were studied in DMF. The process was found to be first-order in metalloporphyrin, first-order in molecular oxygen and carbon monoxide, and second-order overall. Second-order rate constants for the CO reaction ranged from 0.170 to 0.665 M^?1 s^?1 at 25°C, those for the O₂ reaction from 0.132 to 0.840 M^?1 s^?1 at 25°C. Similar activation parameters (ΔH_CO^± = 87 ± 1 kJ mol^?1, ΔS_CO^± = 22 ± 4 JK^?1 mol^?1; ΔH_O2^± = 81 ± 1 kJ mol^?1, and ΔS_O2^± = 11 ± 5 JK^?1 mol^?1) were found within each series. Reactivities of X substituted metalloporphyrins were found to follow different Hammett σ functions. The CO reactions correlated with σ_? following normal behavior; the O₂ reactions correlated with σ₈° indicating O₂ is π-bonded in the transition states. A dissociative mechanism is postulated for the process.     

Temperature and pressure dependent equilibrium studies of 1, 4, 8, 11-tetramethyl-1, 4, 8, 11-tetraazacyclotetradecane nickel(ii) in coordinating solvents

In coordinating solvents, the complex 1, 4, 8, 11- tetramethyl-1, 4, 8, 11-tetraazacyclotetradecane nickel(II) bisperchlorate exists as an equilibrium mixture involving four coordinate R,S,R,S-[Ni(tmc)]²⁺ and five coordinate R,S,R,S-[Ni(tmc)(solvent)]²⁺ species. Spectrophotometric measurements of this equilibrium in a number of solvents have been conducted over a range of temperatures and pressures. The stability order for the five coordinate complex in the solvents investigated is CH₃CN>DMF>DMSO>C₆H₅CN> H₂O>ClCH₂CN at 25 °C. Differences in stability are considered in terms of the measured thermodynamic parameters ΔH° and ΔS°. Both steric and electronic factors were found to influence solvent coordination with the macrocyclic complex.For the equilibrium in CH₃CN, C₆H₅CN, DMF and H₂O, reaction volumes, ΔV°, of −3.2±0.5, −4.2±0.5, −0.2±0.5 and −0.5±0.5 cm³ mol⁻¹ respectively have been determined. Each is significantly smaller than the corresponding solvent molar volume. The ΔV° for the equilibrium in CH₃CN is comparable with the previously determined activation volume for exchange of this solvent on R, S, R, S- [Ni(tmc)(CH₃CN)]²⁺. The equilibrium and measured volume parameters are discussed in relation to the mechanism for solvent exchange.     

Complexes of vitamin B6. XVI. Kinetics and reaction mechanism of iron(III) complexes with pyridoxal-5′-phosphate

The stopped flow technique has been used to study the kinetics of complex formation of iron(III) with pyridoxal-5-phosphate (PLP) in the pH range 1.00–2.50, and in the temperature range 18 °C– 30 °C, at an ionic strength of. 0.50 M (NaCl). From the initial concentration dependence of PLP (T_PLP,) of the reaction rate it can be shown that two kinetic steps can be represented as: k_obs′ = m_i + m_i′_PLP where m_i and m_i′ are pH-dependent parameters. The calculated activation data are δE* = 23.2 ± 1.8 kcal mol^?1 and 10.98 ± 0.53 kcal mol^?1 for the first and second kinetic steps, respectively and δS* are ?20.50 ± 5.96 e.u. and 24.62 ± 1.81 e.u., respeetively.     

Spatial and temporal dynamics of diffusive methane emissions in the Okavango Delta,northern Botswana,Africa

Global warming is associated with the continued increase in the atmospheric concentrations of greenhouse gases; carbon dioxide, methane (CH₄) and nitrous oxide. Wetlands constitute the largest single natural source of atmospheric CH₄ in the world contributing between 100 and 231 Tg year^?1 to the total budget of 503–610 Tg year^?1, approximately 60 % of which is emitted from tropical wetlands. We conducted diffusive CH₄ emission measurements using static chambers in river channels, floodplains and lagoons in permanent and seasonal swamps in the Okavango Delta, Botswana. Diffusive CH₄ emission rates varied between 0.24 and 293 mg CH₄ m^?2 h^?1, with a mean (±SE) emission of 23.2 ± 2.2 mg CH₄ m^?2 h^?1 or 558 ± 53 mg CH₄ m^?2 day^?1. These emission rates lie within the range reported for other tropical wetlands. The emission rates were significantly higher (P < 0.007) in permanent than in seasonal swamps. River channels exhibited the highest average fluxes at 31.3 ± 5.4 mg CH₄ m^?2 h^?1 than in floodplains (20.4 ± 2.5 mg CH₄ m^?2 h^?1) and lagoons (16.9 ± 2.6 mg CH₄ m^?2 h^?1). Diffusive CH₄ emissions in the Delta were probably regulated by temperature since emissions were highest (20–300 mg CH₄ m^?2 h^?1) and lowest (0.2–3.0 mg m^?2 h^?1) during the warmer-rainy and cooler winter seasons, respectively. Surface water temperatures between December 2010 and January 2012 varied from 15.3 °C in winter to 33 °C in summer. Assuming mean inundation of 9,000 km², the Delta’s annual diffusive emission was estimated at 1.8 ± 0.2 Tg, accounting for 2.8 ± 0.3 % of the total CH₄ emission from global tropical wetlands.     

The enthalpy of oxidation of flavin mononucleotide

The oxidation enthalpy of reduced flavin mononucleotide at pH 7.0 in 0.2 m phosphate buffer has been studied by determining the heat associated with the reaction: FMNH₂ + 2 Fe(CN)^?3₆ ? FMN + 2 Fe(CN)^?4₆ + 2 H⁺. (a) (The quinone, semiquinone, and hydroquinone forms of FMN are represented as FMN, FMNH, and FMNH₂, respectively.) Calorimetric experiments were performed in a flow microcalorimeter which was modified to prevent sample contamination by oxygen. The enthalpy observed for reaction (a), after correction for dilution and buffer effects, was ?39.2 ± 0.4 kcal (mole FMNH₂)^?1 at 25 °C. The potential difference, ΔE′, developed by reaction (a) was determined potentiometrically and corresponded to a free energy change, ΔG′, of ?30.3 kcal (mole FMNH₂)^?1. The resulting entropy change, ΔS′, was thus calculated to be ?29.8 e.u. Reaction (a) was also studied at temperatures of 7 °C and 35.5 °C. ΔC_p′ for the reaction was calculated as ?155 ± 18 cal deg^?1 (mole FMNH₂)^?1 at 20 °C. ΔH′ for the reaction (b), FMNH₂ ? FMN + H₂, (b) was calculated as +14.2 ± 0.7 kcal mole^?1 at 25 °C, relative to the enthalpy of the hydrogen electrode being identically equal to zero at all values of pH and temperature. The free energy at pH 7.0 for reaction (b), calculated from the potential was found to be ?9.7 kcal mole^?1, which resulted in an entropy for reaction (b) of 80.2 e.u. A thermal titration of reaction (a) was used to calculate the thermodynamic parameters for the formation of semiquinone dimer according to the reaction FMNH₂ + FMN ? (·FMNH)₂. (c) The free energy, enthalpy, and entropy changes for reaction (c) were estimated to be ?6.1 kcal mole^?1, ?7 kcal mole^?1, and ?3 e.u., respectively.     

Chiral Metal Complexes. 27. Stereoselectivity in the synthesis and reaction of coordinated aminomalonic acid derivatives

The synthesis is reported of a series of ternary cationic complexes of general form [Co(R,Rpicchxn)(ARMA)⁺ (where picchxn is the N₄ tetradentate N,N′-di(2-picolyl)-1,2-diaminocyclohexane and ARMA is a bidentate α-substituted-α-aminomalonate dianion). The aminomalonic acid (NH₂· C(COOH)₂·R) derivatives investigated have R = -CH₃ (AMMAH₂), -CH₂·CH₃ (AEMAH₂), -CH₂· CH₂·CH₃ (APMAH₂), -CH₂·(CH₂)₂·CH₃ (ABuTMAH₂, -CH₂·C₆H₅ (ABMAH₂), -CH₂·(p-C₆H₄)· C(CH₃)₃ (ABuBMAH₂) and -CH₂·C₁₀H₇ (ANMAH₂). The isomeric species in the complex products have been separated using cation exchange chromatography and each isomer has been characterized using NMR and circular dichroism techniques. In each synthesis the major isomeric product obtained has a Λ-β₁ topology. However, where ARMAH₂ possesses a lengthy alkyl sidechain trace amounts of Δ-α-[Co(R,R-picchxn)(ARMA)]⁺ isomers have been observed during the synthetic reactions. This unusual isomeric form readily undergoes inversion of its absolute configuration in DMSO solution to yield the more thermodynamically stable Λ-β₁-[Co(R,R-picchxn()R-ARMA)]⁺ species stereospecifically.In the case of Λ-β₁-[Co(R,R,-pichxn)(S-APMA)]ClO₄·2NaClO₄·5H₂O the crystal structure has been determined. The compound crystallises in the orthorhombic space group P2₁2₁2₁, with a = 10.056(3),b = 16.475(7),c = 23.370(7)Å and Z = 4. The structure was refined to R = 0.079 for 4460 non-zero reflexions, and confirms the absolute configuration of each chiral centre to be consistent with the NMR and circular dichroism interpretations.The decar☐ylation of these chelate ARMAH₂ derivatives under acid conditions leads to corresponding complexes containing mixtures of coordinated R-andS-α-aminoacids in various ratios. This ratio has been determined in each case, and factors which may influence the degree of chiral induction observed are discussed.     

The base-catalyzed isomerization of trans-RCo(H2O)L (L=5,7,7,12,14,14-hexamethyl-1,4,8,11-tetraazacyclotetradeca-4,11-diene)

The sec, rac-CH₃Co(H₂O)L²⁺ (L=5,7,7,12,14,14-hexamethyl-1,4,8,11-tetraazacyclotetradeca-4,11-diene) was prepared successfully via meso-CH₃Co(H₂O)L²⁺ in aqueous solution. The isomerizations from meso-RCo(H₂O)L²⁺ (R=CH₃, C₂H₅ and C₃H₇) and sec, rac-CH₃Co(H₂O)L²⁺ to pri, rac-RCo(H₂O)L²⁺ were both base catalyzed in aqueous solution. The kinetic results showed the reaction to be first order in both organocobalt complex and hydroxide ion with the reactivity order for the alkyl group being C₃H₇ ∼ C₂H₅ ? CH₃. However, the conversion from the most steric hindered isomer form of sec, rac- was slow. The ratio of the isomerization rate constants between meso-CH₃Co(H₂O)L²⁺ and sec, rac-CH₃Co(H₂O)L²⁺ to pri, rac-CH₃Co(H₂O)L²⁺ is almost a factor of 100. The thermodynamic activation parameters for these isomerization reactions were investigated.     

Daily variations in the thermoregulatory behaviors of naked neck broilers in an equatorial semi-arid environment

The aim of this study was to evaluate the daily variations in the thermoregulatory behavior of 4- to 6-week-old naked neck broilers (Label Rouge) in an equatorial semi-arid environment. A total of 220 birds were monitored for 5 days starting at 0600 hours and ending at 1800 hours. The period of observation was divided into classes of hours (C _H). The observed behaviors were as follows: feed and water intake, wing-spreading, sitting or lying, and beak-opening. A total of 14,300 behavioral data values were registered. In C _H 2 (0900 hours to 1100 hours) and 3 (1200 hours to 1500 hours), the greatest average body surface temperature was recorded (34.67?±?0.25 °C and 35.12?±?0.22 °C, respectively). The C _H had an effect on the exhibition of all behaviors with the exception of the water intake behavior. Feed intake was more frequent in C _H 1 (0600 hours to 0800 hours) and 4 (1600 hours to 1800 hours). In C _H 2 and 3, the highest frequency of sitting or lying behavior was observed. Beak-opening and wing-spreading behaviors occurred more frequently in C _H 3 where the body surface temperature (35.12?±?0.22 °C), radiant heat load (519.38?±?2.22 W m^?2), and enthalpy (82.74?±?0.36 kJ kg^?1 of dry air) reached maximum recorded averages. Thus, it can be concluded that naked neck broilers adjust their behavior in response to daily variations in the thermal environment. Wing-spreading and beak-opening behaviors are important adaptive responses to the thermal challenges posed by the equatorial semi-arid environment.     

Preparation of new tetraaza macrocyclic nickel(II) and copper(II) complexes bearing N-propionic methyl ester groups

A 14-membered tetraaza macrocycle, 2,13-bis(2-carbomethoxyethyl)-5,16-dimethyl-2,6,13,17-tetraazatricyclo[16.4.0.^1.180^7.12]docosane (L²) bearing two N-CH₂CH₂COOMe groups, and its nickel(II) and copper(II) complexes have been prepared and characterized. The nickel(II) and copper(II) complexes of 2-(2-carbomethoxyethyl)-5,16-dimethyl-2,6,13,17-tetraazatricyclo[16.4.0.^1.180^7.12]docosane (L³) containing one N-CH₂CH₂COOMe group have also been prepared. The crystal structure of [NiL²](ClO₄)₂ shows that the complex has a slightly distorted trans-octahedral coordination geometry with two relatively short axial Ni-O (N-CH₂CH₂COOMe group) bonds (2.136(3) Å). In various solvents, however, a considerable proportion of [NiL²]²⁺ exists as a square-planar form, in which the functional pendant arms are not involved in coordination. The proportion of the square-planar isomer varies with solvents in the order of nitromethane ? acetonitrile < H₂O < DMF ? DMSO. In the case of [CuL²](ClO₄)₂, only one N-CH₂CH₂COOMe group is involved in coordination. The N-CH₂CH₂COOMe group of [NiL³](ClO₄)₂ is not directly involved in coordination even in the solid state, though the functional group of [CuL³](ClO₄)₂ is coordinated to the metal ion.     

Enzymatic preparation of high specific activity radiolabeled (I)-L-5-methyltetrahydropteroylglutamate

5-CH₃[G-³H]H₄PteGlu (sp act 5.0 Ci/nmol) was synthesized by direct enzymatic reduction of [G-³H]PteGlu by dihydropteroylglutamate reductase to H₄PteGlu. The latter was reacted with formaldehyde to give 5,10-CH₂-H₄-PteGlu which was reduced to the final product by sodium borohydride. A single chromatographic step on TEAE-cellulose afforded 5-CH₃[G-³H]H₄PteGlu in high yield at a radiochemical purity of about 99%.     

STUDIES OF A CHEMICALLY MODIFIED OLIGODEOXYNUCLEOTIDE CONTAINING A 5-ATOM AMIDE BACKBONE WHICH EXHIBITS IMPROVED BINDING TO RNA

Chimeric oligodeoxyribonucleotides where the phosphodiester linkage -C3′-O-PO_2^? -O-CH₂-C4′- of DNA is substituted by the amide linkage -C3′-CH₂-CH^*(CH₃)-CO-NH-CH₂-C4′ (^*either R or S stereochemistry) have been prepared and their binding to RNA targets have been investigated. Incorporation of a single amide unit increases the T_m by approximately 1.4–1.9°C. Circular dichroic spectra of these modified duplexes are similar to the wildtype DNA/RNA.     

Association Constants for Metal Hexacyanide Binding to Cytochrome c

The binding of[Co(CN)₆]^3?, and that of[Fe(CN)₆]^3? and [Ru(CN)₆]^4? using a competitive method, to horse cytochrome c has been studied by ⁵⁹ Co NMR spectroscopy. At I = 0.07 M, without added salt and in ²H₂O at ph* 7.3 (measured in ²H₂O) and 25°C, there are at least two binding sites on ferricytochrome c and ferrocytochrome c for [Co(CN)₆]^3?. Association constants were determined to be 2.0 ± 0.6 × 10³M^?1 and 1.5 ± 0.5 × 10²M^?1 respectively. with no effect of the oxidation state of the cytochrome. At higher ionic strength (I = 0.12 M adjusted with KCl the binding markedly decreased, and, although it was not possible to determine the precise binding stoichiometry and magnitude of association constants, it is clear that the association constants are ≤ 1.5 × 10^tM^?1 The binding of [Ru(CN)₆]^4? at I = 0.07, without added salt and in ²H₂O at pH 1.3 and 23°C, was not precisely defined, but its binding strength relative to that of [Fe(CN)₆]^3? was determined. Extrapolating this to I = 0.12 (KCl) suggests that under these conditions the association constant for [Ru(CN)₆]^4? binding to ferricytochrome c is ≤ 3 × 10²M^?1.     

Carbon Dioxide and Methane Fluxes From Tree Stems,Coarse Woody Debris,and Soils in an Upland Temperate Forest

Forest soils and canopies are major components of ecosystem CO₂ and CH₄ fluxes. In contrast, less is known about coarse woody debris and living tree stems, both of which function as active surfaces for CO₂ and CH₄ fluxes. We measured CO₂ and CH₄ fluxes from soils, coarse woody debris, and tree stems over the growing season in an upland temperate forest. Soils were CO₂ sources (4.58 ± 2.46 µmol m^?2 s^?1, mean ± 1 SD) and net sinks of CH₄ (?2.17 ± 1.60 nmol m^?2 s^?1). Coarse woody debris was a CO₂ source (4.23 ± 3.42 µmol m^?2 s^?1) and net CH₄ sink, but with large uncertainty (?0.27 ± 1.04 nmol m^?2 s^?1) and with substantial differences depending on wood decay status. Stems were CO₂ sources (1.93 ± 1.63 µmol m^?2 s^?1), but also net CH₄ sources (up to 0.98 nmol m^?2 s^?1), with a mean of 0.11 ± 0.21 nmol m^?2 s^?1 and significant differences depending on tree species. Stems of N. sylvatica, F. grandifolia, and L. tulipifera consistently emitted CH₄, whereas stems of A. rubrum, B. lenta, and Q. spp. were intermittent sources. Coarse woody debris and stems accounted for 35% of total measured CO₂ fluxes, whereas CH₄ emissions from living stems offset net soil and CWD CH₄ uptake by 3.5%. Our results demonstrate the importance of CH₄ emissions from living stems in upland forests and the need to consider multiple forest components to understand and interpret ecosystem CO₂ and CH₄ dynamics.     

Kinetics of reduction of ferrioxamine B by chromium(II), vanadium(II), and dithionite

Kinetic studies of the reduction of ferrioxamine B (Fe(Hdesf)⁺) by Cr(H₂O)₆²⁺, V(H₂O)₆²⁺, and dithionite have been performed. For Cr(H₂O)₆²⁺ and V(H₂O)₆²⁺, the rate is ?d[Fe(Hdesf)⁺]/dt = k[Fe(Hdesf)⁺][M²⁺]. For Cr(H₂O)₆²⁺, k = 1.19 × 10⁴ M^?1 sec^?1 at 25°C and μ = 0.4 M, and k is independent of pH from 2.6 to 3.5. For V(H₂O)₆²⁺, k = 6.30 × 10² M^?1 sec^?1 at 25°C, μ = 1.0 M, and pH = 2.2. The rate is nearly independent of pH from 2.2 to 4.0. For Cr(H₂O)₆²⁺ and V(H₂O)₆²⁺, the activation parameters are ΔH^≠ = 8.2 kcal mol^?1, ΔS^≠ ?12 eu and ΔH^≠ = 1.7 kcal mol^?1, ΔS^≠ = ?40 eu (at pH 2.2) respectively. Reduction by Cr(H₂O)₆²⁺ is inner-sphere, while reduction by V(H₂O)₆²⁺ is outer-sphere. Reduction by dithionite follows the rate law ?d[Fe(Hdesf)⁺]/dt =kK^{$\text{1}\text{2}$}[Fe(Hdesf)⁺][S₂O₄^2?]^{$\text{1}\text{2}$} where K is the equilibrium constant for dissociation of S₂O₄^2? into SO₂^? radicals. The value of k at 25°C and μ = 0.5 is 2.7 × 10³ M^?1 sec^?1 at pH 5.8, 3.5 × 10³ M^?1 sec^?1 at pH 6.8, and 4.6 × 10³ M^?1 sec^?1 at pH 7.8, and ΔH^≠ = 6.8 kcal mol^?1 and ΔS^≠ = ?19 eu at pH 7.8.     

An assessment of thermodynamic reaction constants for simulating aqueous environmental monomethylmercury speciation

ABSTRACT

Monomethylmercury (CH₃Hg ⁺) is both the most ecologically significant and the least well characterized species of mercury in environmental settings. Our understanding of the environmental speciation behavior of this compound is limited both as the result of lesser available laboratory data (when compared to inorganic mercury) as well as the uncertainties associated with our understanding of the properties of environmental ligands. A careful examination and synthesis of data reported in the technical literature led to the following findings: (1) a 25°C, zero ionic strength bicarbonate ion complexation constant estimate is remarkably close to an earlier reported value at 0.4 M: CH₃Hg⁺ + HCo₃^-?CH₃HgHCO₃,log₁₀K = 2.6 (±0.22, 1 SD), (2) three 25°C zero ionic strength reaction constants reported by DeRobertis et al.(1998) were confirmed to within ~±0.1 log₁₀K units: CH₃Hg ⁺+ OH^-?CH₃HgOH, log₁₀K = 9.47; 2CH₃Hg ⁺ + H₂O?(CH₃Hg)₂OH ⁺ + H⁺, log₁₀K =?2.15; CH₃Hg ⁺+ Cl^-?CH₃HgCl, log₁₀K = 5.45, (3) “best estimate” literature complexation constants corrected to zero ionic strength include: CH₃Hg ⁺ + F^-?CH₃HgF, log₁₀K = 1.75 (20°C corr. Schwart-zenbach and Schellenberg, 1965); CH₃Hg ⁺ + Br^-?CH₃HgBr, log₁₀K = 6.87 (20°C corr. Schwartzenbach and Schellenberg, 1965); CH₃Hg ⁺ +1^-?CH₃HgI, log₁₀K = 8.85 (20°C corr. Schwartzenbach and Schellenberg, 1965); and CH₃Hg ⁺+ SO₄^2-?CH₃HgSO₄^-,log₁₀K = 2.64 (25°C, DeRobertis et al., 1998), (4) literature reported values for simulating monomethylmercury complexation with the carbonate ion may be too low: CH₃Hg ⁺+ CO₃^2-?CH₃HgCO₃^-, log₁₀K = 6.1 (Rabenstein et al., 1976; Erni, 1981), and (5) ‘‘best estimate’’ constants for simulating methyl mercury complexation with reduced environmental sulfur species include: CH₃Hg ⁺ + S^2-?CH₃HgS ^-, log₁₀K = 21.1; CH³Hg ⁺+ SH ^-? CH3HgSH, log₁₀K = 14.5 (H ⁺ + SH^-?CH₂S, log₁₀K = 6.88; Dyrssen and Wedborg, 1991); CH₃Hg ⁺ + RS^-?CH₃HgSR, log₁₀K = 16.5 (H + + RS^-?RSH, log₁₀K = 9.96; Qian et al., 2002); and CH₃Hg ⁺+ CH₃HgS^{1 -}?(CH₃Hg)₂S, log₁₀K = 16.32 (Schwartzenbach and Schellenberg, 1965; Rabenstein et al., 1978; and Erni, 1981).     

High-pressure liquid chromatography separation and determination of rat liver folates

The endogenous levels of the various folate compounds in rat liver were determined using high-pressure liquid chromatography for the rapid separation of folate monoglutamate forms with specific quantitation of the folates by microbiological analysis of eluted fractions. The eight folate derivatives that were assayable were tetrahydrofolic acid (H₄PteGlu), 5-methyl-H₄PteGlu, 10-formyl-H₄PteGlu, 5-formyl-H₄PteGlu, 5,10-methenyl-H₄PteGlu, 5,10-methylene-H₄PteGlu, H₂PteGlu, and PteGlu. New techniques for the preparation of tissues were developed in order to reduce the degradation of the folates. Tissue folates were converted to the monoglutamate form by a partially purified hog kidney polyglutamate hydrolase preparation and incubations were carried out at pH 6.0. This minimized folate degradation but still allowed for maximal polyglutamate hydrolase activity. Rapid removal of tissues was compared with freeze-clamping techniques. The major folates in rat liver were H₄PteGlu and 5-methyl-H₄PteGlu, comprising 42 and 39%, respectively, of the total liver folate pool of 27.30 nmol/g liver (about 13 μg/g liver). In addition, 10-formyl-H₄PteGlu and 5-formyl-H₄PteGlu each comprised 10% of the total folate pool. No endogenous PteGlu, H₂PteGlu, or 5,10-methylene-H₄PteGlu was detected in rat liver samples under our conditions. Distribution of ¹⁴C derived from a previous [¹⁴C]folic acid injection paralleled the distribution of folate as determined microbiologically after high-pressure liquid chromatography separation. The importance of these methods for the direct determination and estimation of flux of H₄PteGlu, 5-methyl-H₄PteGlu, and 10-formyl-H₄PteGlu in studies dealing with the folate system was emphasized.