On the elementary units of multicellularity and their classification in the shape of a periodic table

An approach to calculation of a space of logical possibilities in the development of multicellular organisms is proposed. The approach is based on formalized analysis of cell specialization/integration, which produces multicellularity units called hystions. Certain parameters and criteria for determination of quantitative developmental characteristics are introduced. They allow the space described to be systematized in the shape of a periodic table and divided into plastic, adaptive, and rigid zones. These zones are described quantitatively.     

Integral Periodization of General Psychological Development

The desire to generalize current knowledge of the phased structure of human psychological development into a unified sequence that covers various stages of the developmental process as well as its mechanisms will continue to occupy psychologists until they construct this synthetic depiction. Such a universal schema could play a role in developmental psychology similar to that of the evolutionary tree in biology or the periodic table in chemistry—the role of pointing up the gaps in our knowledge. If a general picture of development is constructed, psychologists and educational theorists would be able to see the blanks or gaps, in the cultural and educational spaces that they construct in order to support optimal ways of facilitating human development at different ages (from the standpoint of particular cultural values).     

D-type cyclins control cell division and developmental rate during Arabidopsis seed development

Seed development in Arabidopsis is characterized by stereotypical division patterns, suggesting that coordinated control of cell cycle may be required for correct patterning and growth of the embryo and endosperm. D-type cyclins (CYCD) are key cell cycle regulators with roles in developmental processes, but knowledge regarding their involvement in seed development remains limited. Here, a family-wide gene expression, and loss- and gain-of-function approach was adopted to reveal additional functions for CYCDs in the development of seed tissues. CYCD genes have both discrete and overlapping tissue-specific expression patterns in the seed as revealed by GUS reporter gene expression. Analysis of different mutant combinations revealed that correct CYCD levels are required in seed development. The CYCD3 subgroup is specifically required as its loss caused delayed development, whereas overexpression in the embryo and endosperm of CYCD3;1 or a previously uncharacterized gene, CYCD7;1, variously leads to induced proliferation, abnormal phenotypes, and elevated seed abortion. CYCD3;1 overexpression provoked a delay in embryonic developmental progression and abnormalities including additional divisions of the hypophysis and suspensor, regions where CYCD3 genes are normally expressed, but did not affect endosperm development. Overexpression of CYCD7;1, not normally expressed in seed development, promoted overgrowth of both embryo and endosperm through increased division and cell enlargement. In contrast to post-germination growth, where pattern and organ size is not generally related to division, results suggest that a close control of cell division through regulation of CYCD activity is important during seed development in conferring both developmental rate and correct patterning.     

The next step in biology: a periodic table?

Systems biology is an approach to explain the behaviour of a system in relation to its individual components. Synthetic biology uses key hierarchical and modular concepts of systems biology to engineer novel biological systems. In my opinion the next step in biology is to use molecule-to-phenotype data using these approaches and integrate them in the form a periodic table. A periodic table in biology would provide chassis to classify, systematize and compare diversity of component properties vis-a-vis system behaviour. Using periodic table it could be possible to compute higher- level interactions from component properties. This paper examines the concept of building a bio-periodic table using protein fold as the fundamental unit.     

Culture pH, CO2 tension, and cell division in Euglena gracilis Z.

Growth characteristics of Euglena gracilis Z as functions of culture pH, CO2 tension, temperature, and lighting regime were investigated. The results are consistent with the possibility that cell division is preceded by a lowered intracellular pH. Also consistent with this possibility is the finding that division rhythmicity can be induced by periodic changes in CO2 tension. It is suggested that the rhythmicity is induced by changes in intracellular pH produced by carbonic acid.     

The next step in biology: A periodic table?

Systems biology is an approach to explain the behaviour of a system in relation to its individual components. Synthetic biology uses key hierarchical and modular concepts of systems biology to engineer novel biological systems. In my opinion the next step in biology is to use molecule-to-phenotype data using these approaches and integrate them in the form a periodic table. A periodic table in biology would provide chassis to classify, systematize and compare diversity of component properties vis-a-vis system behaviour. Using periodic table it could be possible to compute higher-level interactions from component properties. This paper examines the concept of building a bio-periodic table using protein fold as the fundamental unit.     

Causal relations among cell cycle processes in Tetrahymena pyriformis. An analysis employing temperature-sensitive mutants

Utilization of temperature-sensitive mutants of Tetrahymena pyriformis affected in cell division or developmental pathway selection has permitted elucidation of causal dependencies interrelating micronuclear and macronuclear replication and division, oral development, and cytokinesis. In those mutants in which cell division is specifically blocked at restrictive temperatures, micronuclear division proceeds with somewhat accelerated periodicity but maintains normal coupling to predivision oral development. Macronuclear division is almost totally suppressed in an early acting mutant (mola) that prevents formation of the fission zone, and is variably affected in other mutants (such as mo3) that allow the fission zone to form but arrest constriction. However, macronuclear DNA synthesis can proceed for about four cycles in the nondividing mutant cells. A second class of mutants (psm) undergoes a switch of developmental pathway such that cells fail to enter division but instead repeatedly carry out an unusual type of oral replacement while growing in nutrient medium at the restrictive temperature. Under these circumstances no nuclei divide, yet macronuclear DNA accumulation continues. These results suggest that (a) macronuclear division is stringently affected by restriction of cell division, (b) micronuclear division and replication can continue in cells that are undergoing the type of oral development that is characteristic of division cycles, and (c) macronuclear DNA synthesis can continue in growing cells regardless of their developmental status. The observed relationships among events are consistent with the further suggestion that the cell cycle in this organism may consist of separate clusters of events. with a varying degree of coupling among clusters. A minimal model of the Tetrahymena cell cycle that takes these phenomena into account is suggested.     

海南五指山热带山地雨林主要种群结构特征分析

对海南五指山热带山地雨林线枝蒲桃、毛荔枝、鸭脚木、谷木、山苦茶和海南柿６ 个主要种群进行年龄结构分析,结果表明这６ 个种群均为增长型结构,现处于发展阶段．这些种群的发展状况将直接决定五指山热带山地雨林未来的类型．同时对其中的线枝蒲桃进行静态生命表和波谱分析,结果表明线枝蒲桃种群的动态过程存在周期性,其更新与林窗有密切关系．     

Vegetation dynamics induced by phreatophyte--aquifer interactions

The dynamics of phreatophyte vegetation are strongly coupled to those of the shallow phreatic aquifers from which phreatophytes extract water. Vegetation is able to influence the depth of the water table, which, in turn, can induce stress in vegetation. These interactions are likely to affect the composition and structure of phreatophyte plant communities, as well as their successional dynamics. Despite the environmental and economical value of many wetland plant ecosystems around the world, the impact of vegetation-water table interactions on ecosystem succession and interspecies competition in phreatophyte plant communities remains poorly understood. This study develops a minimalistic modelling framework to investigate the dynamics of two phreatophyte species, and their interactions with the water table. In spite of its simplicity, the model exhibits a remarkable variety of dynamical behaviors, especially when the water table depth is forced by external drivers. It is shown that, even when one of the two species is dominant with respect to the other, these two species can coexist showing periodic, quasi-periodic, and chaotic dynamics. Moreover, in the presence of a random environmental forcing, noise-induced coexistence may emerge.     

A simple model for cell volume and developmental compartments in nutrient limited cyclostat cultures of algae

Daily light-dark cycles can entrain cell growth and division cycles in populations of algae growing in nutrient limited continuous cultures, or cyclostats. In this study a simple model for the flux of cells between discrete developmental stages is formulated for periodic cyclostat cultures of algae. Cell growth, in terms of volume, was set as being constant within a given developmental compartment, but variable between compartments. Growth within a given compartment or transition between compartments was restricted to specific intervals of the subjective day. The model was calibrated to phosphate limited cyclostat growth of Euglena gracilis, with the intervals for transition between compartments fixed at the times relative to the subjective dawn corresponding to critical transition points in the phased cell cycle of this organism. The model output for mean population volume per cell agreed well with experimental data. Although greatly simplified, the periodic behavior of the model volume frequency distributions for the discrete compartments provide reasonable approximation of experimentally determined distributions.     

Kinesin-7 CENP-E regulates cell division,gastrulation and organogenesis in development

Kinesin-7 CENP-E motor protein is essential for chromosome alignment and kinetochore-microtubule attachment in cell division. Human CENP-E has recently identified to be linked with the microcephalic primordial dwarfism syndromes associated with a smaller head, brain malformations and a prominent nose. However, the roles of CENP-E in embryonic development remain largely unknown. In this study, we find that zebrafish CENP-E inhibition results in defects in early zygote cleavage, including asymmetric cell division, cell cycle arrest and the developmental abnormalities. We also demonstrate that CENP-E ablation in cultured cells leads to chromosome misalignment, spindle abnormalities and interruptions of the cell cycle. These observations suggest that CENP-E plays a key role in early cell division and cell cycle progression. Furthermore, we also find that CENP-E inhibition results in the defects in the epiboly, the developmental arrest, the smaller head and the abnormal embryo during zebrafish embryogenesis. Our data demonstrate new functions of CENP-E in development and provide insights into its essential roles in organogenesis.     

The composition of the zebrafish intestinal microbial community varies across development

The assembly of resident microbial communities is an important event in animal development; however, the extent to which this process mirrors the developmental programs of host tissues is unknown. Here we surveyed the intestinal bacteria at key developmental time points in a sibling group of 135 individuals of a model vertebrate, the zebrafish (Danio rerio). Our survey revealed stage-specific signatures in the intestinal microbiota and extensive interindividual variation, even within the same developmental stage. Microbial community shifts were apparent during periods of constant diet and environmental conditions, as well as in concert with dietary and environmental change. Interindividual variation in the intestinal microbiota increased with age, as did the difference between the intestinal microbiota and microbes in the surrounding environment. Our results indicate that zebrafish intestinal microbiota assemble into distinct communities throughout development, and that these communities are increasingly different from the surrounding environment and from one another.     

RCD1 and SRO1 are necessary to maintain meristematic fate in Arabidopsis thaliana

The radical-induced cell death1 and similar to RCD ONE1 genes of Arabidopsis thaliana encode members of the poly(ADP-ribose) polymerase (PARP) superfamily and have pleiotropic functions in development and abiotic stress response. In order to begin to understand the developmental and molecular bases of the defects seen in rcd1-3; sro1-1 plants, this study used the root as a model. Double mutant roots are short and display abnormally organized root apical meristems. However, acquisition of most cell fates within the root is not significantly disrupted. The identity of the quiescent centre is compromised, the zone of cell division is smaller than in wild-type roots and abnormal divisions are common, suggesting that RCD1 and SRO1 are necessary to maintain cells in a division-competent state and to regulate division plane placement. In addition, differentiation of several cell types is disrupted in rcd1-3; sro1-1 roots and shoots, demonstrating that RCD1 and SRO1 are also necessary for proper cell differentiation. Based on the data shown in this article and previous work, we hypothesize that RCD1 and SRO1 are involved in redox control and, in their absence, an altered redox balance leads to abnormal development.     

Genome-wide gene expression profiles in response to plastid division perturbations

Plastids are vital organelles involved in important metabolic functions that directly affect plant growth and development. Plastids divide by binary fission involving the coordination of numerous protein components. A tight control of the plastid division process ensures that: there is a full plastid complement during and after cell division, specialized cell types have optimal plastid numbers; the division rate is modulated in response to stress, metabolic fluxes and developmental status. However, how this control is exerted by the host nucleus is unclear. Here, we report a genome-wide microarray analysis of three accumulation and replication of chloroplasts (arc) mutants that show a spectrum of altered plastid division characteristics. To ensure a comprehensive data set, we selected arc3, arc5 and arc11 because they harbour mutations in protein components of both the stromal and cytosolic division machinery, are of different evolutionary origin and display different phenotypic severities in terms of chloroplast number, size and volume. We show that a surprisingly low number of genes are affected by altered plastid division status, but that the affected genes encode proteins important for a variety of fundamental plant processes.     

Emergence and patterning of the five cell types of the Zea mays anther locule

One fundamental difference between plants and animals is the existence of a germ-line in animals and its absence in plants. In flowering plants, the sexual organs (stamens and carpels) are composed almost entirely of somatic cells, a small subset of which switch to meiosis; however, the mechanism of meiotic cell fate acquisition is a long-standing botanical mystery. In the maize (Zea mays) anther microsporangium, the somatic tissues consist of four concentric cell layers that surround and support reproductive cells as they progress through meiosis and pollen maturation. Male sterility, defined as the absence of viable pollen, is a common phenotype in flowering plants, and many male sterile mutants have defects in somatic and reproductive cell fate acquisition. However, without a robust model of anther cell fate acquisition based on careful observation of wild-type anther ontogeny, interpretation of cell fate mutants is limited. To address this, the pattern of cell proliferation, expansion, and differentiation was tracked in three dimensions over 30 days of wild-type (W23) anther development, using anthers stained with propidium iodide (PI) and/or 5-ethynyl-2′-deoxyuridine (EdU) (S-phase label) and imaged by confocal microscopy. The pervading lineage model of anther development claims that new cell layers are generated by coordinated, oriented cell divisions in transient precursor cell types. In reconstructing anther cell division patterns, however, we can only confirm this for the origin of the middle layer (ml) and tapetum, while young anther development appears more complex. We find that each anther cell type undergoes a burst of cell division after specification with a characteristic pattern of both cell expansion and division. Comparisons between two inbreds lines and between ab- and adaxial anther florets indicated near identity: anther development is highly canalized and synchronized. Three classical models of plant organ development are tested and ruled out; however, local clustering of developmental events was identified for several processes, including the first evidence for a direct relationship between the development of ml and tapetal cells. We speculate that small groups of ml and tapetum cells function as a developmental unit dedicated to the development of a single pollen grain.     

新疆生产建设兵团生态系统服务价值时空分异特征

依据2000年和2010年新疆生产建设兵团(以下简称新疆兵团)土地利用数据,利用中国陆地生态系统单位面积生态服务价值当量表,分析了新疆兵团生态服务价值的时空分异特征。结果表明:2000—2010年全兵团单位面积生态服务价值增加了204.61元hm-2a-1,年增长率为0.41%,耕地和林地生态服务价值呈增长趋势,草地、水域、湿地、未利用地生态系统服务价值呈减少趋势;2010年各师单位面积的生态系统服务价值差别很大,其基本规律为一师六师十师四师九师八师五师十四师七师二师十二师三师十三师,这与不同土地利用类型生态服务价值指数的差别和各师的土地利用程度存在密切关系;一师、二师、四师、六师、七师、八师、十师、十二师单位面积生态服务价值呈增加趋势,三师、五师、九师、十三师、十四师单位面积生态服务价值呈减少趋势;人为开垦是该区域生态系统服务价值时空动态变化的主要驱动因素。     

Principles and roles of mRNA localization in animal development

Intracellular targeting of mRNAs has long been recognized as a means to produce proteins locally, but has only recently emerged as a prevalent mechanism used by a wide variety of polarized cell types. Localization of mRNA molecules within the cytoplasm provides a basis for cell polarization, thus underlying developmental processes such as asymmetric cell division, cell migration, neuronal maturation and embryonic patterning. In this review, we describe and discuss recent advances in our understanding of both the regulation and functions of RNA localization during animal development.     

Applying the handicap principle to biofilms: condition-dependent signalling in Bacillus subtilis microbial communities

Bacteria in nature often reside in differentiated communities termed biofilms. These communities, which are composed of a number of functionally-distinct cell types, are an interesting example of division of labour in microbes, and as such have been used as a system to study the evolution of cooperation. The structured population of the biofilm also plays a critical role in the persistence of infections, and biofouling of medical and industrial devices. Biofilm formation involves several stages of differentiation, which are mediated by extracellular factors secreted by cells composing the biofilm. The developmental model of biofilm formation describes this process mechanistically: specific subpopulations of cells synthesize signals within the biofilm, and promote the differentiation of other subpopulations. The handicap principle suggests that signals function because they provide reliable information regarding the state of the signaller; here, we apply the handicap principle to signalling among cells composing Bacillus subtilis biofilms, emphasizing the perspective of secreted factors as sources of information rather than solely as mediators of development. Such information could facilitate competition among phenotypically-similar cells composing the biofilm, affecting local organizational patterns within defined subpopulations.