Genome Sequence of Thalassospira xiamenensis Type Strain M-5

Thalassospira xiamenensis M-5^T was isolated from the surface water of a waste oil pool at the oil storage dock in the city of Xiamen, Fujian Province, China. Here, we present the draft genome of strain M-5^T, which contains 4,705,237 bp with a G+C content of 54.65% and contains 4,343 protein-coding genes and 46 tRNA genes.     

Microbiological Degradation of Malodorous Substances of Swine Waste under Aerobic Conditions

Phenol, p-cresol, and volatile fatty acids (VFA; acetic, propionic, isobutyric, butyric, isovaleric, and valeric acids) were used as odor indicators of swine waste. Aeration of the waste allowed the indigenous microorganisms to grow and degrade these malodorous substances. The time required for degradation of these substances varied according to the waste used, and it was not necessarily related to their concentrations. Using a minimal medium which contained one of the malodorous compounds as sole carbon source, we have selected from swine waste microorganisms that can grow in the medium. The majority of these microorganisms were able to degrade the same substrate when inoculated in sterilized swine waste but with an efficiency varying from one strain to the other. None of these strains was able to degrade all malodorous substances studied. Within 6 days of incubation these selected strains degraded the following: Acinetobacter calcoaceticus, phenol and all VFA; Alcaligenes faecalis, p-cresol and all VFA; Corynebacterium glutamicum and Micrococcus sp., phenol, p-cresol, and acetic and propionic acids; Arthrobacter flavescens, all VFA. On a laboratory scale, the massive inoculation of swine waste with C. glutamicum or Micrococcus sp. accelerated degradation of the malodorous substances. However, this effect was not observed with all of the various swine wastes tested. These results suggest that an efficient deodorization process of various swine wastes could be developed at the farm level based on the aerobic indigenous microflora of each waste.     

Production of compost from marine waste: evaluation of the product for use in ecological agriculture

The sea contains large amounts of resources that are sometimes considered as waste. Such material includes the waste generated by the fish-processing industry and seaweed that is washed up on shores. In this study, these waste products were windrow composted, along with pine bark as a source of carbon and aeration. The final mix proportions were 20 % seaweed, 20 % fish waste, and 60 % pine bark (v/v). After 10 weeks, stable, well-structured, hygienic compost, which was rich in organic matter and nutrients and had a low metal content, was obtained. Tests for maturity, hygiene, and phytotoxicity, along with a detailed physical and chemical characterization, showed that this compost can be used as an organic amendment and/or growth substrate for use in ecological agriculture. The only limiting feature was the high salinity, which could easily be lowered prior to composting the material.     

Enterobacteria in feedlot waste and runoff

Samples of beef cattle feedlot waste (FLW), runoff from the pens, and water from a large drainage ditch at the feedlot were examined for Enterobacteriaceae. The drainage ditch receives the runoff but contains primarily subsurface drainage from fields on which FLW is spread for disposal. Planting and enrichment techniques with seven different media were used to isolate 553 cultures of enterobacteria. FLW contains about 50 million enterobacteria/g dry weight. More than 90% of these were Escherichia coli, none of which were enteropathogenic types as determined with multivalent sera. Citrobacter and Enterobacter cloacae were other organisms present in moderate numbers. Application of enrichment techniques broadened the spectrum of enterobacteria isolates to include the four Proteus spp., both Providencia spp., Klebsiella, Enterobacter aerogenes, Arizona, and a single isolate of Salmonella (serological group C₂). Shigella was not isolated. The wide spectrum of enterobacteria in FLW may be a hazard if unsterilized waste is refed. Fewer enterobacteria occurred in the runoff and in the drainage ditch; the most numerous species in FLW also were most numerous at these sites. However, neither Salmonella nor Arizona was isolated from runoff or drainage-ditch waters.     

Reduction of pollutant parameters of leaf protein concentrate by-product by microbial fermentation

Deproteinised juice (DLJ) is left as a waste of a leaf protein concentrate (LPC) production plant. As it contains carbohydrates, nitrogenous compounds, lipids, minerals, and vitamins, its values of chemical oxygen demand (COD) and biological oxygen demand (BOD) are high enough to pose a serious disposal problem. But this waste, due to its nutrient content, is suitable for microbial growth. The growth of a number of filamentous fungi such as Rhizopus arrhizus, Aspergillus japonicus, and Trichoderma viride have been studied in different DLJ samples from different plants, such as cowpea, winged bean, radish, and turnip. The biomasses of fungi have been harvested and found to contain a large amount of protein. The fungi were found to reduce the high COD and BOD values of the DLJ samples, indicating the possibility of large scale use of this liquid waste as a fermentation medium.     

Biological Control of Hog Waste Odor through Stimulated Microbial Fe(III) Reduction

Odor control and disposal of swine waste have inhibited expansion of swine production facilities throughout the United States. Swine waste odor is associated primarily with high concentrations of volatile fatty acids (VFAs). Here, we demonstrate that stimulated Fe(III) reduction in hog manure can rapidly remove the malodorous compounds and enhance methane production by 200%. As part of these studies, we enumerated the indigenous Fe(III)-reducing population in swine waste and identified members of the family Geobacteraceae as the dominant species. These organisms were present at concentrations as high as 2 × 10⁵ cells g⁻¹. Several pure cultures of Fe(III) reducers, including Geobacter metallireducens, Geobacter humireducens, Geobacter sulfurreducens, Geobacter grbiciae, Geothrix fermentans, and Geovibrio ferrireducens, readily degraded some or all of the malodorous VFAs found in swine manure. In contrast, Shewanella algae did not degrade any of these compounds. We isolated an Fe(III) reducer, Geobacter strain NU, from materials collected from primary swine waste lagoons. This organism degraded all of the malodorous VFAs tested and readily grew in swine waste amended with Fe(III). When raw waste amended with Fe(III) was inoculated with strain NU, the VFA content rapidly decreased, corresponding with an almost complete removal of the odor. In contrast, the raw waste without Fe(III) or strain NU showed a marked increase in VFA content and a rapid pH drop. This study showed that Fe(III) supplementation combined with appropriate bioaugmentation provides a simple, cost-effective approach to deodorize and treat swine waste, removing a significant impediment to the expansion of pork production facilities.     

Increased Levels of Markers of Microbial Exposure in Homes with Indoor Storage of Organic Household Waste

As part of environmental management policies in Europe, separate collection of organic household waste and nonorganic household waste has become increasingly common. As waste is often stored indoors, this policy might increase microbial exposure in the home environment. In this study we evaluated the association between indoor storage of organic waste and levels of microbial agents in house dust. The levels of bacterial endotoxins, mold β(1→3)-glucans, and fungal extracullar polysaccharides (EPS) of Aspergillus and Penicillium species were determined in house dust extracts as markers of microbial exposure. House dust samples were collected in 99 homes in The Netherlands selected on the basis of whether separated organic waste was present in the house. In homes in which separated organic waste was stored indoors for 1 week or more the levels of endotoxin, EPS, and glucan were 3.2-, 7.6-, and 4.6-fold higher, respectively (all P < 0.05), on both living room and kitchen floors than the levels in homes in which only nonorganic residual waste was stored indoors. Increased levels of endotoxin and EPS were observed, 2.6- and 2.1-fold (P < 0.1), respectively, when separated organic waste was stored indoors for 1 week or less, whereas storage of nonseparated waste indoors had no effect on microbial agent levels (P > 0.2). The presence of textile floor covering was another major determinant of microbial levels (P < 0.05). Our results indicate that increased microbial contaminant levels in homes are associated with indoor storage of separated organic waste. These increased levels might increase the risk of bioaerosol-related respiratory symptoms in susceptible people.     

Bioproduction of carotenoid compounds using two-phase olive mill waste as the substrate

The olive oil production process by the two-phase centrifugal system generates a waste named “alperujo”, which has a high percentage of water (65%) and contains phenolic compounds. These compounds are phytotoxic and pollute the soil and waterways, hindering the disposal of the alperujo. However, a diverse microbiota with biotechnological applications, such as the carotene-producing bacteria Microbacterium sp., was isolated from these wastes. The aim of this work was to evaluate the ability of an aqueous extract from alperujo (AE) to sustain the growth and carotene production of Microbacterium sp. in an attempt to valorize this waste. An inverse relationship between Microbacterium sp. growth and carotene production and AE concentration was observed. The bacterial growth was accompanied by a decrease in nitrogen, total sugar and glucose levels. In addition, total polyphenol content decreased, whereas pH of the AE increased. These results demonstrate that AE can be used as a substrate for carotene production, being an alternative strategy for alperujo valorization.     

城市垃圾堆肥及其复合肥对黑麦草草坪质量的影响

为加速城市生活垃圾堆肥农业资源化利用研究,避免重金属等有害物质进入食物链,利用盆栽试验,研究了垃圾堆肥及以其为原料研制而成的3种复合肥的不同施肥水平对土壤肥力,黑麦草生长及草坪质量的影响,以选取最佳的适合黑麦草生长的垃圾肥料及其施用量。共设空白、堆肥、化肥、复合肥1、复合肥2、复合肥3等6个处理,每个处理又分为高、中、低3种施肥水平,测试草坪生物指标的质量状况和土壤肥力。结果表明:与化肥比较,垃圾复合肥可以显著提高土壤有机质、全氮、碱解氮、全磷的含量。垃圾复合肥明显促进了黑麦草的茎与根系的生长,提高了生物量,改善了叶片的色泽和整齐度,提高了草坪的密度和质量;促进了黑麦草对氮的吸收,尤其是生长后期,叶片中氮和叶绿素的含量明显高于化肥与空白处理,且差异显著。草坪质量综合评价以垃圾复合肥1的中量施肥处理为最好,黑麦草分蘖最高,地上生物量适度;除复合肥的高量施肥处理外,复合肥1的中量施肥处理茎叶中氮素和叶绿素含量最高,草坪品质最高。     

Effect of Length of Time before Incorporation on Survival of Pathogenic Bacteria Present in Livestock Wastes Applied to Agricultural Soil

In response to reports that the contamination of food can occur during the on-farm primary phase of food production, we report data that describes a possible cost-effective intervention measure. The effect of time before soil incorporation of livestock wastes spread to land on the rate of decline of zoonotic agents present in the waste was investigated. Fresh livestock wastes were inoculated with laboratory-cultured Salmonella, Listeria, and Campylobacter spp. and Escherichia coli O157 before they were spead onto soil. Incorporation of the spread wastes was either immediate, delayed for 1 week, or did not occur at all. Bacterial decline was monitored over time and found to be significantly more rapid for all waste types when they were left on the soil surface. There were no significant differences in initial bacterial decline rates when wastes were spread in summer or winter. Our results indicate that not incorporating contaminated livestock wastes into soil is a potential intervention measure that may help to limit the spread of zoonotic agents further up the food chain. The implications of these findings are discussed in relation to current advice for livestock waste disposal.     

Use of a Nylon Manufacturing Waste as an Industrial Fermentation Substrate

Nonvolatile residue (NVR), a waste stream from the manufacture of nylon 6′6′, contains mainly small carboxylic acids and alcohols, making it a potential fermentation substrate. Above a concentration of 1.3% (wt/vol), NVR inhibited the growth of all microorganisms tested. The most inhibitory of the major NVR components were the monocarboxylic acids (C₄ to C₆) and ε-caprolactone. The inhibitory effects of NVR could be avoided by using a carbon-limited chemostat. Microorganisms were found that could use all of the major NVR components as carbon and energy sources. One such organism, Pseudomonas cepacia, was grown in a carbon-limited chemostat with a medium feed concentration of 20.5 g of NVR liter⁻¹. At a dilution rate of 0.14 h⁻¹ the yield of biomass (Y_x/s, where x is biomass produced and s is substrate used) from NVR was 18% (neglecting the water content of NVR). It was concluded that NVR would be a suitable carbon source for certain industrial fermentation processes such as the production of poly-β-hydroxybutyric acid.     

Life-cycle greenhouse gas inventory analysis of household waste management and food waste reduction activities in Kyoto, Japan

Purpose

Source-separated collection of food waste has been reported to reduce the amount of household waste in several cities including Kyoto, Japan. Food waste can be reduced by various activities including preventing edible food loss, draining moisture, and home composting. These activities have different potentials for greenhouse gas (GHG) reduction. Therefore, we conducted a life-cycle inventory analysis of household waste management scenarios for Kyoto with a special emphasis on food waste reduction activities.

Methods

The primary functional unit of our study was ??annual management of household combustible waste in Kyoto, Japan.?? Although some life-cycle assessment scenarios included food waste reduction measures, all of the scenarios had an identical secondary functional unit, ??annual food ingestion (mass and composition) by the residents of Kyoto, Japan.?? We analyzed a typical incineration scenario (Inc) and two anaerobic digestion (dry thermophilic facilities) scenarios involving either source-separated collection (SepBio) or nonseparated collection followed by mechanical sorting (MecBio). We assumed that the biogas from anaerobic digestion was used for power generation. In addition, to evaluate the effects of waste reduction combined with separate collection, three food waste reduction cases were considered in the SepBio scenario: (1) preventing loss of edible food (PrevLoss); (2) draining moisture contents (ReducDrain); and (3) home composting (ReducHcom). In these three cases, we assumed that the household waste was reduced by 5%.

Results and discussion

The GHG emissions from the Inc, MecBio, and SepBio scenarios were 123.3, 119.5, and 118.6 Gg CO₂-eq/year, respectively. Compared with the SepBio scenario without food waste reduction, the PrevLoss and ReducDrain cases reduced the GHG emissions by 17.1 and 0.5 Gg CO₂-eq/year. In contrast, the ReducHcom case increased the GHG emissions by 2.1 Gg CO₂-eq/year. This is because the biogas power production decreased due to the reduction in food waste, while the electricity consumption increased in response to home composting. Sensitivity analyses revealed that a reduction of only 1% of the household waste by food loss prevention has the same GHG reduction effect as a 31-point increase (from 50% to 81%) in the food waste separation rate.

Conclusions

We found that prevention of food losses enhanced by separate collection led to a significant reduction in GHG emissions. These findings will be useful in future studies designed to develop strategies for further reductions in GHG emissions.     

The bacterial mutagenicity of nitropolychlorinated dibenzo-p-dioxins

The bacterial mutagenicity of 2-nitrodibenzo-p-dioxin, a mixture of 2-nitro-7-chloro- and 2-nitro-8-chlorodibenzo-p-dioxin, 7-nitro-2,3-dichloro-, 8-nitro-2,3,7-trichloro-, 2-nitro-1,3,7,8-tetrachloro- and 3-nitro-1,2,4,7,8-pentachlorodibenzo-p-dioxin was determined using Salmonella typhimurium tester strains TA98 and TA100 with and without rat hepatic S9 for metabolic activation. All the nitro-PCDDs exhibited some direct-acting mutagenicity with both tester strains, however, the activity was significantly lowered in the presence of exogenous S9 and the compounds were more mutagenic to tester strain TA98. The mutagenicity of the nitro-PCDDs was also dependent on structure because there was a marked decrease in activity with increasing chlorine content. Because nitro-PCDDs have recently been identified as incomplete combustion products of municipal waste, this study confirms that this new class of compounds contains some bacterial mutagens.     

l-Lactate Production from Biodiesel-Derived Crude Glycerol by Metabolically Engineered Enterococcus faecalis: Cytotoxic Evaluation of Biodiesel Waste and Development of a Glycerol-Inducible Gene Expression System

Biodiesel waste is a by-product of the biodiesel production process that contains a large amount of crude glycerol. To reuse the crude glycerol, a novel bioconversion process using Enterococcus faecalis was developed through physiological studies. The E. faecalis strain W11 could use biodiesel waste as a carbon source, although cell growth was significantly inhibited by the oil component in the biodiesel waste, which decreased the cellular NADH/NAD⁺ ratio and then induced oxidative stress to cells. When W11 was cultured with glycerol, the maximum culture density (optical density at 600 nm [OD₆₀₀]) under anaerobic conditions was decreased 8-fold by the oil component compared with that under aerobic conditions. Furthermore, W11 cultured with dihydroxyacetone (DHA) could show slight or no growth in the presence of the oil component with or without oxygen. These results indicated that the DHA kinase reaction in the glycerol metabolic pathway was sensitive to the oil component as an oxidant. The lactate dehydrogenase (Ldh) activity of W11 during anaerobic glycerol metabolism was 4.1-fold lower than that during aerobic glycerol metabolism, which was one of the causes of low l-lactate productivity. The E. faecalis pflB gene disruptant (Δpfl mutant) expressing the ldhL1_LP gene produced 300 mM l-lactate from glycerol/crude glycerol with a yield of >99% within 48 h and reached a maximum productivity of 18 mM h⁻¹ (1.6 g liter⁻¹ h⁻¹). Thus, our study demonstrates that metabolically engineered E. faecalis can convert crude glycerol to l-lactate at high conversion efficiency and provides critical information on the recycling process for biodiesel waste.     

Biochar as a feed supplement for nutrient digestibility and growth performance of Catla catla fingerlings

The purpose of the current research was to determine the impact of various biochar supplements on nutrient digestibility and growth performance of Catla catla fingerlings fed on Moringa oleifera seed meal (MOSM) based diet. An experiment with 90 days of feeding was conducted to investigate the efficacy of biochar obtained from different sources such as parthenium, farmyard manure, poultry waste, vegetable waste, and corncob waste at 2 mg/kg. There were15 fingerlings in each tank in the triplicate set of tanks. Fingerlings were fed at the rate of 5 % of their live wet weight. From each tank, feces were collected twice daily and stored to determine nutrient digestibility. Results showed that poultry waste biochar (test diet-IV) at 2 mg/kg was the best source to significantly (P < 0.05) improve weight gain % (256.58 %) and feed conversion ratio (1.19) than the other biochar sources and control diet. Furthermore, in terms of nutrient digestibility, optimum fat (81.90 %), protein (75.92 %), and gross energy (74.84 kcalg^?1) values were obtained by using the same type of biochar (poultry waste). Conclusively, among all the five biochar sources, poultry waste biochar proved to be the best one, improving fish body performance.     

Use of waste Chinese cabbage as a substrate for yeast biomass production

The possibility of using waste Chinese cabbage (Brassica campestris) as a substrate for microbial biomass production was investigated. The juice from waste Chinese cabbage contains relatively high amounts of reducing sugars suitable for yeast culture. The cell mass and protein content of four species of yeast, Candida utilis, Pichia stipitis, Kluyveromyces marxianus, and Saccharomyces cerevisiae, were determined when cultured in juice extracted from cabbage waste. Compared to YM broth containing the same level of sugar, all the strains except C. utilis showed higher total protein production in cabbage juice medium (CJM).     

An improved vector for the expression of proteins in all three translational reading frames

We have constructed a novel vector (pN-7) that is capable of producing large amounts of recombinant proteins in E. coli and requires minimal manipulation for the construction of recombinant expression vectors. This expression vector (pN-7) contains the tightly regulated λ pL promoter, cII ribosome binding site, and initiator condon ATG. The pN-7 vector also contains cleavage sites for the restriction enzymes SmaI, EcoRV, and HpaI that provide blunt ends in all three reading frames. Thus after cleavage with the appropriate restriction enzyme, this novel vector can be directly ligated to the DNA fragment that contains the open reading frame without further manipulation.     

Development of an Accurate and Sensitive Diagnostic System Based on Conventional PCR for Detection of African Swine Fever Virus in Food Waste

African swine fever virus (ASFV), a highly contagious virus, can cause diseases with high mortality rates in pigs, making it a pathogen of social and economic significance. ASFV has been reported to show potential long-term survival in living livestock, such as pigs, but also in leftover cooking meat and undercooked pork meat. Hence, it is possible that there could be direct reinfection or secondary infection through feed produced from household food waste and treatment facilities. Many polymerase chain reaction (PCR)-based molecular diagnostic techniques to detect ASFV in clinical swine samples have been reported. However, those with applicability for food waste samples, which contain relatively low viral copy numbers and may contain various unknown inhibitors of PCR, are still lacking. In this study, we developed a conventional PCR-based diagnostic system that can detect ASFV with high sensitivity from food waste sample types. The technique shows a 10–100 times higher limit of detection compared to that of previously reported methods based on conventional PCR and quantitative real-time PCR. It is also capable of amplifying a sequence that is approximately 751 nucleotides, which is advantageous for similarity analysis and genotyping. Moreover, a ASFV-modified positive material different from ASFV that could synthesize 1400 nucleotide amplicons was developed to identify false-positive cases and thus enhance diagnostic accuracy. The method developed herein may be applicable for future ASFV monitoring, identification, and genotyping in food waste samples.Supplementary InformationThe online version contains supplementary material available at 10.1007/s12088-022-01007-y.     

Bio-utilization of fruits and vegetables waste to produce β-carotene in solid-state fermentation: Characterization and antioxidant activity

Fruits and vegetable processing industries produce huge waste in the form of peels, seeds, liquid, and molasses which are a good source of carbohydrates, proteins, fibres, vitamins, and minerals. This waste can be utilized for the production of biocolors using fermentation. Utilization of this waste not only valorizes waste disposal problems but also eliminate environmental pollution. The aim of the present work was to extract and optimize environmental factors for production of β-carotene from fruits and vegetable waste (orange, carrot, and papaya peels) using microbial strain Blakeslea trispora (+) MTCC 884 in solid state fermentation. It was observed that the production of β-carotene was significantly influenced by varying all factors and gave a maximum yield of 0.127 mg/mL. Characterization of the extracted color was done with techniques like HPLC, LCMS, FTIR and Mass Spectroscopy. Mass spectroscopy of extracted color represented the m/z value 537.608 and LCMS analysis gave the eluted peaks at (Rt 13.37), which confirmed the presence of β-carotene. Furthermore, β-carotene percentage estimated by HPLC and LCMS was over 76% suggesting that these fruits and vegetable wastes may be used for the production of β-carotene with high purity and gave good antioxidant properties as determined by DPPH and ABTS.     

Long-Term Survival of Pathogenic and Sanitation Indicator Bacteria in Experimental Biowaste Composts

For economic, agricultural, and environmental reasons, composting is frequently used for organic waste recycling. One approach to limiting the potential risk from bacterial food-borne illnesses is to ensure that soil amendments and organic fertilizers are disinfected. However, more knowledge concerning the microbiological safety of composted substrates other than sludge and manure is necessary. Experimental in-vessel biowaste composts were used to study the survival of seeded Listeria monocytogenes, Salmonella enterica subsp. enterica serotype Enteritidis, and Escherichia coli. Four organic waste mixtures, containing various proportions of paper and cardboard, fruits and vegetables, and green waste, were composted in laboratory reactors with forced aeration. The physicochemical and microbiological parameters were monitored for 12 weeks during composting. The survival of bacteria over a 3-month period at 25°C was assessed with samples collected after different experimental composting times. Strain survival was also monitored in mature sterilized composts. Nonsterile composts did not support pathogen growth, but survival of seeded pathogens was observed. Salmonella serovar Enteritidis survived in all composts, and longer survival (3 months) was observed in mature composts (8 and 12 weeks of composting). Mature biowaste composts may support long-term survival of Salmonella serovar Enteritidis during storage at room temperature. E. coli and L. monocytogenes survival was observed only in 4-week-old composts and never in older composts. Proper composting may prevent long-term survival of E. coli and L. monocytogenes. These results suggest that like composted sewage sludge or manure, domestic waste composts may support pathogen survival. Survival was not related to the physicochemical characteristics of the composts.