Genetic mapping of aminoglycoside and fusidic acid resistant mutations in Bacillus subtilis

Summary Mutations governing resistance to neamine, neomycin, kanamycin and fusidic acid have been mapped within the ribosomal region of theBacillus subtilis genome using PBS1-mediated transduction. The probable order of these closely linked markers is: This work was supported by a predoctoral training grant, GM-1290, from the National Institutes of Health, administered by the Department of Microbiology, N.Y.U. School of Medicine, and by a research grant from the National Science Foundation, GB-16782, awarded to I.S.     

The pause in firing of a primary muscle spindle at the transition between dynamic and static stretch: A mathematical model

A mathematical model to offer an explanation of the pause in firing of a primary muscle spindle at the transition between dynamic and static stretch is suggested. It is proposed that the firing frequency is proportional to a generator current at the site of the transduction (presumably the five terminal endings) and that the receptor potential is a version of this current filtered by the passive cable properties of the nerve between site of transduction and site of measurement.A mathematical expression is derived for the receptor potential from data in the literature. From this and an equivalent circuit of the nerve, an expression for the generator current is derived.This work was partially supported by National Institutes of Health Training Grant, Presbyterian-St. Luke's Hospital grant-in-aid and National Science Foundation. It was done in partial fulfillment of the requirements for the degree of Doctor of Philosophy (HBN) at the University of Illinois at the Medical Center.     

A model of the peripheral auditory system

Summary Recent electrophysiological data obtained from auditory nerve fibers of cats have made possible the formulation of a model of the peripheral auditory system that relates the all-or-none activity of these fibers to acoustic stimulation. The components of the model are intended to represent the major functional components of the peripheral system. These components are: (i) a linear mechanical system intended to represent the outer, middle, and mechanical parts of the inner ear; (ii) a transducer intended to represent the action of the sensory cells; and (iii) a model neuron whose properties are intended to represent the nerve excitation process. A general-purpose digital computer has been used to determine the response of the model to a variety of acoustic stimuli. These results have been compared with data obtained from auditory nerve fibers.This work was supported in part by the Joint Services Electronics Program (Contract DA 36-039-AMC-03200(E); and in part by the National Science Foundation (Grant GP-2495), the National Institutes of Health (Grant MH-04737-05), the National Aeronautics and Space Administration (Grant NsG-496); and by Research Grant NB-01344, National Institute of Neurological Diseases and Blindness of the National Institutes of Health, Public Health Service.     

Small area estimation when auxiliary information is measured with error

Small area estimation methods typically combine direct estimatesfrom a survey with predictions from a model in order to obtainestimates of population quantities with reduced mean squarederror. When the auxiliary information used in the model is measuredwith error, using a small area estimator such as the Fay–Herriotestimator while ignoring measurement error may be worse thansimply using the direct estimator. We propose a new small areaestimator that accounts for sampling variability in the auxiliaryinformation, and derive its properties, in particular showingthat it is approximately unbiased. The estimator is appliedto predict quantities measured in the U.S. National Health andNutrition Examination Survey, with auxiliary information fromthe U.S. National Health Interview Survey.     

Identification of silent infections in SIR epidemics

A deterministic model for an SIR epidemic with silent infections is investigated. It is shown for the model studied that the extent to which silent infections are present may be determined from data concerning only those individuals with symptomatic infection. This research was supported by the National Institutes of Health through National Research Service Award GM05839.     

Reversible mechanosensitive ion pumping as a part of mechanoelectrical transduction.

To explain the ability of some mechanosensitive cells to reverse the process of mechanotransduction and to generate mechanical oscillations and emit sound, a piezo-conformational coupling model (PCC model) is proposed. The model includes a transport protein which changes either its volume (PV-coupling) or its area in the membrane (gamma A-coupling) when undergoing conformational transitions. Such a protein can interact with an oscillating pressure to pump ions and create a transmembrane gradient if the affinities of the protein for ions are different at the two sides of membrane. The frequency and concentration windows for mechanical energy transduction were determined. Under optimal conditions, the efficiency of energy transduction can approach the theoretical maximum of 100%. If the concentration gradient exceeds the static head value (quasi-equilibrium which can be built up and maintained by this transport system), the energy transduction reverses and the transporter becomes a generator of mechanical oscillations at the expense of a concentration gradient. Estimation of thermodynamic parameters of the pump shows that the PV-coupling model would require large pressure oscillations to work while the gamma A-coupling model could work in physiological conditions. The gamma A-coupling mechanism may be used by cells for two purposes. In the reverse mode, it can be a force generator for various applications. In the direct mode, it may serve bioenergetic purposes by harvesting the energy of mechanical oscillations and storing it in the form of a concentration gradient.(ABSTRACT TRUNCATED AT 250 WORDS)     

A new concept to reveal protein dynamics based on energy dissipation

Protein dynamics is essential for its function, especially for intramolecular signal transduction. In this work we propose a new concept, energy dissipation model, to systematically reveal protein dynamics upon effector binding and energy perturbation. The concept is applied to better understand the intramolecular signal transduction during allostery of enzymes. The E. coli allosteric enzyme, aspartokinase III, is used as a model system and special molecular dynamics simulations are designed and carried out. Computational results indicate that the number of residues affected by external energy perturbation (i.e. caused by a ligand binding) during the energy dissipation process shows a sigmoid pattern. Using the two-state Boltzmann equation, we define two parameters, the half response time and the dissipation rate constant, which can be used to well characterize the energy dissipation process. For the allostery of aspartokinase III, the residue response time indicates that besides the ACT2 signal transduction pathway, there is another pathway between the regulatory site and the catalytic site, which is suggested to be the β15-αK loop of ACT1. We further introduce the term "protein dynamical modules" based on the residue response time. Different from the protein structural modules which merely provide information about the structural stability of proteins, protein dynamical modules could reveal protein characteristics from the perspective of dynamics. Finally, the energy dissipation model is applied to investigate E. coli aspartokinase III mutations to better understand the desensitization of product feedback inhibition via allostery. In conclusion, the new concept proposed in this paper gives a novel holistic view of protein dynamics, a key question in biology with high impacts for both biotechnology and biomedicine.     

Baroreceptor mechanisms at the cellular level

Nothing is known of transduction mechanisms of baroreceptors in vivo. Not even the site of transduction is known. However, there are mechanotransducer ion channels that provide a useful model system of transduction. In these channels, transduction is accomplished by a strain-dependent increase in the probability of being open. Membrane tension is coupled to the channel by cytoskeletal strands that concentrate the strain energy from a large (approximately equal to 4000 A diameter) area of membrane and thereby provide high sensitivity. The channel is fast and does not inactivate, but viscoelastic coupling to the channel can dramatically alter the transfer function.     

High concentrations of visfatin in the peripheral blood of patients with acute basal ganglia hemorrhage are associated with poor outcome

Higher plasma visfatin concentration has been associated with clinical outcomes of traumatic brain injury. No published information exists to date about change in plasma visfatin after intracerebral hemorrhage. This study included one hundred and twenty-eight healthy controls and 128 patients with intracerebral hemorrhage. The unfavorable outcome was defined as modified Rankin Scale score >2 at 6 months. The patients had higher plasma visfatin measurements than control subjects. Plasma visfatin levels were highly correlated with National Institutes of Health Stroke Scale score and plasma C-reactive protein levels in the patients. A multivariate analysis identified plasma visfatin level as an independent predictor for 6-month mortality and unfavorable outcome. According to receiver operating characteristic curve analysis, the predictive value of the plasma visfatin concentration was similar to National Institutes of Health Stroke Scale score. In a combined logistic-regression model, visfatin improved the predictive value of National Institutes of Health Stroke Scale score for 6-month unfavorable outcome. Thus, increased plasma visfatin level is associated with 6-month clinical outcomes after intracerebral hemorrhage.     

Relative Risk of Involuntary Injuries Among Currently Employed Adults in the U.S.

It can be very informative to compare the risk of injury for different occupations, places where accidents happen, demographic variables, and other characteristics. However, most epidemiologic literature shows that multiple logistic regression or odds ratio were commonly used to compare the relationship between the variables on two or more levels. A multiple logistic regression could be used for multiple comparisons assuming that the model correctly reflects the situation at hand. But it might not be a true assumption. Assuming no model, we defined the relative risk to compare risks of injury for different occupations, and applied this method to the data collected by the National Center for Health Statistics (NCHS) National Health Interview Survey (NHIS). This application showed that the relative risk of injury varied by occupation and by place of accident, sex, race, and age.     

肌肉收缩Hill特性式的理论研究

从肌球蛋白工作循环的机械化学偶联模型出发,利用化学动力学方法和生物化学热力学原理,结合肌球蛋白单分子实验结果,从能量转化的观点给出了肌肉收缩的Hill特性式,加深了对Hill特性式及肌肉收缩过程中能量转化的理解,在整合肌球蛋白单分子性质与肌肉收缩宏观性质的信息方面做了尝试。     

Technology advancement for studying gene expression and gene function: a workshop report

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Technology advancement for studying gene expression and gene function: a workshop reportSponsored by National Institute of Child Health and Human Development, National Institute of General Medical Sciences, National Center for Human Genome Research, National Center for Research Resources, National Institutes of Health, Bethesda, Maryland 20892, USA     

Mouse submandibular salivary epithelial cell growth and differentiation in long-term culture: Influence of the extracellular matrix

Summary The adult mouse submandibular salivary gland provides a good model system to study gene regulation during normal and abnormal cell behavior because it synthesizes functionally distinct products ranging from growth factors and digestive enzymes to factors of relevance to homeostatic mechanisms. The present study describes the long-term growth and differentiation of submandibular salivary epithelial cells from adult male mice as a function of the culture substratum. Using a two-step partial dissociation procedure, it was possible to enrich for ductal cells of the granular convoluted tubules, the site of epidermal growth factor synthesis. Long-term cell growth over a period of 2 to 3 mo. with at least 3 serial passages was obtained only within three-dimensional collagen gels. Cells grew as ductal-type structures, many of which generated lumens with time in culture. Electron microscopic analysis in reference to the submandibular gland in vivo revealed enrichment for and maintenance of morphologic features of granular convoluted tubule cells. Reactivity with a keratin-specific monoclonal antibody established the epithelial nature of the cells that grew within collagen. Maintenance of cell differentiation, using immunoreactivity for epidermal growth factor as criterion, was determined by both cytochemical and biochemical approaches and was found to be dependent on the collagen matrix and hormones. Greater than 50% of the cells in primary collagen cultures contained epidermal growth factor only in the presence of testosterone and triiodothyronine. In contrast, cells initially seeded on plastic or cycled to plastic from collagen gels were virtually negative for epidermal growth factor. Biochemical analysis confirmed the presence of a protein with an apparent molecular weight of 6000 which comigrated with purified mouse epidermal growth factor. Epidermal growth factor was also present in detectable levels in Passage 1 cells. This culture system should permit assessment of whether modulation of submandibular gland ductal cell growth can be exerted via a mechanism that in itself includes epidermal growth factor and its receptor and signal transduction pathway. This work was supported by Public Health Service grant DE07766 from the National Institute of Dental Research, National Institutes of Health, Bethesda, MD.     

On the efficiency and reversibility of active ligand transport induced by alternating rectangular electric pulses.

The stationary-state kinetic properties of a simplified two-state electro-conformational coupling model (ECC) in the presence of alternating rectangular electric potential pulses are derived analytically. Analytic expressions for the transport flux, the rate of electric energy dissipation, and the efficiency of the transducing system are obtained as a function of the amplitude and frequency of the oscillation. These formulas clarify some fundamental concept of the ECC model and are directly applicable to the interpretation and design of experiments. Based on these formulas, the reversibility and the degree of coupling of the system can be studied quantitatively. It is found that the oscillation-induced free energy transduction is reversible and tight-coupled only when the amplitude of the oscillating electric field is infinitely large. In general, the coupling is not tight when the amplitude of the electric field is finite. Furthermore, depending on the kinetic parameters of the model, there may exist a "critical" electric field amplitude, below which free energy transduction is not reversible. That is, energy may be transduced from the electric to the chemical, but not from the chemical to the electric.     

The effects of asymptomatic attacks on the spread of infectious disease: A deterministic model

A deterministic model for a multi-agent disease epidemic with asymptomatic attacks is proposed and investigated. The limitations inherent in the assumptions of the model are discussed in connection with specific agents of disease. The mathematical treatment of the model is separated into analyses of the equilibrium situation and the transient behavior of the disease outbreak. Explicit formulas are derived for the number of susceptibles in the population as well as for the numbers of each type of infective—those with and without symptoms. These theoretical results are followed by a discussion of the practical considerations which must be taken into account to obtain useful information from the model. This work was supported in part by National Library of Medicine Training Grant Number 5 T01 LM00160 and in part by National Institutes of Health National Research Service Award Number 1 F32 GMO 5839 from the Institute of General Medical Sciences.     

Alpha-1, alpha-2, and beta adrenergic signal transduction in cultured uterine myocytes

Summary The following studies were undertaken to develop a cultured uterine myocyte model which would allow further clarification of the adrenergic signal transduction mechanisms utilized by these myocytes. After mechanical removal of the endometrium, rabbit uterine myoctes were isolated by an overnight enzymatic disaggregation using collagenase and DNase I. The isolated myocytes were maintained in culture in 75-cm² flasks containing Waymouth's MB 751/1 medium-10% fetal bovine serum along with 10⁻⁸ M estradiol, penicillin, streptomycin, and Fungizone. The phase contrast and electron micrographic appearance of these cells was consistent with that previously reported for smooth muscle myocytes in culture. Immunocytochemical studies utilizing monoclonal anti-alpha-smooth muscle actin antibodies confirmed the presence of smooth muscle actin in these cultured myocytes. Western blot studies similarly confirmed the presence of alpha-smooth muscle actin in rabbit myometrial tissue and the cultured myocytes, both the primary and F1 generation. After prelabeling the myocytes with [³H]inositol, adrenergic stimulation experiments demonstrated alpha-1 receptor mediated stimulation of inositol phosphates. Beta receptor stimulation experiments confirmed cAMP production in these cultured myocytes, and the ability of clonidine, an alpha-2 agonist, to inhibit forskolin stimulated cAMP production confirmed the presence of functional alpha-2 adrenergic receptors in these myocytes. In conclusion, these cultured rabbit uterine myocytes have provided an in vitro model which can be utilized to further clarify the adrenergic receptor signal transduction mechanisms in genital tract smooth muscle. This research was supported by grant HD-22063 from the National Institutes of Health, Bethesda, MD.     

Genetic analysis of lon mutants of strain K-12 of Escherichia coli

Summary Following UV irradiation of AB1157 31 mucoid ultraviolet light UV sensitive mutants were isolated. These were all induced to form filaments by UV irradiation, i.e. they had all the phenotypic properties of Lon mutants. These lon mutants fell into two phenotypic classes based on their sensitivity to UV. The gene determining UV sensitivity and mucoidy in all mutants of both Class A and Class B was cotransducible with proC. Intra-class crosses by Pl transduction yielded no UV resistant recombinants. Inter-class crosses yielded UV resistant nonmucoid recombinants, the frequency depending on the direction of the cross. The data imply two adjacent blocks in the lon region of E. coli and the order of markers in this region is probably proC tsx lon Class A lon purE Class B.This work was carried out under Public Health Service Grant CA 05687-08 from the National Cancer Institute.Recipient of a Public Health Service Career Development Award.     

Growth of a water strain ofLeptospira in synthetic media

Pertinent parameters of growth of a water strain ofLeptospira in synthetic media are described. Growth rates as a function of aeration, temperature, and substrate concentration were determined. Evidence is presented for the production of acetate and CO₂ from long-chain fatty acids. A marked drop in pH was shown to result from the accumulation of acetate during growth in synthetic medium. Growth was initiated at pH values from 5.2 to 7.7. An absolute CO₂ requirement for initiation of growth was demonstrated. Growth is also described with acetate as the sole carbon and energy source, demonstrating that leptospires are capable of fatty acid synthesis.This investigation was supported by Public Health Service grant AI-05440 from the National Institute of Allergy and Infectious Diseases, and by Public Health Service predoctoral fellowship (1-Fl-GM-40, 062-01) to the senior author from the National Institute of General Medical Sciences. Technical assistance of Mr. Howard Young is gratefully acknowledged.     

TonB and the Gram-negative dilemma

TonB protein serves as an energy transducer to couple cytoplasmic membrane energy to high-affinity active transport of iron siderophores and vitamin B₁₂ across the outer membranes of Gram-negative bacteria. The biochemical mechanism of the energy transduction remains to be determined, but important details are already known. TonB is targeted to and anchored in the cytoplasmic membrane by a single membrane-spanning domain and spans the periplasm to physically interact with outer-membrane receptors of the transport ligands. TonB-dependent energy transduction is modulated by ExbB protein, which stabilizes TonB, and possibly by several other proteins including ExbC, ExbD, and TolQ. TonB has a relatively short functional half-life that is accelerated when rates of active transport across the outer membrane are increased. A model that incorporates this information, as well as some tempered speculation, is presented.     

Control of proliferation in two cell linesin vitro

Summary In two types of cells growing as monolayer cultures (an established line of Chinese hamster cells and a newly obtained strain of Rat Fibroblasts) no evidence is found for proliferation control by contact inhibition of mitosis or by cell-produced chemical inhibitors. Under the particular conditions of these experiments, the intracellular concentration of a multiplication-stimulating factor (MSF) associated with fetal calf serum appears to play a regulating role. This factor is degraded continually by proliferating as well as by non-proliferating, plateau phase cells. A model is proposed in which the intracellular concentration of MSF is governed by: the amount of MSF available to the cell from the culture medium; the permeability and amount of cell membrane accessible for diffusion (or transport) of MSF; and the rate of its degradation. It is hypothesized that mitosis only occurs if the concentration of MSF exceeds a critical value and that this critical value is a characteristic of the cell type. Consistency of the model with existing data concerningin vitro cell proliferation is discussed.This work was supported by Grants CA-04542 and CA-10372 from the National Cancer Institute, National Institutes of Health, U.S. Public Health Service.Biophysics trainee under United States Public Health Service Training Grant GM-00712 from the National Institutes of Health.Holder of a Dernham Senior Fellowship in Oncology from the American Cancer Society, California Division.