Some properties of a previously undescribed virus from cassava: Cassava American Latent Virus

A virus with spherical particles c. 28 nm in diameter was sap-transmitted from different cassava (Manihot esculenta) cultivars to a limited range of species in the families Chenopodiaceae and Solanaceae. Cassava seedlings infected by inoculation with sap or with purified virus preparations did not show any symptom, although the virus was readily detected by ELISA or by further inoculations. Leaf extracts from infected Nicotiana benthamiana were infective after dilution of 10^--³but not 10^--⁴, and after heating for 10 min at 70°C, but not at 72°C. The virus was purified from N. benthamiana, N. clevelandii or from cassava. On sucrose gradients, the virus particles sediment as three components all containing a protein of mol. wt c. 57000. The genome of the virus is composed of two RNAs of mol. wt c. 2.54 times 10⁶(RNA-1) and 1.44 times 10⁶(RNA-2). RNA-2 was detected in the middle and the bottom nucleoprotein components, and RNA-1 only in the bottom component. An antiserum prepared to purified virus particles was used to readily detect the virus in cassava and other host plants by ELISA and by ISEM. No serological relationship was shown between this virus and eight nepoviruses, including the recently described cassava green mottle nepovirus infecting cassava in the Solomon Islands (Lennon, Aiton & Harrison, 1987). The virus described here is the first nepovirus isolated from cassava in South America, and is named cassava American latent virus.     

Host range and properties of potato black ringspot virus

Potato black ringspot virus (PBRV), obtained from cultivated potato in Peru, was found to have a very wide host range resembling that of tobacco ringspot virus (TRSV-B), to which PBRV is distantly related serologically. However, PBRV caused the more severe symptoms in many species and, unlike TRSV B, infected Lycopersicon esculentum and Cyamopsis tetragonoloba. In Solanum tuberosum, PBRV caused necrotic spots and ringspots in systemically infected leaves in the year of infection and was readily transmitted through tubers to progeny plants, most of which developed no obvious symptoms although systemically infected. TRSV-B infected non-inoculated S. tuberosum leaves only sporadically, did not induce symptoms in them and was not transmitted through tubers to progeny plants. PBRV was cultured in Nicotiana clevelandii and infectivity was assayed in Cheno-podium amaranticolor or C. quinoa. Virus particles were purified from leaf extracts, after clarification using chloroform, by precipitation with 6% polyethylene glycol and differential centrifugation. Purified preparations contained 25 nm diameter isometric particles with somewhat angular outlines, sedimenting as three components (T, M and B) at 49, 84 and 117 S, and containing a single protein species of mol. wt 59 000. Preparations of PBRV nucleic acid contained two species, estimated by polyacrylamide gel electrophoresis in non-denaturing conditions to have mol. wt of about 25 10⁶ (RNA-1) and 15 10⁶ (RNA-2). Infectivity was associated with B particles, preparations of which contained RNA-1 and RNA-2, presumably in different particles. M particles contained RNA-2, were not infective and enhanced infectivity only slightly when added to B particles. Similar relative amounts of RNA-1 and RNA-2 were extracted from unfractionated virus using phenol or Pronase, but preparations obtained using phenol were much the more infective. PBRV has properties typical of nepoviruses; its present cryptogram is (R/1):2–5/41 + 15/28 or 2 1 5/46:S/S:S/*, nepovirus group.     

Production and use of cDNA clones from arabis mosaic virus

Arabis mosaic virus (AMV) genomic RNAs were converted to dsDNA and cloned into bacterial plasmids. Insert sizes of cDNA clones ranged from 0·2 to 3·2 kbp. Restriction enzyme mapping identified clones representing at least 90% of the RNA-2 genome. A 0·9 kbp clone specific to RNA-1 was also identified. Northern blot hybridisations of AMV RNAs with clones from either RNA-1 or RNA-2 showed no cross reactions. The sensitivity of virus detection in dot hybridisation was 15 pg of purified genomic RNA and 40 pg of purified virus particles. The possibility of using cDNA clones for the detection of AMV in strawberry sap was demonstrated. Two AMV dsRNAs corresponding to genomic RNAs in size were isolated from infected cucumber plants and reacted in hybridisation experiments.     

Properties of a tomato isolate of Pelargonium zonate spot virus

A manually transmissible virus isolated from tomato plants with stunting, unfruitfulness, malformation and yellow rings and line patterns of the leaves was indistinguishable from Pelargonium zonate spot virus (PZSV) in biological, physico-chemical and serological properties. The tomato isolate (PZSV-T) of PZSV was seed transmitted in Nicotiana glutinosa and was detected in the pollen of this host. In sap of N. glutinosa PZSV-T lost infectivity after diluting 10^-1 to 10^-2, heating for 10 min at 35 to 40 °C or storage at 25 °C for 7 h. Virus particles were quasi-spherical with a diameter ranging between 25 and 35 nm with a modal value of 29 nm. Particles sedimented as three components (TV, MV and BV) with sedimentation coefficients of 80S (TV), 90S (MV) and 118S (BV); component BV is probably an aggregate of TV. Particles were unstable in CsCl and CS₂SO₄ but formaldehyde-stabilised particles banded at a common density of 1–268 g/cm³ in Cs₂SO₄. Particles contained a single protein species with mol. wt of c. 23000 and c. 18% single stranded RNA present as two species with mol. wts of c. 1.25 × 10⁶ (RNA-1) and 0.95 × 10⁶ (RNA-2). Mixtures of RNA-1 + RNA-2 were infectious and this infectivity was not enhanced by the addition of coat protein. Virus particles had a Tf (mid point of extinction when heated) of 63 °C and were readily dissociated by 0.1% SDS. PZSV-T was serologically unrelated to alfalfa mosaic and to 32 isometric viruses including five ilarviruses. Some properties of PZSV resemble those of ilarviruses but others are sufficiently different to suggest that it may not be a member of this virus group.     

The relationship of potato black ringspot virus to tobacco ringspot and allied viruses

The relationship between potato black ringspot virus (PBRV), isolates of tobacco ringspot virus from blueberry (TRSV-B), cherry (TRSV-C) and calico-diseased potato (TRSV-P), and eucharis mottle virus (EuMV) was examined in tests of three types. In gel-diffusion precipitin tests, the reaction end-points of antisera, and spur formation, indicated that PBRV and TRSV-P are very closely related but not identical antigenically, as are TRSV-B and TRSV-C, and that these two pairs are more distantly related to each other and to EuMV. In plant-protection tests in Nicotiana angustifolia, PBRV, TRSV-B and EuMV conferred protection against the homologous virus but not against one another. PBRV, but not TRSV-B, conferred protection against TRSV-P. In tests with the two RNA species of PBRV, infectivity increased greatly when preparations of RNA-1 and RNA-2 were mixed, and both species are probably needed for infection. Infectivity did not increase when RNA-1 or RNA-2 of PBRV was mixed with RNA-2 or RNA-1, respectively, of TRSV-B; the two viruses seem too distantly related to form pseudo-recombinants. It is concluded that PBRV and tobacco ringspot virus should be considered separate viruses, and that TRSV-P should be considered a strain of PBRV. EuMV should perhaps be recognised as a virus distinct from, but related to, PBRV and tobacco ringspot virus.     

Effects of virus genotype and temperature on seed transmission of nepoviruses

Transmission of different nepoviruses through chickweed (Stellaria media) seed was differently affected by ambient temperature during seed production. Raspberry ringspot and tomato black ring (Scottish isolate) viruses were similarly and frequently transmitted at 14 , 18 and 22 ^oC, whereas arabis mosaic virus was transmitted most frequently at 14 ^oC, and strawberry latent ringspot and tomato black ring (German isolate) viruses at 22 ^oC. When infected by seed-borne nepoviruses, seedlings of S. media and other species were symptomless at 15–25 ^oC, and the viruses were therefore detected by inoculating sap to Chenopodium quinoa indicator plants. However, typical symptoms of arabis mosaic and tomato black ring viruses were induced by growing Nicotiana tabacum, N. clevelandii and C. quinoa seedlings infected with seed-borne virus at 33–37 ^oC during the third and fourth weeks after sowing, preceded and followed by periods at 15–25 ^oC. The proportion of N. tabacum seedlings developing symptoms was the same as that of untreated seedlings yielding sap-transmissible virus. Seed transmissibility of pseudo-recombinant isolates of raspberry ringspot and tomato black ring viruses, containing RNA-i from one virus strain and RNA-2 from another strain, depended greatly on the transmissibility of the strain contributing RNA-i. The source of RNA-2 had an additional but smaller influence. The satellite RNA (RNA-3) of tomato black ring virus was seed-transmitted in S. media and its occurrence in cultures did not affect the frequency of transmission of the virus. Results of testing the infectivity of extracts of seed from infected mother plants suggested that failure of seed transmission reflected failure to become established in the seed, not subsequent inactivation. Whereas seed transmissibility of raspberry ringspot virus is primarily dependent on information carried in RNA-i, transmissibility by nematode vectors, another property of major ecological importance, is determined by RNA-2. In the field, selection pressures presumably can act independently on the two parts of the genome but evidence was also obtained of selection for mutual compatibility of RNA-i and RNA-2.     

Hydrangea mosaic virus, a new ilarvirus from Hydrangea macrophylla (Saxifragaceae)

A previously unrecognised virus isolated from Hydrangea macrophylla with chlorotic mosaic leaf symptoms in West Sussex was named hydrangea mosaic virus (HydMV). HydMV was mechanically transmitted without difficulty to four of 16 species from three of five families, and was seed transmitted in Chenopodium quinoa, but was not aphid transmitted. Although relatively unstable in vitro, HydMV was purified by clarifying leaf extracts by emulsification with chloroform and acidification with citric acid, followed by differential centrifugation and sucrose density gradient centrifugation. Purified virus incompletely separated on sucrose density gradients into three components (T. M and B) with sedimentation coefficients (s^o_20w) of 86, 97, and 105 S respectively, but all particles had buoyant densities in caesium chloride of 1.37 g/cm³. Virus contained a single polypeptide species (mol. wt 26.4 times 10³), appeared quasiisometric to ovoid or elliptical, and measured c. 28 times 30 (T), 30 times 30 (M) or 30 times 32–38 nm (B). Single-stranded RNA species or mol. wt 1–25, 1–08, 0–83, 0–36 and 0–27 (RNA-1 to 5 respectively) were obtained from virus preparations but mixtures containing RNA-1 to 3 plus either RNA-4 + 5 or the coat protein, were infective. These properties suggest that HydMV has affinities with ilarviruses, but it showed no serological relationship to any of six ilarviruses or 42 other viruses.     

Plant defense responses induced by Bemisia tabaci Middle East—Asia Minor 1 salivary components

The in vivo effects of Bemisia tabaci (Gennadius) (Hemiptera: Aleyrodidae) Middle East—Asia Minor 1 (MEAM1) saliva on the induced defense of tomato plants were examined. After infiltration of MEAM1 saliva into tomato leaves, qPCR analysis indicated strong local induction of salicylic acid (SA)‐responsive genes — salicylic acid induction deficient 2 (SID2) and β‐1,3‐glucanase (BGL2)— whereas pathogenesis‐related protein‐1 (PR1) showed strong induction both locally and systemically. The jasmonic acid (JA)‐responsive genes — omega‐3 fatty acid desaturase 3 (FAD3), lipoxygenase (LOX), and proteinase inhibitor II (PI‐II) — indicated moderate induction both locally and systemically. The activities of peroxidases and catalase were also induced both locally and systemically, whereas polyphenol oxidase and lipoxygenase were either transiently induced or unchanged. When either MEAM1 or AsiaII_3 whitefly adults were given access to leaves 2 h after saliva infiltration, the number of F1 progeny on the leaves on which the infiltration took place was significantly reduced for both. In contrast, when either MEAM1 or AsiaII_3 adults were given access to leaves 1 day after infiltration, the number of AsiaII_3 progeny was significantly reduced, whereas the number of MEAM1 progeny remained the same as the control. After 2 days, there was no significant difference for the infiltrated leaves for either species. In contrast, 2 h, 1 day, and 2 days after saliva infiltration, the number of F1 MEAM1 progeny on leaves where infiltration did not take place was the same as the controls, whereas the number of AsiaII_3 progeny was significantly reduced. Furthermore, the percentage of MEAM1 adults on leaves with high PR1 and BGL2 RNAs was significantly higher than the percentage of AsiaII_3 adults. Altogether, infiltration of MEAM1 saliva caused intense local defense, as well as moderate, but more persistent systemic defense. Both the SA and JA signaling pathways were regulated by MEAM1 salivary components, and were associated with asymmetric plant defense that favored MEAM1 over AsiaII_3.     

Extensive host range of an endophytic fungus, <Emphasis Type="Italic">Guignardia endophyllicola</Emphasis> (anamorph: <Emphasis Type="Italic">Phyllosticta capitalensis</Emphasis>)

Isolation of endophytic species of Guignardia (anamorph: Phyllosticta) from healthy leaves of 94 plants (91 species and 3 varieties) in 69 genera, 42 families, was carried out in a test site (Kyoto Herbal Garden) to investigate the host range of Guignardia endophyllicola (anamorph: Phyllosticta capitalensis). Species of Guignardia and Phyllosticta were isolated from the leaves of 67 plants (66 species and 1 variety) belonging to 54 genera, 38 families. Among them, 53 isolates from different plants belonging to 43 genera in 36 families were similar in morphology, and sequence analysis of internal transcribed spacer (ITS) regions of ribosome DNA revealed these isolates to be conspecific with G. endophyllicola. In addition, this fungus was isolated from leaves of various plants collected in different places in Japan and Thailand. Thus, this endophytic fungus has been revealed to live within various vascular plants, angiosperms, gymnosperms, and pteridophytes.     

Properties of Scottish isolates of cocksfoot mild mosaic virus and their comparison with others

Two isolates of cocksfoot mild mosaic virus obtained from cocksfoot (Dactylis glomerata) in Scotland differed in symptomatology, and apparently in host range, from isolates obtained in Germany and Wales. They were serologically more closely related to a Dutch isolate from cocksfoot, and to a Scottish isolate from timothy (Phleum pratense), than was the German isolate from cocksfoot. The Scottish isolate from timothy was somewhat more virulent than, but serologically closely related to a Welsh isolate from timothy. Particles of Scottish isolates from cocksfoot and timothy were best preserved for electron microscopy by fixation with osmium tetroxide. In 1.0 m KCl or 0.01 m ethylene diamine tetraacetate they were stable at pH 5.2–5.3 but unstable above pH 7; they were disrupted by 0.5% sodium dodecyl sulphate. The particles contained major and minor RNA components of mol. wt c. 1.5. 10⁶(RNA-1) and 0.5. 10⁶(RNA-2) respectively, together with polydisperse RNA of intermediate mol. wt and protein of mol. wt c. 27 000. In CsCl gradients, major and minor nucleoprotein components of density 1.39 and 1.38 g/ml respectively were distinguished. The less dense particles contained a larger proportion of intermediate-sized RNA molecules and of RNA- 2 , and a smaller proportion of RNA- 1 , than did the denser particles. Particles seem to contain either RNA-1 or various combinations of smaller RNA molecules. Despite the differences in antigenic constitution, symptomatology and particle stability between virus isolates obtained from cocksfoot and timothy in different countries, these isolates seem sufficiently similar to be considered one virus.     

Differential expression of photosynthesis genes in leaf tissue layers of Peperomia as revealed by tissue printing

Peperomia has species that may be C₃, show Crassulacean acid metabolism (CAM), or CAM-cycling. Species that show CAM progress from C₃ to CAM through CAM-cycling during leaf development. In CAM and CAM-cycling species, CAM metabolism is predominately in the upper multiple epidermis and lower spongy mesophyll, whereas C₃ metabolism is localized mostly in the palisade mesophyll. Using specific protein and cDNA probes prepared from P-enolpyruvate carboxylase (PEPc) and ribulose-1,5-bisphosphate carboxylase (Rubisco), we have now studied the differential distribution of photosynthetic metabolism in Peperomia leaves using the technique of tissue printing. The tissue printing studies detected Rubisco protein in leaves of C₃ P. orba, but not PEPc. Young C₃ leaves of P. scandens and P. camptotricha showed Rubisco protein, but not PEPc; however, the mature leaves of these two species that have CAM showed PEPc protein and RNAs in both the multiple epidermis and spongy mesophyll. In contrast, Rubisco protein and RNAs were present throughout the leaf. The tissue printing data are consistent with our previously published data showing the differential distribution of photosynthetic metabolism in leaves of Peperomia. Although the tissue printing technique is qualitative, coupled with quantitative data it has proven useful for the study of function related to structure.     

Contributions of the brome mosaic virus RNA-3 3'-nontranslated region to replication and translation.

Sequences upstream of the 3'-terminal tRNA-like structure of brome mosaic virus RNAs have been predicted to fold into several stem-loop and pseudoknot structures. To elucidate the functional role of this upstream region, a series of deletions was made in cDNA clones of RNA-3, a genomic component not required for replication. These deletion mutants were transcribed in vitro and cotransfected with RNA-1 and RNA-2 into barley protoplasts. Deletion of single stem-loop structures gave progeny retaining near-wild-type accumulation levels. Constructions representing deletion of two or three stem-loops substantially lowered the accumulation of progeny RNA-3 relative to wild-type levels. RNA-3 mutants bearing deletions of longer sequences or of the entire region (delta PsKs RNA-3) replicated poorly, yielding no detectable RNA-3 or RNA-4 progeny. Levels of RNA-1 and RNA-2, in the presence of a mutant RNA-3, were found to increase relative to the accumulation observed in a complete wild-type transfection. The stability of delta PsKs RNA-3 in protoplasts was somewhat lower than that of wild-type RNA during the first 3 h postinoculation. Little difference in translatability in vitro of wild-type and RNA-3 constructs bearing deletions within the stem-loop region was observed, and Western immunoblot analysis of viral coat protein produced in transfected protoplasts showed that protein accumulation paralleled the amount of RNA-4 message produced from the various sequences evaluated. These results indicate that the RNA-3 pseudoknot region plays a minor role in translational control but contributes substantially to the overall replication of the brome mosaic virus genome.     

Genomic distribution of retrotransposons 297, 1731, copia, mdg1 and roo in the Drosophila melanogaster species subgroup

The intragenomic distribution of five retrotransposon families (297, 1731, copia, mdg1 and roo) in the species of the melanogaster complex was studied by comparing results of the Southern blotting technique in males and females with those of in situ hybridization. The degree of structural polymorphism of each family in the different species was also investigated by restriction enzyme analysis. It was found that genomic distribution is a trait that depends on the family and species. The distribution of roo is mainly euchromatic in the four species and 1731 is heterochromatic, but the distribution of families 297, copia and mdg1 is markedly different in the melanogaster and simulans clades. These families were mainly euchromatic in D. melanogaster but heterochromatic in its sibling species. In the simulans clade most copia and mdg1 elements are located on chromosome Y. Differences in genomic distribution are unrelated with structural conservation. The relation of intragenomic distribution to phylogeny, transpositional activity and the role of the host genome are discussed.     

Two key arginine residues in the coat protein of Bamboo mosaic virus differentially affect the accumulation of viral genomic and subgenomic RNAs

The interactions between viral RNAs and coat proteins (CPs) are critical for the efficient completion of infection cycles of RNA viruses. However, the specificity of the interactions between CPs and genomic or subgenomic RNAs remains poorly understood. In this study, Bamboo mosaic virus (BaMV) was used to analyse such interactions. Using reversible formaldehyde cross‐linking and mass spectrometry, two regions in CP, each containing a basic amino acid (R99 and R227, respectively), were identified to bind directly to the 5′ untranslated region of BaMV genomic RNA. Analyses of the alanine mutations of R99 and R227 revealed that the secondary structures of CP were not affected significantly, whereas the accumulation of BaMV genomic, but not subgenomic, RNA was severely decreased at 24 h post‐inoculation in the inoculated protoplasts. In the absence of CP, the accumulation levels of genomic and subgenomic RNAs were decreased to 1.1%–1.5% and 33%–40% of that of the wild‐type (wt), respectively, in inoculated leaves at 5 days post‐inoculation (dpi). In contrast, in the presence of mutant CPs, the genomic RNAs remained about 1% of that of wt, whereas the subgenomic RNAs accumulated to at least 87%, suggesting that CP might increase the accumulation of subgenomic RNAs. The mutations also restricted viral movement and virion formation in Nicotiana benthamiana leaves at 5 dpi. These results demonstrate that R99 and R227 of CP play crucial roles in the accumulation, movement and virion formation of BaMV RNAs, and indicate that genomic and subgenomic RNAs interact differently with BaMV CP.     

Pepino mosaic virus, a new potexvirus from pepino (Solanum muricatum)

Pepino mosaic virus (PepMV), a previously undescribed virus, was found in fields of pepino (Solanum muricatum) in the Canete valley in coastal Peru. PepMV was transmitted by inoculation of sap to 32 species from three families out of 47 species from nine families tested. It caused a yellow mosaic in young leaves of pepino and either a mild mosaic or symptomless infection in 12 wild potato species, five potato cultivars and potato clone USDA 41956 but S. stoloniferum and potato cultivars Merpata and Revolucion reacted with severe systemic necrotic symptoms. The virus was transmitted by plant contact but not by Myzus persicae. It was best propagated and assayed in Nicotiana glutinosa. Sap from infected N. glutinosa was infective after dilution to 10^-1 but not 10^-6, after 10 min at 65°C but not 70°C and after 3 months at 20°C. PepMV had filamentous particles with a normal length of 508 nm; the ends of some seemed damaged. Ultra-thin sections of infected leaves of N. glutinosa revealed many inclusions containing arrays of virus-like particles some of which were banded or whorled; small aggregates of virus-like particles were also common. The virus was purified by extracting sap from infected leaves in a solution containing 0·065 M disodium tetraborate, 0·435 M boric acid, 0·2% ascorbic acid and 0·2% sodium sulphite at pH 7·8, adding silver nitrate solution to the extract, and precipitating the virus with polyethylene glycol followed by two cycles of differential centrifugation. Particles of PepMV normally yielded two proteins with molecular weights of 26 600 and 23 200, but virus obtained from infective sap aged overnight yielded only the smaller protein suggesting that it was a product of degradation of the larger one. The virus is serologically related to two potexviruses, narcissus mosaic and cactus X and its properties are typical of the potexvirus group.     

Attractiveness and exploitation of decaying herbage by Drosophila in temperate woodland

Summary The Drosophila fauna of a deciduous flood plain forest rich in undergrowth near the river Isar, close to Munich, Germany, was surveyed in summer 1990. Decaying herbage baits (decay artificially induced) were set out to study the exploitation of that resource by Drosophila. Sixteen plant species belonging to several families dominant in the collecting area were tested. All attracted and produced drosophilid flies. Ten Drosophila species utilized decaying plant material as breeding sites; at least eight of the ten are polyphagous. Decaying stalks and leaves of Angelica sylvestris (Apiaceae) were examined in detail. In the case of the most frequent species of Drosophila attracted to A. sylvestris, the number of adults collected did not correlate with the number of flies emerging from the substrate. This was particularly true of D. limbata and D. phalerata. When oviposition and larval development of D. limbata and D. phalerata on A. sylvestris was tested in the laboratory, the number of offspring per female was the same in both species. The difference between these two species of the quinaria group in the exploitation of A. sylvestris in the field is therefore not due to differential suitability of the substrate.     

Binding between elongation factor 1A and the 3ʹ-UTR of Chinese wheat mosaic virus is crucial for virus infection

The Chinese wheat mosaic virus (CWMV) genome consists of two positive-strand RNAs that are required for CWMV replication and translation. The eukaryotic translation elongation factor (eEF1A) is crucial for the elongation of protein translation in eukaryotes. Here, we show that silencing eEF1A expression in Nicotiana benthamiana plants by performing virus-induced gene silencing can greatly reduce the accumulation of CWMV genomic RNAs, whereas overexpression of eEF1A in plants increases the accumulation of CWMV genomic RNAs. In vivo and in vitro assays showed that eEF1A does not interact with CWMV RNA-dependent RNA polymerase. Electrophoretic mobility shift assays revealed that eEF1A can specifically bind to the 3ʹ-untranslated region (UTR) of CWMV genomic RNAs. By performing mutational analyses, we determined that the conserved region in the 3ʹ-UTR of CWMV genomic RNAs is necessary for CWMV replication and translation, and that the sixth stem-loop (SL-6) in the 3ʹ-UTR of CWMV genomic RNAs plays a key role in CWMV infection. We conclude that eEF1A is an essential host factor for CWMV infection. This finding should help us to develop new strategies for managing CWMV infections in host plants.