A novel field method to distinguish between cryptic carcharhinid sharks,Australian blacktip shark Carcharhinus tilstoni and common blacktip shark C. limbatus,despite the presence of hybrids

Multivariate and machine‐learning methods were used to develop field identification techniques for two species of cryptic blacktip shark. From 112 specimens, precaudal vertebrae (PCV) counts and molecular analysis identified 95 Australian blacktip sharks Carcharhinus tilstoni and 17 common blacktip sharks Carcharhinus limbatus. Molecular analysis also revealed 27 of the 112 were C. tilstoni × C. limbatus hybrids, of which 23 had C. tilstoni PCV counts and four had C. limbatus PCV counts. In the absence of further information about hybrid phenotypes, hybrids were assigned as either C. limbatus or C. tilstoni based on PCV counts. Discriminant analysis achieved 80% successful identification, but machine‐learning models were better, achieving 100% successful identification, using six key measurements (fork length, caudal‐fin peduncle height, interdorsal space, second dorsal‐fin height, pelvic‐fin length and pelvic‐fin midpoint to first dorsal‐fin insertion). Furthermore, pelvic‐fin markings could be used for identification: C. limbatus has a distinct black mark >3% of the total pelvic‐fin area, while C. tilstoni has markings with diffuse edges, or has smaller or no markings. Machine learning and pelvic‐fin marking identification methods were field tested achieving 87 and 90% successful identification, respectively. With further refinement, the techniques developed here will form an important part of a multi‐faceted approach to identification of C. tilstoni and C. limbatus and have a clear management and conservation application to these commercially important sharks. The methods developed here are broadly applicable and can be used to resolve species identities in many fisheries where cryptic species exist.     

Adult blacktip sharks (Carcharhinus limbatus) use shallow water as a refuge from great hammerheads (Sphyrna mokarran)

A refuge can be any space that keeps an organism safe from danger. Prey usually seek protection in the closest refuge available to minimize cost while maximizing survival. Aerial drone footage of blacktip sharks, Carcharhinus limbatus, along the coast of southeast Florida, USA, shows adult blacktips fleeing to the shallow water adjacent to the beach when confronted with or chased by a predatory great hammerhead shark, Sphyrna mokarran. To authors’ knowledge, this is the first evidence of adult C. limbatus using shallow waters as a refuge.     

Morphometric relationships for some species of elasmobranch from tropical eastern Pacific

This study proposes length relationship equations to determine total length of four species of sharks (Carcharhinus falciformis, Mustelus lunulatus, Sphyrna lewini and Carcharhinus limbatus) based on trunk lengths (TrL) and interdorsal lengths (IL) caught in Colombia and Central America Pacific Ocean. In Central American Pacific, data were recorded for C. falciformis, C. limbatus and S. lewini between 2006 and 2012. In the Colombian Pacific, data was recorded in 1994–1995 and from 2006 to 2012 for C. falciformis, S. lewini and M. lunulatus. In the Central American Pacific the IL – TL relationship was acceptable for C. falciformis (r² = .69) and C. limbatus which presented a good relationship (r² = .81) where most specimens were juveniles; the same trend was found for S. lewini (r² = .96). The TL‐TrL relationship estimated for species caught in the Colombian Pacific was significant for C. falciformis (r² = .98) and for M. lunulatus (r² = .84); however, for S. lewini this relationship was low (r² = .55). Results indicate this is a useful tool for fishery statistics and fishery management for elasmobranch species of the Eastern Tropical Pacific.     

Feeding ecology and trophic comparisons of six shark species in a coastal ecosystem off southern Brazil

The diets of six shark species, Sphyrna lewini, Sphyrna zygaena, Carcharhinus obscurus, Carcharhinus limbatus, Rhizoprionodon lalandii and Galeocerdo cuvier, were investigated in a subtropical coastal ecosystem of southern Brazil. Stomach content data were obtained to assess foraging niche segregation and ontogenetic shifts in the diets of these sharks. Five of the shark species off the Paraná coast were ichthyophagous, with the exception of S. zygaena, which was teutophagous. With the exception of G. cuvier, which had a generalist diet, the other five species displayed specialization in their feeding. Ontogenetic shifts were observed in C. obscurus and S. lewini with large individuals consuming elasmobranchs. Owing to the diet overlap between C. obscurus and S. lewini, C. obscurus and C. limbatus and R. lalandii and C. limbatus, future studies on the spatial and temporal distributions of these species are needed to understand the extent of competitive interactions.     

Metabolic rates and the energetic cost of external tag attachment in juvenile blacktip sharks Carcharhinus limbatus

This study reports on the metabolic rate of the blacktip shark Carcharhinus limbatus and the energetic costs of external tag attachment. Metabolic rates, swimming speed and tail‐beat (B_T) frequency were measured in a static respirometer with untagged animals and animals equipped with a small data logger. Tagged sharks showed significantly higher routine oxygen consumption and lower swimming speeds than untagged animals, indicating that tagging significantly affected the swimming efficiency and energetic requirements in these small sharks, and that these effects must be accounted for when interpreting telemetry data from free‐ranging individuals.     

Sperm storage in male elasmobranchs: A description and survey

Two basic types of spermatozoan aggregates, spermatophores and spermatozeugmata, found in 14 different species of sharks, one species of skate, and one species of chimaera (holocephalan), were investigated using light and scanning electron microscopy. Spermatophores, aggregates (usually 1,000–6,000 μm in diameter and larger) of randomly clumped sperm embedded in and surrounded by an eosinophilic matrix, were found in Alopias superciliosus, Odontaspis taurus, Carcharodon carcharias, Isurus oxyrinchus, and Lamna nasus. Three types of spermatozeugmata, sperm structures without a surrounding capsule or matrix, are described. The first, clumps of 60–200 sperm unbound in a supporting matrix, are found in Squalus acanthias and Hydrolagus colliei. In the second type, single-layered spheres are formed of sperm clumps with the sperm heads bound in a common supporting matrix. These are found in Carcharhinus limbatus and Carcharhinus plumbeus. The third type of spermatozeugmata are large multilayered, compound structures formed by the accretion of several single-layered aggregates. These multilayered structures characteristically are found in Carcharhinus falciformis, C. limbatus, Carcharhinus obscurus, C. plumbeus, Carcharhinus porosus, Prionace gluaca, Rhizoprionodon terraenovae, and Sphyrna lewini. Sperm aggregates of all types are stored between the septa and in the lumen of the terminal ampulla of the epididymis. In their various forms they are the final product of the mature male elasmobranch reproductive tract. In a male with mature claspers, the presence of sperm aggregates is a more reliable indicator of maturity and sexual activity than is clasper condition alone. © 1994 Wiley-Liss, Inc.     

Detection of interspecies hybridisation in Chondrichthyes: hybrids and hybrid offspring between Australian (Carcharhinus tilstoni) and common (C. limbatus) blacktip shark found in an Australian fishery

Interspecies hybridisation in nature is a well-studied phenomenon, but it has not been analysed using genetic markers in the class Chondrichthyes (sharks, rays and chimeras). Two black-tip whaler shark species (Australian, Carcharhinus tilstoni; Common, C. limbatus) have overlapping distributions in Australia, distinct mitochondrial DNA sequence (ND4, COI, control region) and distinct morphological features such as length at sexual maturity, length at birth and number of vertebrae. A mismatch was observed between species identification using mtDNA sequence and species identification using morphological characters. To test whether hybridisation between the two species was responsible, a nuclear gene with species-specific mutations was sequenced. Extensive interspecies hybridisation was found to be occurring. Hybrids were found from five locations on the eastern Australian coastline, spanning 2,000 km. If hybrid fitness is low and hybrids are common, then fisheries recruitment may be overestimated and the productivity of the black-tip shark fishery may be well below that required to support commercial exploitation. To guard against identification errors, the likelihood of hybridisation and subsequent introgression should be assessed prior to using mtDNA (e.g. barcoding) to identify shark species. The C. limbatus–C. tilstoni species complex provides a unique opportunity to investigate the ability of sharks to adapt to environmental change, in particular, the impact of hybridization on species distributions which favour C. tilstoni along the north and C. limbatus along the south eastern Australian coastline.     

A mitochondrial species identification assay for Australian blacktip sharks (Carcharhinus tilstoni, C. limbatus and C. amblyrhynchoides) using real-time PCR and high-resolution melt analysis

Tropical Australian shark fisheries target two morphologically indistinguishable blacktip sharks, the Australian blacktip (Carcharhinus tilstoni) and the common blacktip (C. limbatus). Their relative contributions to northern and eastern Australian coastal fisheries are unclear because of species identification difficulties. The two species differ in their number of precaudal vertebrae, which is difficult and time consuming to obtain in the field. But, the two species can be distinguished genetically with diagnostic mutations in their mitochondrial DNA ND4 gene. A third closely related sister species, the graceful shark C. amblyrhynchoides, can also be distinguished by species‐specific mutations in this gene. DNA sequencing is an effective diagnostic tool, but is relatively expensive and time consuming. In contrast, real‐time high‐resolution melt (HRM) PCR assays are rapid and relatively inexpensive. These assays amplify regions of DNA with species‐specific genetic mutations that result in PCR products with unique melt profiles. A real‐time HRM PCR species‐diagnostic assay (RT‐HRM‐PCR) has been developed based on the mtDNA ND4 gene for rapid typing of C. tilstoni, C. limbatus and C. amblyrhynchoides. The assay was developed using ND4 sequences from 66 C. tilstoni, 33. C. limbatus and five C. amblyrhynchoides collected from Indonesia and Australian states and territories; Western Australia, the Northern Territory, Queensland and New South Wales. The assay was shown to be 100% accurate on 160 unknown blacktip shark tissue samples by full mtDNA ND4 sequencing.     

A new metric for measuring condition in large predatory sharks

A simple metric (span condition analysis; SCA) is presented for quantifying the condition of sharks based on four measurements of body girth relative to body length. Data on 104 live sharks from four species that vary in body form, behaviour and habitat use (Carcharhinus leucas, Carcharhinus limbatus, Ginglymostoma cirratum and Galeocerdo cuvier) are given. Condition shows similar levels of variability among individuals within each species. Carcharhinus leucas showed a positive relationship between condition and body size, whereas the other three species showed no relationship. There was little evidence for strong differences in condition between males and females, although more male sharks are needed for some species (e.g. G. cuvier) to verify this finding. SCA is potentially viable for other large marine or terrestrial animals that are captured live and then released.     

Size,sex and seasonal patterns in the assemblage of Carcharhiniformes in a sub‐tropical bay

Size, sex and seasonal patterns among Carcharhiniformes were examined in shallow regions of Moreton Bay, Queensland, Australia. A total of 1259 sharks were caught, comprising 13 species. The Australian sharpnose shark Rhizoprionodon taylori and the blacktip complex Carcharhinus limbatus–Carcharhinus tilstoni comprised 55% of all shark individuals. Neonates were observed for five species including the dusky shark Carcharhinus obscurus, which contrary to previous reports was relatively abundant in shallow, predominantly estuarine waters. Three contrasting patterns of occurrence were observed: smaller species were abundant and present throughout much of their ontogeny, larger species were mainly caught as neonates or juveniles and vagrant species were only caught during the warmer months. The shark assemblage differed significantly among seasons. While many species were observed during the warmer months, species diversity was lower in winter when C. obscurus comprised 43% of the catch. Overall, the results indicated that spatial and temporal distribution patterns were not synchronous for all species. The capture of small numbers of neonate C. obscurus in late autumn and winter demonstrates that parturition among Carcharhiniformes is not confined to spring and summer in sub‐tropical waters.     

Diel movements of the blacktip shark (<Emphasis Type="Italic">Carcharhinus limbatus</Emphasis>) in a Caribbean nursery

The blacktip shark (Carcharhinus limbatus) is a common coastal species in tropical and subtropical waters around the world. To examine the fine-scale movement ecology of this species in a Caribbean nursery, 17 neonate blacktip sharks were acoustically tagged in May, 2012 and tracked for one year in Coral Bay, St John, USVI. By quantifying linear movement and shifts in position from a fixed Inner harbor location, we identified a diel movement pattern where blacktip sharks spend daylight hours within core habitat of Inner Coral Harbor and move each night to the central and outer portions of the Bay, a linear shift of 174–934 m. When compared to standard home range calculations applied to the overall movement data, these nightly positions were outside of the 95% activity space and, therefore, undetected using traditional space utilization methods, despite their predictable daily occurrence. Cluster analysis and nonmetric multidimensional scaling indicated distinct movement periods and locations: daytime (sun up) within Inner Coral Harbor; nighttime (sun down) in the center of the Bay; and brief periods approximately six hours after sunset at the mouth of the Bay. This diel shift in habitat use is likely associated with nocturnal foraging because it coincides with similar shifts in potential prey species. Habitat and resource management that incorporates the blacktip shark movements described herein is critical to the protection of these vulnerable life stages. The findings of this paper advance the understanding of blacktip shark behavior and acoustic telemetry experimental design.     

Utilisation of a tropical bay as a nursery area by sharks of the families Carcharhinidae and Sphyrnidae

Synopsis At least eight species of sharks of the families Carcharhinidae and Sphyrnidae use Cleveland Bay in northern Australia as a communal nursery area.Carcharhinus dussumieri, C. fitzroyensis, C. limbatus andC. tilstoni use the bay as a seasonal primary nursery, with juveniles occurring in it for only a few months each year immediately after birth. Alternatively,Carcharhinus sorrah, Rhizoprionodon acutus andR. taylori use the bay as a year-round primary and secondary nursery, with juveniles remaining in it up to the size at maturity. AdultR. taylori also persist in the bay, a behavioural pattern possibly explained by their small maximum size. While present immediately after birth the type of utilisation pattern displayed bySphyrna lewini could not be clarified in this study. Although diets of these species in the bay are similar, there is probably little direct competition for food due to the highly productive habitats in the bay supporting an abundance of food resources. The highest numbers of juveniles occur when prey species are the most abundant, and when temporal separation of some seasonally-occurring species of sharks in effect.     

Characterization of microsatellite loci isolated from the blacktip shark and their utility in requiem and hammerhead sharks

We isolated and characterized 16 microsatellite loci from the blacktip shark, Carcharhinus limbatus, and tested cross‐species amplification in 11 Carcharhinus species and five additional shark genera. Thirty‐six (1.6%) and 180 (48%) colonies were positive for dinucleotide repeat motifs from unenriched and enriched libraries, respectively. Heterozygosities of polymorphic loci ranged from 0.04 to 0.96 with two to 22 alleles per locus. Amplification products were observed at nine to 13 loci (five to 11 of which where polymorphic) in 10 Carcharhinus species. Several loci were also polymorphic in each of the additional genera examined.     

Habitat use and movement patterns of bull sharks Carcharhinus leucas determined using pop‐up satellite archival tags

Habitat use, movement and residency of bull sharks Carcharhinus leucas were determined using satellite pop‐up archival transmitting (PAT) tags throughout coastal areas in the U.S., Gulf of Mexico and waters off the south‐east U.S. From 2005 to 2007, 18 fish (mean size = 164 cm fork length, L_F) were tagged over all seasons. Fish retained tags for up to 85 days (median = 30 days). Based on geolocation data from initial tagging location to pop‐off location, C. leucas generally travelled c. 5–6 km day^?1 and travelled an average of 143·6 km. Overall, mean proportions of time at depth revealed C. leucas spent the majority of their time in waters <20 m. They exhibited significant differences among depths but were not found at a particular depth regardless of diurnal period. Most fish occupied temperatures c. 32° C with individuals found mostly between 26 and 33° C. Geolocation data for C. leucas were generally poor and varied considerably but tracks for two individuals revealed long distance movements. One fish travelled from the south‐east coast of the U.S. to coastal Texas near Galveston while another moved up the east coast of the U.S. to South Carolina. Data on C. leucas movements indicated that they are found primarily in shallower waters and tend to remain in the same location over long periods. While some individuals made large‐scale movements over open ocean areas, the results emphasize the importance of the coastal zone for this species as potential essential habitat, particularly in areas of high freshwater inflow.     

Length – length relationships of 16 Caribbean elasmobranchs

Elasmobranchs are commonly landed without fins and heads; however, the knowledge of total length is necessary for fishery management. We provide useful equations to extrapolate partial from elasmobranch carcasses lengths, to total lengths. Length‐Length Relationships (LLR) are described for 16 commercial elasmobranch species all included in the IUCN Red List: Hexanchus nakamurai, Heptranchias perlo, Squalus cubensis, Squatina dumeril, Scyliorhinus boa, Mustelus minicanis, M. higmani, M. norrisi, Carcharhinus acronotus, C. falciformis, C. limbatus, Galeocerdo cuvier, Rhizoprionodon lalandii, R. porosus, Sphyrna lewini and Pseudobatos percellens. This study provide new LLR equations and rsepresent an improvement in the knowledge of these species.     

Seed beetle survivorship,growth and egg size plasticity in a paloverde hybrid zone

1. Although numerous studies have examined the ecology of plant resistance to herbivores and the distribution of herbivores within plant hybrid zones, few have examined how plant hybridization influences herbivore growth, development, or life history. The experiment reported here examines variation in survivorship, development time, and final adult body size of Stator limbatus reared on seeds of parental and hybrid Cercidium floridum-×-C. microphyllum trees from a paloverde hybrid zone in eastern California. Because S. limbatus exhibits egg size plasticity in response to host species, the size of eggs that females lay on hybrid and parental plants is also examined. 2. The hypotheses (a) that seeds of hybrid trees are intermediate between those of the two parental species in their resistance to penetration by S. limbatus larvae; (b) that seeds of hybrid trees are intermediate in their suitability for the growth of larvae that successfully penetrate the seed-coat; (c) that female S. limbatus can distinguish between hybrid trees and pure-bred trees, as quantified by the size of eggs they lay on seeds of each taxon, and (d) that female S. limbatus can distinguish among individual hybrid trees, are tested. 3. On average, S. limbatus survivorship was lower, development time longer, and emergence body mass lower on seeds of C. floridum than on seeds of C. microphyllum. Seeds of hybrid trees were, on average (across trees), intermediate between seeds of the parental species in the resistance of their seed-coats to penetration by S. limbatus larvae and in their suitability for larval growth. Individual hybrid trees also varied in the resistance of their seeds to, and the suitability of their seeds for, S. limbatus larvae. 4. Female S. limbatus laid significantly larger eggs on seeds of C. floridum than on seeds of C. microphyllum, and, on average, intermediate size eggs on hybrid trees. The size of eggs laid by females also varied among hybrid trees, with females laying C. floridum-sized eggs on some trees, and C. microphyllum-sized eggs on other trees. These results suggest that females have at least some ability to distinguish among hybrid trees, but there was no evidence that females laid larger eggs on poorer quality hybrid trees.     

A specific plasminogen activator inhibitor‐1 antagonist derived from inactivated urokinase

Fibrinolysis is a process responsible for the dissolution of formed thrombi to re‐establish blood flow after thrombus formation. Plasminogen activator inhibitor‐1 (PAI‐1) inhibits urokinase‐type and tissue‐type plasminogen activator (uPA and tPA) and is the major negative regulator of fibrinolysis. Inhibition of PAI‐1 activity prevents thrombosis and accelerates fibrinolysis. However, a specific antagonist of PAI‐1 is currently unavailable for therapeutic use. We screened a panel of uPA variants with mutations at and near the active site to maximize their binding to PAI‐1 and identified a potent PAI‐1 antagonist, PAItrap. PAItrap is the serine protease domain of urokinase containing active‐site mutation (S195A) and four additional mutations (G37bR–R217L–C122A–N145Q). PAItrap inhibits human recombinant PAI‐1 with high potency (K_d = 0.15 nM) and high specificity. In vitro using human plasma, PAItrap showed significant thrombolytic activity by inhibiting endogenous PAI‐1. In addition, PAItrap inhibits both human and murine PAI‐1, allowing the evaluation in murine models. In vivo, using a laser‐induced thrombosis mouse model in which thrombus formation and fibrinolysis are monitored by intravital microscopy, PAItrap reduced fibrin generation and inhibited platelet accumulation following vascular injury. Therefore, this work demonstrates the feasibility to generate PAI‐1 inhibitors using inactivated urokinase.     

Population genetics of four heavily exploited shark species around the Arabian Peninsula

The northwestern Indian Ocean harbors a number of larger marine vertebrate taxa that warrant the investigation of genetic population structure given remarkable spatial heterogeneity in biological characteristics such as distribution, behavior, and morphology. Here, we investigate the genetic population structure of four commercially exploited shark species with different biological characteristics (Carcharhinus limbatus, Carcharhinus sorrah, Rhizoprionodon acutus, and Sphyrna lewini) between the Red Sea and all other water bodies surrounding the Arabian Peninsula. To assess intraspecific patterns of connectivity, we constructed statistical parsimony networks among haplotypes and estimated (1) population structure; and (2) time of most recent population expansion, based on mitochondrial control region DNA and a total of 20 microsatellites. Our analysis indicates that, even in smaller, less vagile shark species, there are no contemporary barriers to gene flow across the study region, while historical events, for example, Pleistocene glacial cycles, may have affected connectivity in C. sorrah and R. acutus. A parsimony network analysis provided evidence that Arabian S. lewini may represent a population segment that is distinct from other known stocks in the Indian Ocean, raising a new layer of conservation concern. Our results call for urgent regional cooperation to ensure the sustainable exploitation of sharks in the Arabian region.     

Resource-use dynamics of co-occurring chondrichthyans from the First Coast,North Florida,USA

Recent studies on shark assemblages on the northeast Florida and southeast Georgia coast (hereafter referred to collectively as the “First Coast”) have demonstrated differences in species and age-class composition of catch from previously characterized estuaries and newly surveyed area beaches, demonstrating that these regions may provide a critical habitat to different segments (i.e., life stages) of local shark populations. In this study, carbon and nitrogen stable isotopes (δ¹³C and δ¹⁵N) from muscle tissue and blood plasma were used to examine trophic dynamics (and temporal variability thereof) of the three dominant co-occurring species found along First Coast beaches (the Atlantic Sharpnose shark Rhizoprionodon terraenovae, Blacknose shark Carcharhinus acronotus and Blacktip shark Carcharhinus limbatus) to determine if they exhibit overlap in resource use along with spatial and temporal habitat use. Although considered spatially segregated from the beach species, a dominant, age-class species found in First Coast estuaries (juvenile Sandbar sharks Carcharhinus plumbeus) was also included in this analysis for comparison. Temporal variability of resource-use characteristics was detected at the species level. Resource-use overlap among species varied by tissue type and was generally higher for blood plasma, suggesting greater resource sharing over more recent time periods. Over longer time periods Atlantic Sharpnose and Blacktip sharks exhibited resource-use expansion, whereas Blacknose sharks exhibited a narrowing in resource use, suggesting a more specialized foraging strategy compared to the other species. The resource-use breadth of Sandbar sharks also expanded between blood plasma and muscle tissue. Significant size relationships were detected in Blacktip and Sandbar sharks, indicating ontogenetic resource shifts for both species. A diversity of highly productive resource pools likely support shark populations along the First Coast such that resource-use differentiation is not required to facilitate species co-occurrence. This work may shed light on understanding patterns of species co-occurrence as well as aid in future conservation efforts.     

Inclusion of South American samples reveals new population structuring of the blacktip shark (Carcharhinus limbatus) in the western Atlantic

Carcharhinus limbatus has a cosmopolitan distribution and marked genetic structuring, mainly because of its philopatric behavior. However, analysis of this structuring has not previously included South American populations. In the present study, we analyzed a sample of adult individuals collected on the northern coast of Brazil and compared the sequences of the mitochondrial control region with those of populations already genotyped. Relatively high haplotype diversity (12 haplotypes, genetic diversity of 0.796) was observed, similar to that in other populations but with a much larger number of private alleles. In contrast to populations studied previously, which were represented by neonates, the pronounced allelic variability found in the South American individuals may have resulted from migrations from other populations in the region that have yet to be genotyped. This population was also genetically distinct from the other Atlantic populations (F_st > 0.8), probably because of female philopatry, and apparently separated from the northwestern Atlantic group 1.39 million years ago. These findings indicate that the C. limbatus population from northern Brazil is genetically distinct from all other populations and should be considered as a different management unit for the protection of stocks.