Intraspecific genetic differentiation of Leporinus friderici (Anostomidae, Pisces) in French Guiana and Brazil: a genetic approach to the refuge theory

A genetic study was carried out on a neotropical fish species to illustrate the refuge theory, whose main principles are summarized. The geographical structure of the anostomid species Leporinus friderici was analysed in French Guiana and Brazil by horizontal starch gel electrophoresis. Fifteen enzymatic systems corresponding to 21 loci were studied, revealing the following particularities: (1) specimens of fish from six independent coastal rivers of French Guiana form two groups geographically situated on either side of the Kourou River; (2) two alleles can serve as geographic markers, Ldh2 ( l30 ) showing an affinity between the populations in eastern French Guiana and Brazil, and Me 1 ( 300 ) being specific to the west.
These observations are probably related to the refuges that were formed in the Quaternary in South America, especially on the Guiana Shield. We consider that the populations of French Guiana are separated into two groups at the boundary between the two migratory flows, one arising in the west from the refuge of the Guiana Shield and the other in the east from a nearby undetermined Amazonian refuge.     

Freshwater fish zoogeography in west Africa: faunal similarities between river basins

Synopsis Similarities between the freshwater fish faunas of 52 west African rivers have been investigated and three main zoogeographic regions recognized. The Sudanian region includes all rivers from Senegal to the Omo, as well as coastal basins from Ivory Coast to the Cross and the Wouri. The Upper Guinean region comprises the coastal basins from Guinea to Liberia and the Lower Guinean one, the coastal rivers of Cameroon and Gaboon. The Sudanian region can be sub-divided into a Sudanian region sensu stricto, including the Sahelo-Sudanese rivers, and the Eburneo-Ghanean region corresponding to coastal basins from the Cess (or Nipoué, Ivory Coast) to the Pra (Ghana). These delimitations give an highly significant within region faunal homogeneity, even if the effect of geographical proximity between rivers is removed. 21 to 71% of the fish species in each region are endemics. The present patterns of distribution are the result of past climatic and geological events affecting west Africa and, given this framework, the role of alternating wet and dry periods during the early Quarternary is emphasized as well as the importance of mountains as dispersal barriers. Role of recent river connections and links via lagoon is emphasized in explaining river faunal similarities within biogeographical regions.     

Euphorbiaceae of the Guianas: Annotated species checklist and key to the genera

An annotated checklist of species of Euphorbiaceae of the Guianas (Guyana, Surinam, French Guiana) and the adjacent region is presented and a key to the genera is provided. A total of 47 indigenous genera and 153 species are known from the Guianas, where species endemism is 14%, with the greatest number of endemics occurring in Guyana and the fewest in French Guiana. An additional 86 species and an additional seven genera are known from neighboring areas of the Guayana Region; many of these may be expected to occur in the Guianas. Taxa known only in cultivation in the Guianas include 22 species and an additional six genera. The following new combination is proposed,Croton vergarenae.     

Fish richness and species-habitat relationships in two coastal streams of French Guiana, South America

We examined the factors controlling fish species richness and taxa-habitat relationships in the Malmanoury and Karouabo coastal streams in French Guiana between the short and long rainy seasons. The aims were to evaluate the environmental factors that describe species richness on different scales and to define the ecological requirements of fish taxa in the two streams at that period of the year. We sampled ten regularly spaced freshwater sites in each stream with rotenone. We caught a total of 7725 individuals representing 52 taxa from 21 families and 6 orders. More taxa were caught in the Malmanoury (n=46) than in the Karouabo stream (n=37). These values augmented by the number of fish taxa caught only by gill nets in a parallel survey fitted very well to a log-log model of fish richness versus catchment area in Guianese rivers. Most of the fish taxa encountered in the Malmanoury and Karouabo streams were of freshwater origin and nearly all the fish species caught in these two small coastal streams were also found in the nearby Sinnamary River with the exceptions of the cichlid Heros severus and the characid Crenuchus spirulus. Moreover, no significant relationship was found between a size-independent estimate of fish richness and distance from the Ocean. Thus, despite their coastal position, the Malmanoury and Karouabo streams contained fish assemblages with strong continental affinities. At a local scale, independently of site size, those with relatively more habitat types harbored a relatively greater number of fish taxa. Canopy cover, water conductivity and bank length were the most important environmental variables for fish assemblage composition at that period of the year. Oxygen and vegetation participated also in defining fish habitat requirements but to a lesser extent. This revised version was published online in July 2006 with corrections to the Cover Date.     

Towards a generalized biogeography of the Southern Ocean benthos

Aim To investigate whether the biogeographical regions proposed by J. W. Hedgpeth and widely adopted by other authors hold true, are an oversimplification or with further data might show a unified Antarctic province. Location Southern Hemisphere. Methods The distributions of 1318 species of bivalves, 4656 species of gastropods, 1465 species of cheilostome and 167 species of cyclostome bryozoans were analysed for 29 regions in the Southern Hemisphere, including South American, South African, Tasmanian, New Zealand, sub‐Antarctic and Antarctic regions. We present data on species richness, rates of endemism, patterns of radiation, faunal similarities and multivariate biogeographical analyses. Results The most striking pattern to emerge from our data set of species counts per region was a strong east–west hemispheric asymmetry, with high species numbers in New Zealand, Tasmania and South Africa and low numbers in South America. In contrast, no difference was found in richness between the east and west parts of the Southern Ocean. We compared findings in our model taxa with published data on ascidians, cephalopods and pycnogonids. Further evidence of strong faunal links between the Antarctic and South America is reported in this study, although we found little evidence for a biogeographical relationship between the Antarctic or South America and New Zealand/Tasmania. Strong evidence exists for a long‐term influence of the Antarctic Circumpolar Current upon the distribution of Southern Ocean benthos. This is demonstrated by the reduced prevalence of South American species in the Antarctic and sub‐Antarctic with increasing distance from South America in the direction of the current. Three of our four study taxa (bivalves, cheilostomes and cyclostomes) show the Southern Ocean as a ‘single functional unit’ with no evidence for a biogeographical split between east and west. Main conclusions Unlike the biogeographical schemes previously proposed, we show that biogeographical regions in the Southern Ocean differ depending upon the class of animals being considered. Despite this we suggest that some general rules are viable, including species endemism rates of around 50%, a single Antarctic province and a definite distinction between the sub‐Antarctic islands influenced by South America and those of New Zealand.     

Habitat fragmentation and extinction rates within freshwater fish communities: a faunal relaxation approach

Aim To estimate population extinction rates within freshwater fish communities since the fragmentation of palaeo‐rivers due to sea level rise at the end of the Pleistocene; to combine this information with rates estimated by other approaches (population surveys, fossil records); and to build an empirical extinction–area relationship. Location Temperate rivers from the Northern Hemisphere, with a special focus on rivers discharging into the English Channel, in north‐western France. Methods (1) French rivers. We used a faunal relaxation approach to estimate extinction rates in coastal rivers after they became isolated by the sea level rise. Tributaries within the Seine were used to build a species–area relationship for a non‐fragmented river system to predict species richness in coastal rivers before their fragmentation. (2) Other rivers. Extinction rates obtained for four other Holarctic river systems fragmented at the end of the Pleistocene, the fragmented populations of one salmonid species (Japan) and the fossil records from the Mississippi Basin were included in the study. Results (1) French rivers. Within strictly freshwater fish species, rare and/or habitat specialist species were the most affected by fragmentation. In contrast, euryhaline species were not affected. A negative relationship between extinction rate and river basin size was observed. (2) Other rivers. Our study established a common scaling relationship for freshwater fish population extinction rates that spans seven orders of magnitude in river basin size. Main conclusions This study strongly suggests that extinctions of fish populations occurred within French coastal rivers after they became isolated 8000 years ago. The patterns observed at regional and inter‐continental scales are consistent with the expectation that large populations are less prone to extinction than small ones, resulting in a strong extinction–area relationship coherent over a large spatio‐temporal scale. Our study is the first multi‐scale quantitative assessment of background extinction patterns for freshwater fishes.     

Biogeography of freshwater fishes of the Balkan Peninsula

Delineating biogeographical regions is a critical step towards the establishment and evaluation of conservation priorities. In the present study, we analysed the distribution patterns of the freshwater fish of an understudied European biodiversity hotspot, the Balkan Peninsula. Based on the most extensive available database of native freshwater fish species distributions, we performed a hierarchical clustering analysis to identify the major biogeographical regions of the Balkan Peninsula. We also highlighted the ‘hottest hotspots’ of freshwater fish diversity across the delimited biogeographical regions by describing the patterns of species richness, endemic and vulnerable species; indicator species were also determined. The bioregionalisation scheme consisted of eight groups of drainage basins that correspond to distinct regions of the Balkan Peninsula. Overall, the delineated biogeographical regions varied in terms of species richness, endemism, vulnerability (i.e. extinction threats) and indicator species composition. From a conservation perspective, this study emphasises the prioritisation of areas characterised by high levels of irreplaceability (endemism) and vulnerability (i.e. the Attikobeotia region, Ionian Sea and Prespa Lakes) and stresses the necessity of implementing a network of protected freshwater areas across the Balkan Peninsula.     

Genetic structure of Melanotaenia australis at local and regional scales in the east Kimberley, Western Australia

The Kimberley region of Western Australia possesses a poorly studied freshwater fish fauna with high endemism in an aquatic landscape subject to monsoonal floods and dry season isolation. In the first population genetic study of freshwater fish in this region, the authors tested the effects of geographic barriers on genetic structure at multiple spatial scales in east Kimberley populations of the western rainbowfish, Melanotaenia australis , the most widespread and abundant species in the region. Based on allozyme comparisons, hierarchical analysis of F _ST revealed increasing genetic subdivision with spatial scale. Minimal genetic structure within creeklines demonstrated that wet season dispersal, rather than dry season isolation, determines genetic structure at small scales. At the scale of sub-catchments, a pattern of isolation by distance along creeklines was evident. Genetic subdivision between adjacent river systems was greater between rivers separated by a plateau than by lowlands. This implies greater connectivity of populations in lowland areas and may explain the greater similarity of the east Kimberly freshwater fish fauna with lowlands to the east than with the more rugged regions to the west. Similarly, greater connectivity between lowland populations may account for the on-average larger distribution of lowland Melanotaeniids.     

A new,arborescent species of Byttneria (Sterculiaceae) from French Guiana

Byttneria morii L. Barnett & Dorr from French Guiana is described and illustrated, and its taxonomic affinities are discussed. Also, a key to the species ofByttneria, that occur in the Guianas is provided.     

Space-time organization of riverine fish communities in French Guiana

Synopsis A riverine fish assemblage in French Guiana was examined over several consecutive years. Fish distribution was highly structured on at least 3 different scales: between rivers, between the different zones of the rivers and between the different biotopes studied in sampling areas. A temporal organisation of fish communities was also found, superimposed on the spatial structure. The latter was due to the seasonal variations of the water level, and allowed temporary access to flooded areas. The different space-time factors of organisation of fish communities presented here are discussed in regard to their contribution to the maintenance of the observed high species diversity.     

A new species of Asterogyne (Palmae) from French Guiana

Asterogyne guianensis, a new species from French Guiana, is described and illustrated. The differences between this and the morphologically similarA. spicata are given. A map and discussion of distribution is given for all five species of the genus. Studies on the Flora of the Guianas number 28.     

Shrub vegetation on tropical granitic inselbergs in French Guiana

Abstract. In French Guiana, inselbergs in the form of granite outcrops rise abruptly from the surrounding rain forest. They constitute isolated islands of a special type of vegetation restricted to this peculiar substrate. Shrub granitic vegetation, organized in thickets on open exposed rocks of inselbergs, are described using the Braun‐Blanquet method combined with Correspondence Analysis. This phytosociological study revealed only one particular shrub community on each inselberg, including predominantly evergreen and sclerophyllous shrubs, especially microphanerophytes, belonging to the Clusiaceae, Myrtaceae and Bombacaceae. These outcrop communities exhibit species endemic to the Guianas region and also species rare in French Guiana. Affinities with flora of other inselbergs and vegetation types in South America are examined and discussed. Reasons for observed floristic and structural changes in each community are also discussed.     

A multivariate approach to the determination of faunal structures among European butterfly species (Lepidoptera: Rhopalocera)

Multivariate analyses of 393 butterfly species over 85 geographical areas (R- and Q-data matrices) in Europe and North Africa have produced a consistent pattern of faunal structures (units and regions). Prominent features to emerge are the latitudinal zonation of geographical units and the division of the Mediterranean into western and eastern components; southwards in Europe, endemicity increases whereas faunal structures decrease in spatial dimensions. Central Europe–from the Urals to the British Isles–forms a single large faunal structure (extent unit and region). A model has been constructed to account for Pleistocene evolutionary changes and endemism in European butterflies and for the east-west taxonomic divisions in the extent faunal structure which dominates central Europe. Periodic Pleistocene climatic changes have resulted in cycles of population extinction, isolation, evolution and migration, but the nature and timing of events has depended on the environmental tolerances of species belonging to different faunal units. During Pleistocene glaciations, southern species have been relatively static and more isolated and have evolved independently. By comparison, northern species have been more mobile and have migrated over large distances. Contact and hybrid zones among cosmopolitan species in northern Europe are probably of some antiquity. They result from persistent survival and isolation of refuge populations in the west and east Mediterranean during glacial phases; dispersal from these refuges leads to their regeneration during each interglacial.     

Biogeographical regions of the Iberian peninsula based on freshwater fish and amphibian distributions

We classified the main Iberian river basins based on the presence and absence of freshwater fishes and amphibians. For both taxonomic groups we analysed three data sets; 1) endemic species only, to search for biotic boundaries related to historical events, 2) indigenous species, which include endemic ones, to search for biotic boundaries related to ecological factors, 3) indigenous and well-established introduced species, to assess the influence of man in the current biogeographical patterns of fishes and amphibians. We used both phenetic and cladistic methods, followed by a consensus analysis to provide an overall biogeographical pattern. Based on all fish distributions, the Iberian Peninsula is divided into three biogeographical regions: Cantabrian, Atlantic and Mediterranean, No boundary existed between the Cantabrian and Atlantic regions when only indigenous fish species were considered. This suggests that this boundary has been induced by man, probably through the differential introduction of fish species into reservoirs at one or other side of the boundary. Run-off and the size of the river basins are the environmental factors that distinguished the Atlantic and Mediterranean regions. However, regionalization based only on endemic freshwater fishes showed a latitudinal pattern that agrees with the paleogeographic events of the Upper Oligocene-Lower Miocene period. By contrast, one northern and one southern region were distinguished based on all amphibian distributions and on indigenous amphibians only, which suggests that human activity has not significantly affected the overall biogeographical pattern of amphibians in the Iberian Peninsula. Interannual predictability of precipitation best accounts for this regionalization. Based on endemic amphibians, the Iberian Peninsula is divided into three regions that closely resemble the three separate land areas of the Upper Eocene-Lower Oligocene period. The consensus between the biogeographical regions based on fishes and amphibians yields five pairs of basins. Geological origin of the basins seems to better explain the consensus between the biogeographical patterns of fishes and amphibians, whereas ecological factors probably contribute to the differences between them.     

Novae Gesneriaceae Neotropicarum XII. New species of Gesneriaceae from the Guianas

Five new species of Gesneriaceae are described from the Guianas:Nautilocalyx coccineus, Paradrymonia anisophylla, andParadrymonia barbata in the tribe Episcieae, from Guyana;Napeanthus angustifolius from French Guiana andNapeanthus rupicola from Guyana in the tribe Napeantheae.     

Unlocking biodiversity and conservation studies in high‐diversity environments using environmental DNA (eDNA): A test with Guianese freshwater fishes

Determining the species compositions of local assemblages is a prerequisite to understanding how anthropogenic disturbances affect biodiversity. However, biodiversity measurements often remain incomplete due to the limited efficiency of sampling methods. This is particularly true in freshwater tropical environments that host rich fish assemblages, for which assessments are uncertain and often rely on destructive methods. Developing an efficient and nondestructive method to assess biodiversity in tropical freshwaters is highly important. In this study, we tested the efficiency of environmental DNA (eDNA) metabarcoding to assess the fish diversity of 39 Guianese sites. We compared the diversity and composition of assemblages obtained using traditional and metabarcoding methods. More than 7,000 individual fish belonging to 203 Guianese fish species were collected by traditional sampling methods, and ~17 million reads were produced by metabarcoding, among which ~8 million reads were assigned to 148 fish taxonomic units, including 132 fish species. The two methods detected a similar number of species at each site, but the species identities partially matched. The assemblage compositions from the different drainage basins were better discriminated using metabarcoding, revealing that while traditional methods provide a more complete but spatially limited inventory of fish assemblages, metabarcoding provides a more partial but spatially extensive inventory. eDNA metabarcoding can therefore be used for rapid and large‐scale biodiversity assessments, while at a local scale, the two approaches are complementary and enable an understanding of realistic fish biodiversity.     

Smilax saülensis (Smilacaceae), a new species from French Guiana

Botanical exploration of the vicinity of Saül, French Guiana, with the goal of producing a manual of the vascular plant flora, has yielded a new species ofSmilax. A diagnostic characteristic that differentiates this new species from all other species ofSmilax known from the Guianas and the Amazonian region is the admedial ramified branching pattern of the tertiary leaf veins.     

Evolutionary history of the fish genus <Emphasis Type="Italic">Astyanax</Emphasis> Baird &; Girard (1854) (Actinopterygii,Characidae) in Mesoamerica reveals multiple morphological homoplasies

Background  

Mesoamerica is one of the world's most complex biogeographical regions, mostly due to its complex geological history. This complexity has led to interesting biogeographical processes that have resulted in the current diversity and distribution of fauna in the region. The fish genus Astyanax represents a useful model to assess biogeographical hypotheses due to it being one of the most diverse and widely distributed freshwater fish species in the New World. We used mitochondrial and nuclear DNA to evaluate phylogenetic relationships within the genus in Mesoamerica, and to develop historical biogeographical hypotheses to explain its current distribution.     

Biogeography of helminth parasites of freshwater fishes in Mexico: the search for patterns and processes

Aim To uncover and describe patterns of biogeography of helminth parasites in freshwater fishes of Mexico, and to understand processes that determine them. Three predictions about host‐specificity, faunal exchange in transitional areas, and the biogeographical ‘core’ fauna, are evaluated, all of which follow from a fundamental hypothesis: that parasites show characteristic associations with particular host clades. The parasite fauna of the southern Mexican cichlids and of the fishes of the Mesa Central are examined as case studies that reflect Neotropical and Nearctic historical influences. Location The region covered in this study includes most of Mexico, with emphasis on six biogeographical areas: the Yucatán Peninsula (area 1), the Grijalva‐Usumacinta drainage (area 2), the Papaloapan and Pánuco drainages (area 3), the Balsas drainage (area 4), the Lerma‐Santiago drainage (area 5), and the Bravo drainage (area 6). Methods A parasite data base containing all the records of helminth parasites of freshwater fishes of Mexico was filtered to extract records of adult helminth parasites in freshwater fishes from the six biogeographical areas designated in this study. Jaccard's similarity coefficients and cluster analyses (using upgma ) were used to analyse the extent of faunal similarity between the designated biogeographical areas and between host (fish) families. Taxonomic composition of parasite assemblages in different host groups was also qualitatively compared from summary data. These data were used to test the three main predictions. Results To date, 184 species of helminths (120 as adults) have been recorded from 127 freshwater fishes in Mexico (almost 33% of the total fish diversity of Mexico). Of these parasite species, 69 are digenetic flukes, 51 are nematodes, 33 are monogeneans, 25 are tapeworms, and only six are acanthocephalans. The data and analyses from the six biogeographical areas corroborate the predictions that: (1) the adult parasite fauna is largely circumscribed by higher levels of monophyletic host taxa (families, orders, etc.), and that this pattern is independent of areas; (2) areas within a certain biogeographical region, and consequently with similar fish composition (e.g. areas 1, 2 and 3) have more similar parasite faunas compared to areas with less similar fish faunal composition; and (3) ‘core’ parasite faunas persist to some extent in transitional areas with limited host‐sharing. Main conclusions Helminth biodiversity in Mexican freshwater fishes is determined by the historical and contemporary biogeography of their hosts. Host lineage specificity, mainly at the level of the host family, appears to be an important factor in the distribution of the parasites. Most fish families (Characidae, Cichlidae, Pimelodidae, Ictaluridae, Catsotomidae, Goodeidae, Atherinidae) possess their own characteristic ‘core’ helminth fauna, with limited host‐sharing in transitional areas (e.g. areas 3 and 4). A re‐evaluation of the helminth fauna of Mexican cichlids questions the hypothesis that cichlids lost parasites during the colonization of Mexico from South America. The evidence supports the idea that they acquired new parasites by host switching, possibly from marine or brackish‐water percomorphs. In contrast, the parasite fauna of the Mesa Central remains enigmatic and reflects the region's history of endemicity with historical marine and Nearctic connections.