石灰碳铵熏蒸与施用生物有机肥对连作黄瓜和西瓜枯萎病及生物量的影响

采用稀释涂布平板计数法,研究了石灰碳铵及碳铵熏蒸对黄瓜和西瓜连作土壤尖孢镰刀菌数量的影响,以及熏蒸后施用生物有机肥对黄瓜和西瓜枯萎病的防控效果及植株生长的影响.结果表明:与对照相比,石灰碳铵及碳铵熏蒸后,连作土壤中黄瓜尖孢镰刀菌的数量分别下降95.4%及71.4%,西瓜尖孢镰刀菌的数量分别下降87.2%及64.2%;多因素方差分析表明,熏蒸、施用有机肥及作物种类均对土壤中尖孢菌数量、枯萎病发病率、防控率及生物量有显著影响;与未熏蒸施用普通有机肥对照相比,石灰碳铵熏蒸后施用生物有机肥能显著减少后茬黄瓜或西瓜土壤中尖孢镰刀菌的数量并显著降低枯萎病发病率,防控率高达91.9%及92.5%,同时显著增加了植株的株高、茎粗、SPAD值及干质量.表明石灰碳铵熏蒸及施用生物有机肥能够降低土壤中尖孢镰刀菌数量,有效防控黄瓜和西瓜枯萎病的发生并促进其植株生长.     

石灰碳铵熏蒸联合生物有机肥对香蕉枯萎病和细菌群落的影响

以连续种植的香蕉枯萎病高发病蕉园为试验点,通过实时定量PCR和高通量测序等方法,研究了田间条件下石灰碳铵熏蒸联合生物有机肥施用对香蕉枯萎病的防治效果,以及对土壤细菌群落结构和组成的影响。结果表明: 与不熏蒸施用有机肥(OF)相比,香蕉枯萎病发病率在施用有机肥前使用石灰碳铵进行熏蒸处理(LAOF)和施用生物有机肥前使用石灰碳铵进行熏蒸处理(LABF)中分别降低了13.3%和21.7%,病原菌的拷贝数分别降低了22.4%和33.0%。与OF处理相比,石灰碳铵熏蒸联合不同肥料施用均显著降低了细菌的丰富度和多样性,形成了明显不同的群落结构,且熏蒸对群落组成的差异产生了决定性的影响。LABF的细菌丰富度和多样性均低于其他处理,群落组成也与其他处理存在明显差异。与OF处理相比,熏蒸处理(LAOF和LABF)显著增加了土壤中水恒杆菌、布鲁式菌和漯河杆菌属的相对丰度,且在LABF中的相对丰度均高于LAOF,水恒杆菌和布鲁式菌的相对丰度差异显著。在田间条件下,施用生物有机肥之前使用石灰碳铵进行熏蒸处理能够显著降低病原菌数量,改变土壤细菌群落结构,激发土壤有益微生物,从而减少香蕉枯萎病的发生。     

EM复合菌对新疆色素辣椒生长及根际细菌群落的影响

【背景】Effective microorganisms （EM）复合菌在我国农业种植上的应用越来越广泛,但对色素辣椒的促生作用与根际细菌群落结构的影响未见报道。【目的】评估EM复合菌对新疆色素辣椒的促生长作用,并分析其对色素辣椒根际细菌群落组成的影响。【方法】通过随水灌溉方式将EM复合菌接种到色素辣椒根部,在收获期测定辣椒生长指标、土壤养分和酶活活性,明确EM复合菌对辣椒生长和土壤质量的影响;利用16S rRNA基因高通量测序技术测定EM复合菌对辣椒根系细菌群落组成和结构的影响。【结果】与对照组相比,EM复合菌的施用使辣椒株高、鲜重、单个果重和单株结果数分别提高23.89%、85.41%、42.31%和46.04%;土壤中碱解氮和速效磷含量分别提高5.83%和13.39%,土壤中脲酶、蔗糖酶和过氧化物酶的活性分别提高11.47%、9.42%和21.43%;施用EM复合菌显著改变辣椒根际微生物群落的α多样性和β多样性,提高有益菌群变形菌门（Proteobacteria）、酸杆菌门（Acidobacteria）、芽单胞菌门（Gemmatimonadetes）、放线菌门（Actinobacteria）和厚壁菌门（Firmicutes）的相对丰度,其中变形菌门黄单胞菌科（Xanthomonadaceae）的相对丰度增加119.32%;在属的水平上,施用EM复合菌显著增加了藤黄色杆菌属（Luteitalea）、藤黄单胞菌属（Luteimonas）、鞘脂单胞菌属（Sphingobacterium）和盐单胞菌属（Halomonas）的相对丰度,尤其是藤黄单胞菌属的丰度提高244.17%,同时显著降低黄杆菌属（Flavobacterium）的相对丰度。此外,与土壤理化指标呈正相关的微生物菌群相对丰度也显著升高。【结论】EM复合菌能够通过提高土壤营养成分与酶活活性,调控根系微生物群落结构,富集大量在盐碱地生存能力较强的有益菌群,进而起到促进色素辣椒生长的功效。     

The combination of biochar and PGPBs stimulates the differentiation in rhizosphere soil microbiome and metabolites to suppress soil-borne pathogens under consecutive monoculture regimes

The application of biochar and plant-growth-promoting bacteria (PGPBs) in biocontrol soil-borne pathogens has garnered worldwide interest recently. However, how agricultural replanting disease is alleviated by a combination of biochar and PGPBs treatment (SYBB) remains largely unexplored. In this study, we investigated the beneficial effects of single biochar addition and the combination of biochar and PGPBs on alleviating replanting disease by altering the rhizosphere microbiome and metabolites. Our field experiment showed that the SYBB treatment had a better alleviating effect on replanting disease than the single biochar addition. The study indicated the dominant effect of deterministic processes on the bacterial community and of stochastic processes on the fungal community under biochar and PGPBs treatment. The combination of biochar and PGPBs tended to convert the stochastic processes of fungal community assembly into deterministic processes. We found SYBB treatment increased the abundance of potentially beneficial Pseudomonas, Lysobacter, Gemmatimonadetes and Nitrospira, and decreasing the abundance of potentially pathogenic Fusarium, Talaromyces and Fusarium oxysporum. Moreover, the SYBB treatment increased the abundances of carbohydrates, fatty acids and plant hormones, and decreased the abundances of amino acids in the rhizosphere soil. Co-occurrence network analysis indicated that SYBB treatment increased the connections within the microbial communities and drove the alteration of co-occurrence network among the microbial communities and metabolites, which increased positive correlations in bacteria-metabolite networks and decreased positive correlations in fungi-metabolite networks. Spearman correlation analysis showed the abundances of beneficial Streptomyces, Pseudomonas and Lysobacter were significantly and positively correlated to the metabolites most increased under SYBB treatment. The combination of biochar and PGPBs alleviated replanting disease by mediating the change of rhizosphere soil metabolites, and stimulating the proliferation of indigenous and beneficial soil microbes. The research results are intended to provide the basis for new strategies for green and sustainable remediation of soil-borne pathogens.     

施磷对干旱胁迫下箭竹根际土壤养分及微生物群落的影响

以箭竹及其根际土壤作为研究对象,采用两因素随机区组实验,设置2种水分处理（正常浇水和干旱胁迫）和2种施磷量处理（施磷和不施磷）,探究施磷对干旱胁迫下箭竹根际土壤养分及微生物群落结构和多样性的影响。结果表明：（1）干旱胁迫显著降低了箭竹根际土壤中微生物量碳、可溶性有机氮和有效磷的含量,虽对箭竹根际土壤微生物群落的多样性无显著影响,但显著降低了箭竹根际土壤中总PLFA（phospholipid fatty acid contents）的含量和真菌、细菌、革兰氏阳性菌与革兰氏阴性菌的PLFA含量以及革兰氏阳性菌/革兰氏阴性菌的PLFA比值,显著改变了箭竹根际土壤微生物群落结构,结果显著降低了箭竹的生物量。（2）施磷显著增加了受旱箭竹根际土壤中微生物量碳和有效磷的含量,虽大体上对受旱箭竹根际土壤微生物群落的多样性无显著影响,但显著增加了受旱箭竹根际土壤中总PLFA和真菌PLFA的含量,并在一定程度上增加了细菌、革兰氏阳性菌、革兰氏阴性菌和放线菌的PLFA含量以及革兰氏阳性菌/革兰氏阴性菌和真菌/细菌的PLFA比值,也在一定程度上改善了受旱箭竹根际土壤微生物群落结构,从而改善受旱箭竹的生长。（3）主成分分析表明,干旱对箭竹根际土壤微生物群落结构的影响显著,而施磷的影响不明显。（4）相关分析发现,箭竹根际土壤微生物群落结构与箭竹根际土壤微生物量碳、可溶性有机氮及箭竹生物量呈显著正相关。综上,干旱降低了箭竹根际土壤养分含量和微生物生物量,改变了箭竹根际土壤微生物群落结构,抑制了箭竹的生长;施磷能增加受旱箭竹根际土壤养分含量和微生物生物量,改善受旱箭竹根际土壤微生物群落结构,进而改善受旱箭竹的生长。     

甘草根际土壤微生物群落对长期连作的响应

光果甘草连年种植所引起的甘草产量下降、植株发育不良、根腐病频发严重影响甘草产业的持续发展,造成了重大的经济损失。然而,其机制却并不清楚。应用下一代测序技术,对未种植过光果甘草的土壤（Control）,生长1a （Gg1）和生长5a （Gg5）光果甘草的根际土壤行16S rDNA和18S rDNA ITS测序,并对比分析了甘草根际土壤和对照组之间,以及不同种植年限甘草根际土壤之间的微生物群落结构差异,以期探究光果甘草连作障碍的原因。结果表明,光果甘草连作增加了根际土壤细菌群落的丰富度,降低了真菌群落的丰富度（P>0.05）。主坐标分析显示,光果甘草的根际土壤微生物组成与对照组之间存在显著差异,并且光果甘草的种植年限显著地影响了根际土壤微生物的群落组成。在门水平上,光果甘草连作显著地增加了真菌Blastocladiomycota和Mortierellomycota的相对多度（P<0.05）。在属水平上,光果甘草连作显著地降低了有益细菌Arthrobacter和Pseudomona及有益真菌Naganishia的相对多度,而增加了病原真菌Fusarium和Thanatephorus的相对多度。由此推测,光果甘草根际土壤微生物群落结构的改变,以及有益微生物相对多度的降低和病原微生物相对多度的增加可能是导致光果甘草发生连作障碍的重要原因之一。     

香蕉假茎生物炭对根际土壤细菌丰度和群落结构的影响

【目的】将香蕉假茎生物炭施加到土壤,探讨香蕉假茎生物炭对香蕉根际土壤微生物的影响。【方法】以香蕉假茎生物炭(BPB)0、1%、2%、3%的质量比与土壤均匀混合。盆栽培养3个月后分离香蕉根际土壤。采用16S rRNA高通量测序技术对根际土壤细菌群落结构和丰度进行表征。【结果】提高BPB施用量可增加土壤有机质、有效钾、有效磷含量,提高土壤pH值,但降低有效氮浓度。在1%BPB样品中获得2278个OTUs,其显示细菌群落中的最大多样性。施加3%的BPB处理土壤,拟杆菌门、疣微菌门和厚壁菌门的相对丰度显著增加;放线菌门、酸杆菌门、芽单胞菌门明显减少。主成分分析发现,1%BPB和2%BPB处理的样本之间土壤细菌群落相似。【结论】施加不同比例BPB改变了根际土壤中细菌丰度和群落结构,且高比例添加改变更加明显。     

米修链霉菌TF78对香蕉枯萎病的田间防效及根际土壤微生物的影响

【背景】香蕉枯萎病是香蕉生产上的毁灭性病害,生物防治是遏制该病害发生的有效手段。在前期的研究中,从健康香蕉根际土壤中分离获得一株对香蕉枯萎病具有良好盆栽防治效果的生防菌——米修链霉菌(Streptomyces misionensis) TF78,但其对香蕉枯萎病的田间生防潜力和对土壤微生物环境的影响尚不清楚。【目的】评价米修链霉菌TF78对香蕉枯萎病的田间防治效果,明确其对香蕉根际土壤微生物群落的影响。【方法】选取两块发病香蕉园,测定该生防菌株对香蕉枯萎病的防治效果,并利用扩增子测序技术分析施用菌剂组和空白对照组共12份香蕉根际土壤的微生物多样性和丰度。【结果】米修链霉菌TF78对两块香蕉园的田间防效分别达55.30%和45.32%。该生防菌株处理组的物种稀释曲线坡度大于空白对照组,并显著富集了优势种群梳霉门(Kickxellomycota),消减了绿弯菌门(Chloroflexi)、酸杆菌门(Acidobacteria)和苔藓杆菌(Bryobacter)的丰度,对土壤中优势种群变形菌门(Proteobacteria)、厚壁菌门(Firmicutes)、放线菌门(Actinobacteria)、芽单胞菌门(Gemmatimonadetes)及木霉属(Trichoderma)、鞘氨醇单胞菌属(Sphingomonas)、寡养单胞菌属(Stenotrophomonas)和芽孢杆菌属(Bacillus)的相对丰度影响不显著。【结论】米修链霉菌TF78塑造了不利于香蕉枯萎病菌Fusarium oxysporum f.sp.cubense存活的土壤环境,有效降低了田间香蕉枯萎病的发生,同时对土壤中大部分具有重要生态功能和抑菌功能的优势微生物种群影响不显著。该研究结果为米修链霉菌TF78的进一步开发应用奠定了基础。     

Soil microbial community shifts explain habitat heterogeneity in two Haloxylon species from a nutrient perspective

Haloxylon ammodendron and Haloxylon persicum (as sister taxa) are dominant shrubs in the Gurbantunggut Desert. The former grows in inter-dune lowlands while the latter in sand dunes. However, little information is available regarding the possible role of soil microorganisms in the habitat heterogeneity in the two Haloxylon species from a nutrient perspective. Rhizosphere is the interface of plant–microbe–soil interactions and fertile islands usually occur around the roots of desert shrubs. Given this, we applied quantitative real-time PCR combined with MiSeq amplicon sequencing to compare their rhizosphere effects on microbial abundance and community structures at three soil depths (0–20, 20–40, and 40–60 cm). The rhizosphere effects on microbial activity (respiration) and soil properties had also been estimated. The rhizospheres of both shrubs exerted significant positive effects on microbial activity and abundance (e.g., eukarya, bacteria, and nitrogen-fixing microbes). The rhizosphere effect of H. ammodendron on microbial activity and abundance of bacteria and nitrogen-fixing microbes was greater than that of H. persicum. However, the fertile island effect of H. ammodendron was weaker than that of H. persicum. Moreover, there existed distinct differences in microbial community structure between the two rhizosphere soils. Soil available nitrogen, especially nitrate nitrogen, was shown to be a driver of microbial community differentiation among rhizosphere and non-rhizosphere soils in the desert. In general, the rhizosphere of H. ammodendron recruited more copiotrophs (e.g., Firmicutes, Bacteroidetes, and Proteobacteria), nitrogen-fixing microbes and ammonia-oxidizing bacteria, and with stronger microbial activities. This helps it maintain a competitive advantage in relatively nutrient-rich lowlands. Haloxylon persicum relied more on fungi, actinomycetes, archaea (including ammonia-oxidizing archaea), and eukarya, with higher nutrient use efficiency, which help it adapt to the harsher dune crests. This study provides insights into the microbial mechanisms of habitat heterogeneity in two Haloxylon species in the poor desert soil.     

不同油葵品种对盐碱地根际土壤酶活性及微生物群落功能多样性的影响

通过盆栽试验,研究了新葵4号、新葵6号、新葵10号和美国矮大头4个油葵品种对盐碱地土壤理化、酶活性和微生物群落功能多样性的影响,以期筛选出更适宜改善盐碱地土壤质量的油葵品种。结果表明,种植新葵6号对降低盐碱地根际土壤pH值、提高土壤全氮含量和蔗糖酶活性的效果最为显著,新葵4号对提高根际土壤碱解氮、速效磷、速效钾含量以及脲酶和磷酸酶活性的效果最为显著;种植这4个品种的油葵均能显著(72 h,P0.05)提高盐碱地根际土壤微生物对31种碳源的平均利用率(Average well color development,AWCD),并呈现如下规律:新葵4号新葵6号美国矮大头新葵10号CK。种植这4个油葵品种均不同程度地提高了盐碱地根际土壤微生物群落的Shannon多样性指数(H)、Shannon优势度指数(D)和碳源利用丰富度指数(S),并呈现出相似的规律:新葵4号根际土的微生物多样性指数最大,而CK的最小,且显著高于CK。主成分分析表明,种植油葵改善了盐碱地根际土壤微生物的群落组成;碳水化合物、氨基酸、羧酸类化合物和聚合物是盐碱地土壤微生物利用的主要碳源。因此,在盐碱地中种植油葵可提高相关土壤理化性质和酶的活性,改善微生物功能多样性,优化盐碱地微生物的群落结构,尤其是种植新葵4号对盐碱地的改良效果最为显著。     

氨水熏蒸对高发枯萎病蕉园土壤微生物区系及发病率的影响

采用涂布计数及荧光定量PCR和PCR-DGGE技术,研究了氨水熏蒸对土壤微生物区系的影响,并研究氨水熏蒸对高发枯萎病香蕉园枯萎病的防控效果和对香蕉产量的影响。结果表明:与熏蒸前相比,高发枯萎病香蕉园土壤施用130 L/667 m²的氨水熏蒸后,尖孢镰刀菌的数量下降了1个log单位;与对照处理相比,下降了0.5个log单位。氨水熏蒸后土壤可培养细菌数量与对照相比没有显著差异,但显著低于熏蒸前,可培养真菌的数量显著低于熏蒸前和对照;可培养细菌真菌的比值与熏蒸前相比没有显著差异,但显著高于对照。与对照及熏蒸前相比,氨水熏蒸后土壤中总细菌及总真菌的数量显著下降;熏蒸前后及对照处理总细菌真菌的比值没有明显差异。各土壤样品总细菌及真菌群落结构的PCR-DGGE分析结果表明,氨水熏蒸后土壤微生物在聚类上和条带组成上均与熏蒸前及对照有显著性差异。与对照相比,氨水熏蒸处理使香蕉枯萎病的发病率降低了20%,每666.7m²增产1.25t。以上结果表明,利用合适浓度的氨水对高发枯萎病香蕉园的土壤熏蒸,能够有效改良土壤微生物区系和降低枯萎病的发生。     

Effect of the combination of bio-organic fertiliser with Bacillus amyloliquefaciens NJN-6 on the control of banana Fusarium wilt disease,crop production and banana rhizosphere culturable microflora

Soil amended with organic amendments has been suggested to be a strategy for managing the Fusarium wilt disease which severely hindered the banana production. The effects of four fertilisation regimes, including chemical fertiliser, manure composts and bio-organic fertiliser (BIO) containing Bacillus amyloliquefaciens NJN-6 for 2-year continuous application on the banana Fusarium wilt disease incidence, crop yield and rhizosphere culturable microbial community were investigated. To explore the soil microflora, plate counting method, in vitro screening method for antagonism, eco-physiological index and culture-dependent denaturing gradient gel electrophoresis method (CD DGGE) were used. The highest banana yield, culturable bacteria, actinobacteria and Bacillus populations, culturable bacteria to fungi (B/F) value, antagonistic Bacillus ratio and lowest Fusarium wilt disease incidence were observed in the BIO treatment. Based on CD DGGE results, the BIO application significantly altered the soil bacteria structure and showed highest richness and diversity. The phylogenetic analysis of the selected bands showed that the most abundant phyla were Proteobacteria and Bacteroidetes and BIO application enriched the genera Comamonas, Chitinophaga, the species Bacillus flexus and uncultured Bacillus. All the results showed that 2-year continuous application of BIO containing B. amyloliquefaciens NJN-6 more effectively controlled Fusarium wilt disease and improved fruit yields under field conditions and modulated banana rhizosphere microflora.     

不同植物对黄顶菊根际土壤微生物和土壤养分的影响

[目的] 不同植物对外来入侵植物的抵御能力不同,研究不同植物对入侵植物根际土壤生态的影响可为筛选入侵植物的竞争替代植物提供科学依据。[方法] 利用同质园试验,以入侵植物黄顶菊为研究对象,设置黄顶菊单种、黄顶菊与不同植物（地肤、苘麻、苏丹草、反枝苋）混种处理,采用磷脂脂肪酸分析方法来研究不同植物对黄顶菊根际土壤微生物群落结构的影响,并结合土壤养分的变化探究不同植物对黄顶菊根际土壤生态的影响。[结果] 与黄顶菊单种相比,地肤和苘麻降低了黄顶菊根际微生物的总含量,改变了黄顶菊根际微生物群落结构。地肤、苘麻能竞争性抑制黄顶菊对铵态氮的吸收,从而抑制黄顶菊的生长。[结论] 不同植物的抵御能力与其土壤生态有关,替代植物通过改变黄顶菊根际土壤微生物,抑制黄顶菊对氮的吸收,从而抑制黄顶菊的生长,实现对黄顶菊的替代控制。     

Deciphering bacterial community variation during soil and leaf treatments with biologicals and biofertilizers to control huanglongbing in citrus trees

The aim of the current study was to gain a clearer understanding of the bacteria involved in different treatments to control huanglongbing in citrus trees. The treatments included additions in soil or on leaf. In soil, there were two treatments, one was addition of biofertilizer mainly consisting of Brevibacillus laterosporus, and another one was the addition of burnt lime. On leaf treatment, a plant immunity inducer, Atailing spray, which is a fermented fungal protein product, was used. Besides, there was an integrative treatment including the above additions both in soil and on leaf. The control treatments had no addition. The growth of infected citrus plants was significantly improved by these treatments. We sampled soil under crown circumference, rhizosphere soil and roots, stems and leaves of the citrus trees. Sequencing of the 16S rDNA marker using Illumina methods was applied to determine the bacterial community composition of the samples. The results showed that in the soil samples under crown circumference, treatments increased the relative abundance of the genera Bradyrhizobium and Norank_f__Acidobacteriaceae__Subgroup_1_ compared with the control. In the rhizosphere soil samples, treatments increased the relative abundance of the genus Burkholderia–Paraburkholderia compared with the control. Atailing spray influenced the relative abundance of the bacterial genus norank_f__Acidobacteriaceae__Subgroup_1_ in the rhizosphere soil, as well as Pseudomonas in citrus leaves. Furthermore, 6 months after the treatments, the relative abundance of Actinobacteria and Bacilli at the class level was significantly increased in citrus plant leaves in the group treated with Atailing spray, biofertilizer and burnt lime. Overall, certain bacteria were stimulated by treatments, and the leaf‐associated bacterial communities had important indicators for the health of the citrus endophytic environment. These results provided a theoretical foundation for the development of biological approaches for huanglongbing treatment.     

Phosphorus availability increases pathobiome abundance and invasion of rhizosphere microbial networks by Ralstonia

Soil disease-suppressiveness depends on complex interactions among pathogens, native microbiota, and physicochemical properties, while these interactions remain understudied. Comparing field and microcosm experiments, we investigated the significance of these interactions in disease emergence or suppression using structural equation modelling (SEM) and receiver operating characteristic curve (ROC) analyses. We observed significant differences in the relative abundance of pathogenic and beneficial microbes, alpha and beta diversity indices between disease-conducive and -suppressive rhizosphere soils. The pathogenic (Ralstonia) and beneficial (Bacillus) taxa dominated disease-conducive and -suppressive rhizosphere soils, respectively. Moreover, the co-occurrences of Ralstonia with native microorganisms were positive and negative in the disease-conducive and -suppressive soils, respectively. These results suggest the supportive (Rudaea) and suppressive (Enterobacter, Bacillus) role of indigenous microbes in the invasion of soil and plant systems by Ralstonia. The SEM and ROC analysis predicted that Ralstonia invaded rhizospheric microbial networks and caused peanut wilt under high than low soil phosphorus conditions. Our results suggest the importance of soil phosphorus availability in altering the microbial interactions, thus leading to soil invasion by Ralstonia. Thus, we conclude by saying that feeding soil with high amounts of available phosphorus could deplete plant-beneficial microbes and increase the pathobiome abundance that may compromise plant health.     

土壤理化性质驱动烤烟根际细菌群落的组配及其共现性网络互作

【目的】解析土壤微生物在植物根际的组配机制对于认识和维护农田生态系统的稳定性至关重要。【方法】通过Illumina高通量测序和生物信息学分析方法明确了我国主要种植烟草生态区烤烟根际土壤细菌群落与土壤理化性质的互作关系。【结果】烤烟根际细菌类群主要为放线菌纲(Actinobacteria)、α-变形菌纲(Alphaproteobacteria)、γ-变形菌纲(Gammaproteobacteria)和嗜热油菌纲(Thermoleophilia)。细菌群落组成按生态区聚类,且样本空间距离和细菌群落相似度显著负相关。共现性网络分析表明,烤烟根际细菌群落间协同作用大于拮抗作用,武陵秦巴生态区、黄淮平原生态区、南岭丘陵生态区和沂蒙丘陵生态区细菌群落高度模块化,小单胞菌属(Micromonospora)为南岭丘陵生态区和黄淮生态区细菌共现性网络的网络中心,Bryobacter和气单胞菌属(Arenimonas)为南岭丘陵生态区细菌网络的模块核心,其菌群特性而非相对丰度决定了其在稳定细菌网络中的重要作用。冗余分析结果证实pH、有效铁、交换性镁和有效锰能显著影响烤烟根际细菌群落结构。【结论】烤烟根际细...     

甘肃典型高寒草原退化植物瑞香狼毒对根际土壤微生物群落的影响研究

[目的] 瑞香狼毒（Stellera chamaejasme L.）为瑞香科狼毒属（Stellera）多年生草本植物,是我国草地退化的标志性植物之一。本研究旨在探究甘肃高寒草原主要毒草瑞香狼毒根际微生物群落结构及其与土壤环境因子和酶活性之间关系,为治理因瑞香狼毒入侵引起的草地退化提供理论依据。[方法] 采用Illumina MiSeq高通量测序技术对甘肃不同地区高寒草原的瑞香狼毒根际土壤微生物组成及多样性进行分析,并进一步分析土壤理化性质和酶活性与微生物群落的相关性。[结果] 不同地区瑞香狼毒根际土壤pH随海拔升高呈现上升趋势,土壤中大量和微量营养元素含量以及土壤酶活性的变化各异。在门水平上,子囊菌门（Ascomycota）、接合菌门（Zygomycota）和担子菌门（Basidiomycota）在根际土壤真菌中占优势地位;放线菌门（Actinobacteria）、变形菌门（Proteobacteria）、酸杆菌门（Acidobacteria）在根际土壤细菌中属于优势类群。海拔2964 m样地的真菌和细菌OTU（operational taxonomic unit）数量和Shannon多样性指数均高于其他4个采样点（海拔2373、2608、2733、3280 m）。RDA（redundancy analysis）分析结果显示,瑞香狼毒根际土壤微生物不同,受土壤环境因子的影响不同;相关系数表明,土壤真菌多样性与土壤钾、磷、铁、钙、钼、海拔、土壤水分、过氧化物酶呈正相关,与土壤温度、多酚氧化酶、脱氢酶、蔗糖酶、碱性磷酸酶呈负相关;土壤细菌与土壤pH、钾、磷、镁、钙、土壤水分呈负相关,与多酚氧化酶、过氧化物酶、脲酶、脱氢酶、蔗糖酶、酸性磷酸酶、碱性磷酸酶呈正相关。[结论] 甘肃省不同地区高寒草原瑞香狼毒根际微生物群落组成和多样性差异明显,土壤理化性质与土壤真菌具有较强的正相关关系,而土壤酶则更多地影响着土壤细菌群落的组成和多样性。     

深松对乌拉尔甘草根际土壤养分以及微生物群落功能多样性的影响

通过大田试验和室内分析相结合,研究了深松对乌拉尔甘草根际土壤养分和微生物群落功能多样性的影响,以期为乌拉尔甘草人工种植地土壤耕作措施优化和土壤环境改良提供依据。结果表明,与未深松(常规耕作)处理相比,深松处理对乌拉尔甘草根际土壤0—20 cm耕层土壤养分含量无显著性影响,可显著提高乌拉尔甘草根际土壤20—40 cm耕层有机质、全氮、全磷和全钾的含量,分别提高了60.8%、65.3%、48.9%和86.8%;明显增加了0—20 cm和20—40 cm耕层细菌、真菌和放线菌的数量(P0.05),3种类型的微生物数量均呈现出上层大于下层,深松大于未深松的变化趋势。在156 h的微生物温育期内,深松处理下不同土层的平均颜色变化率(AWCD)均显著高于未深松处理,并显著提高了AWCD的利用率(72 h,P0.05),较未深松分别提高了35.5%和130.8%。与未深松处理相比,深松处理显著提高了土壤微生物的多样性指数(H、S、D)。主成分分析(PCA)表明,深松优化了乌拉尔甘草根际土壤微生物的群落组成;聚合物、羧酸类化合物、氨基酸和碳水化合物是深松处理下根际土壤微生物利用的主要碳源。总而言之,深松处理显著提高乌拉尔甘草根际土壤养分含量、微生物数量和微生物多样性指数,改变了微生物群落功能多样性,造成这种差异的主要原因可能是深松改变了土壤耕层结构,改善了微生物的生存环境。因此,深松对乌拉尔甘草人工种植地土壤质量的改良有积极作用。     

Bacterial diversity in the rhizosphere of maize and the surrounding carbonate‐rich bulk soil

Maize represents one of the main cultivar for food and energy and crop yields are influenced by soil physicochemical and climatic conditions. To study how maize plants influence soil microbes we have examined microbial communities that colonize maize plants grown in carbonate‐rich soil (pH 8.5) using culture‐independent, PCR‐based methods. We observed a low proportion of unclassified bacteria in this soil whether it was planted or unplanted. Our results indicate that a higher complexity of the bacterial community is present in bulk soil with microbes from nine phyla, while in the rhizosphere microbes from only six phyla were found. The predominant microbes in bulk soil were bacteria of the phyla Acidobacteria, Bacteroidetes and Proteobacteria, while Gammaproteobacteria of the genera Pseudomonas and Lysobacter were the predominant in the rhizosphere. As Gammaproteobacteria respond chemotactically to exudates and are efficient in the utilization of plants exudate products, microbial communities associated to the rhizosphere seem to be plant‐driven. It should be noted that Gammaproteobacteria made available inorganic nutrients to the plants favouring plant growth and then the benefit of the interaction is common.     

Temporal dynamics and genetic diversity of chemotactic‐competent microbial populations in the rhizosphere

The contribution of chemotaxis to the competitive colonization of the rhizosphere for the vast majority of the soil community is unknown. We have developed and applied a molecular diagnostic tool, based on a gene encoding the central regulator of bacterial chemotaxis (cheA), to characterize and temporally track specific populations of native microbes with chemotaxis potential that are present in soil exposed to two rhizospheres: wheat and cowpea. The data show that the chemotactic‐competent communities present in the rhizospheres of the two plants are distinct and less diverse than the bulk soil, indicating the development of unique microbial communities. Consistent with the supposition that selection and recruitment of specific soil microbes takes place in the rhizosphere, the dynamics of specific cheA phylotypes provides support for the hypothesis that chemotaxis provides a competitive advantage to some soil microbes. This is the first study to examine and profile the genetic diversity of chemotaxis genes in natural populations. As such, it illustrates our limited understanding of microbial chemotaxis for the majority of soil microbes. It also highlights the value of a culture‐independent approach for examining chemotaxis populations in order to build empirical lines of evidence for its role in structuring of microbial assemblages.