Actinomycete complexes in the rhizosphere of winter rye on soddy podzolic soil

The structure of actinomycete complexes in the rhizosphere of winter rye (Secale cereale L.) varieties originating from different ecosystems and geographical zones was studied in field experiments on soddy podzolic soil. In addition to streptomycetes, the complexes studied contained actinomycetes of the genera Micromonospora and Streptosporangium, represented at high occurrence and comparable abundance rates. The rhizosphere of most of the studied rye varieties was dominated by micromonosporas. The antifungal potential of mycelial prokaryotes associated with winter rye was assessed. The taxonomic and functional structure of actinomycete complexes was shown to be similar in rye varieties originating from the nonchernozem zone of Russia. However, the actinomycete complex proved to be much different in the rye variety that developed in the steppe zone of the lower Volga region.__________Translated from Mikrobiologiya, Vol. 74, No. 2, 2005, pp. 271–277.Original Russian Text Copyright © 2005 by Shirokikh, Merzaeva.     

Actinomycete complexes in the rhizosphere of winter rye on soddy podzolic soil

The structure of actinomycete complexes in the rhizosphere of winter rye (Secale cereale L.) varieties originating from different ecosystems and geographical zones was studied in field experiments on soddy podzolic soil. In addition to streptomycetes, the complexes studied contained actinomycetes of the genera Micromonospora and Streptosporangium, represented at high occurrence and comparable abundance rates. The rhizosphere of most of the studied rye varieties was dominated by micromonosporas. The antifungal potential of mycelial prokaryotes associated with winter rye was assessed. The taxonomic and functional structure of actinomycete complexes was shown to be similar in rye varieties originating from the nonchernozem zone of Russia. However, the actinomycete complex proved to be much different in the rye variety that developed in the steppe zone of the lower Volga region.     

Variety-specific actinomycete complexes associated with barley roots in soddy podzolic soil

The root-colonizing actinomycete complexes of genotypically different barley plants grown in soddy podzolic soil were found to contain streptomycetes of the sections Cinereus (series Chromogenes, Achromogenes, and Aureus) and Roseus (series Fradiae), dominant being streptomycetes of the section Cinereus ser. Chromogenes. The abundance and diversity of soil streptomycetes in the barley rhizoplane increased in the order: var. 999-93 < var. Kumir < var. Novichok < var. 889-93. Experiments revealed functional specificity in the root-associated actinomycete complexes of different barley varieties. The actinomycete complex colonizing the barley var. 999-93 roots was distinguished by a wide range of utilizable root exudate metabolites and a low occurrence rate of antagonistic species.     

Taxonomy of denitrifying bacteria in soddy podzolic soil

The taxonomic composition of denitrifying bacteria in soddy podzolic soil was studied by the succession analysis method. This method revealed a significant variation in the taxonomic composition of denitrifying microorganisms in the course of succession. In contrast to succession analysis, the single microbiological analysis of soil samples reflected only the late stage of succession and thus led to an underestimation of the major members of succession. Myxobacteria were found to be the most active denitrifiers at the early stages of succession, whereas bacilli dominated at its late stages. The bacilli were represented by three facultatively anaerobic species, Bacillus cereus, Bac. circulans, and Bac. polymyxa.     

Taxonomic composition of denitrifying bacteria in soddy podzolic soil

The taxonomic composition of denitrifying bacteria in soddy podzolic soil was studied by the succession analysis method. This method revealed a significant variation in the taxonomic composition of denitrifying microorganisms in the course of succession. In contrast to succession analysis, the single microbiological analysis of soil samples reflected only the late stage of succession and thus led to an underestimation of the major members of succession. Myxobacteria were found to be the most active denitrifiers at the early stages of succession, whereas bacilli dominated at its late stages. The bacilli were represented by three facultatively anaerobic species:Bacillus cereus, Bac. circulons, andBac. polymyxa.     

Mobilization of aluminium in the rhizosphere soil solution of growing tree roots in an acidic soil

Chemical conditions in the rhizosphere in many respects are different from the bulk soil. Especially in acid forest soils aluminium chemistry at the soil root interface is of particular interest because of its importance for evaluating the risk of rhizotoxicity. In the present study we have used micro suction cups to collect soil solution from the rhizosphere of oak seedlings (Quercus robur L.) in high spatial resolution and capillary electrophoresis for the determination of major ions and Al³⁺. While the concentrations of nutrient cations, especially Ca²⁺ and Mg²⁺, decreased in the vicinity of growing roots the concentrations of Al³⁺ significantly increased. Al³⁺-ions were probably released when root-exuded protons were buffered by the soil. Their occurrence indicates, that the oak roots in our experiments had only limited capabilities to detoxify Al in their rhizosphere. The restriction of this effect to the very small soil compartment close to the roots suggests, that common soil analysis which neglect rhizosphere processes might greatly underestimate the in situ concentration of Al³⁺ near tree roots. Our experiments furthermore indicate, that also suberized roots have a significant influence on rhizosphere soil solution chemistry. This revised version was published online in June 2006 with corrections to the Cover Date.     

黑龙江省药用植物根际土壤真菌多样性

为了解黑龙江省药用植物根际土壤真菌的种群结构和区系分布特点,于2010年7月份和10月份,在黑龙江省的伊春、铁力、绥化、哈尔滨、牡丹江和佳木斯6个中药材产区共采集土壤样品220份,所采集的药用植物种类主要有五味子、平贝母、刺五加、党参、防风、柴胡、桔梗、黄芩等14种.经稀释平板法和土壤颗粒平板法分离共获得1016株真菌,经形态鉴定归为35属86种,其中接合菌7属10种,占7.78％;子囊菌1属2种,占0.69％;无性型真菌27属74种,占70.76％,其余20.77％的菌株为不产孢真菌.试验结果表明,黑龙江省药用植物根际土壤真菌的种群多样性丰富,其中青霉属Penicillium、曲霉属Aspergillus、木霉属Trichoderma、镰孢菌属Fusarium是优势种群,粘帚霉属Gliocladium、金孢属Chrysosporium、毛霉属Mucor、枝孢属Cladosporium、枝顶孢属Acremonium、根霉属Rhizopus是亚优势种群.不同药用植物根际土壤真菌区系的结构和组成存在一定的差异.除无孢类群外,青霉属Penicillium、曲霉属Aspergillus、木霉属Trichoderma和镰孢菌属Fusarium是14种药用植物根际土壤真菌的优势菌群.五味子、平贝母和柴胡是黑龙江省种植的主要中药材,它们在6个采样地点间的真菌种群的多样性水平存在差异,其中伊春地区的多样性指数(H’=2.9574)和丰富度指数(R=5.6683)最高,而佳木斯地区的均匀度指数(J=0.9200)最高.不同地区的相似性水平也存在差异,其中牡丹江与绥化的药用植物根际土壤真菌种群组成之间的相似性系数最高(Cj=0.6315),牡丹江与哈尔滨的相似性最低(Cj=0.3704).     

辽宁地区药用植物根际土壤真菌多样性的研究

作者于2007和2008年的5-10月间在辽宁省的丹东、凤城、清原、桓仁等药材产区采集土壤样品200余份,通过采用稀释平板法和土壤颗粒平板法进行土壤真菌的分离和培养,共分离和鉴定出27属54种真菌,其中接合菌2属3种、子囊菌1属1种、无性型真菌24属50种。分离到的部分真菌种类是重要的药用植物病原菌,如Cylindrocarpon destructans、Fusarium oxysporum和F.solani。研究发现,Penicillium paxilli、P.expansum、Trichoderma atroviride及T.viride的分离频率最高,是辽宁省4个调查地区药用植物根际土壤真菌的优势菌群。     

Diversity and metabolic potential of culturable bacteria from the rhizosphere of Turkish tea grown in acidic soils

The purpose of this study was to investigate the diversity of cultivable phosphate solubilising (PSB) and total bacteria originated from 384 rhizospheric acidic soils samples of tea plants grown at 32 locations. Over 900 rhizoplane bacteria were randomly selected from agar-solidified trypticase soy broth, and identified using fatty acid methyl ester (FAME) profiles. Based on FAME profiles, 53 bacterial genera were identified with a similarity index >0.3, but 60.3% of the identified isolates belonged to five genera: Bacillus (34.6%), Pseudomonas (8.9%), Stenotrophomonas (6.1%), Paenibacillus (5.9%) and Arthrobacter (4.8%). The bacilli group comprised many different species, with the most abundant being B. cereus, B. megaterium and B. sphaericus. The main identified Pseudomonads included P. fluorescens, P. putida, and P. alcaligenes. About 30.4% of the bacterial isolates could not be classified to genus since their similarity indices were <0.3 indicating no close matches. Most of the total and P-solubilizing bacteria isolated were Gram positive (61.3 and 52.3%), and Gram negative constituted only 38.7 and 47.7%. Out of the 214 PSB from a pool of 506 bacterial isolates recovered on the selective media from the rhizosphere of tea, 74 of them were characterized by carbon sources using BIOLOG^M GN2 and GP2 plates. Bacillus, Pseudomonas, Paenibacillus and Stenotrophomonas genera were the most prominent P-solubilizing groups in the rhizosphere and soil populations analyzed. B. cereus, P. fluorescens, S. maltophilia, B. megaterium, P. putida, B. sphaericus and Paenibacillus polymyxa were the most frequent P-solubilizing species in the acidic tea rhizosohere soils. Selected Gram-positive PSB appeared to favour carbohydrates, and Gram-negative bacteria appeared to favour carboxylic acids, amino acids and carbohydrates as carbon sources. Selected phosphate solubilizing acid tolerant strains showed high variability in utilizing various carbon sources.     

不同耐盐植物根际土壤盐分的动态变化

以甘肃秦王川引大灌区盐渍化土壤为研究背景,用盆栽根袋法对4种耐盐植物根际和非根际土壤pH和盐分离子的动态变化进行了分析比较。结果表明:4种待测植物随着培养时间的延长土壤pH和EC值呈降低趋势。新疆大叶(Medicago Sativa L.cv.Xinjiangdaye)、向日葵(Helianthus annuus)和霸王(Zygophyllum xanthoxylum)生长90 d后根际土壤pH明显低于非根际,而裸麦(Hordeum vulgare var. vulgare)根际较非根际pH差异不大。霸王和新疆大叶根际土壤EC值较非根际高,而裸麦和向日葵的根际与非根际差异不大。4种供试植物根际K⁺均出现亏缺,Ca²⁺、Na⁺、Mg²⁺、SO^2-₄和Cl^-在新疆大叶、霸王和向日葵3种植物根际均出现富集,对于裸麦:Ca²⁺、Mg²⁺和SO^2-₄ 3种离子在植物根际富集,而Cl^-和Na⁺在根际亏缺。随着待测植物培养时间的增加Na⁺/K⁺、Na⁺/Ca²⁺和Na⁺/Mg²⁺ 这3个比值呈降低趋势,说明Na⁺相对于K⁺、Ca²⁺和Mg²⁺的含量降低,生物措施对Na⁺的移除效果较显著。     

不同荒漠植物根际土壤微生物群落结构特征

于2015年7月在甘肃安西极旱荒漠国家级自然保护区采集膜果麻黄(Ephedra przewalskii)、红砂(Reaumuria songarica)、合头草(Sympegma regelii)、泡泡刺(Nitraria sphaerocarpa)和珍珠猪毛菜(Salsola passerina)5种典型荒漠植物根际土壤样品,利用磷脂脂肪酸(PLFA)法结合Sherlock微生物鉴定系统分析了土壤微生物群落结构。结果表明,5种荒漠植物根际土壤微生物磷脂脂肪酸种类和组成差异显著,其中表征革兰氏阳性菌的18:0 iso、16:0 iso和17:1 isoω9c分别为红砂、珍珠猪毛菜特有表征放线菌的18:1ω7c 10-methyl仅在珍珠猪毛菜根际存在。总PLFAs、真菌、放线菌和真菌/细菌在珍珠猪毛菜中显著最高,革兰氏阳性菌、革兰氏阴性菌在膜果麻黄和珍珠猪毛菜根际显著高于其他植物,AM真菌在合头草根际有最高值。结构方程模型分析表明,与植物相比,土壤因子对微生物群落结构影响更为显著,其中易提取球囊霉素对放线菌有显著影响,土壤碱解氮是革兰氏阳性菌和革兰氏阴性菌的主要影响因子。同时,土壤微生物群落结构可用于检测不同荒漠植物根际微环境土壤退化状况。     

青稞根腐病对根际土壤微生物及酶活性的影响

选取甘肃省卓尼县青稞种植区为研究地点,调查青稞根腐病的发病情况,并分别采集其健康植株和发病株根际的土壤,对比分析其土壤微生物生物量(碳、氮、磷)、微生物数量(细菌、真菌、放线菌)以及过氧化氢酶、蔗糖酶、脲酶、碱性磷酸酶、纤维素酶5种酶活性。结果发现,研究区10个采样点均有青稞根腐病的发生,发病率在5%—20%之间,不同地点发病率不同。根腐病的发生,会显著影响青稞根际微生物生物量,导致微生物生物量碳、氮、磷的含量发生变化,其中微生物生物量氮和磷含量整体降低,且不同采样点微生物量不同。土壤微生物数量总体呈现细菌放线菌真菌的趋势,但不同微生物对根腐病发病的响应不同,细菌和放线菌数量因根腐病的发生而减少,真菌的数量则增多;不同采样点土壤微生物数量不相同,细菌和真菌呈现区域性特征,放线菌的数量不呈现地域性。根腐病的发生还造成土壤酶活性的改变,其中蔗糖酶、脲酶、磷酸酶的含量因根腐病的发生而降低,而纤维素酶则升高,过氧化氢酶的变化没有规律。总而言之,根腐病的发生会使青稞根际土壤微生物组成发生改变,碳、氮、磷等物质代谢受到抑制,而能量代谢发生紊乱。因此,研究和防治青稞根腐病就必须重视土壤微生物及土壤酶的作用。     

Oxidation of pipecolic acid in soils and in rhizosphere soil of different plants

Soil respiration was proportional to its total carbon content. Maximum respiratory activity occurred in garden soil, followed in descending order by chernozem soil, brown soil, and sand. The oxidation of pipecolic acid, as studied by the Warburg manometric technique, in different rhizosphere soils from four crops 7, 13 and 20 days after planting as well as from one crop grown in different soils, was consistently in all cases faster than that by the corresponding non-rhizosphere soils. The curves of the rate of oxygen consumption during pipecolic acid oxidation, by garden soil (whether rhizosphere or non-rhizosphere soil) as well as by chernozem rhizosphere soil of different plants at the three stages of plant growth studied contained two peaks (two phases), whereas in non-rhizosphere chernozem soil as well as in brown soil and sand (whether affected or not affected by plant roots) only one peak was attained in the curves of the rate of oxygen uptake. The rapidity with which pipecolic acid was oxidized in the rhizosphere soil differed from plant to plant and at different phases of plant growth, and also with the type of soil used for plant growing. The extent of pipecolic acid oxidation after the first and second (if it occurred) phases did not differ in the different soils, both rhizosphere and non-rhizosphere soil, but the rate of oxygen uptake was higher in rhizosphere than in the corresponding non-rhizosphere soil. During the first phase, oxygen uptake accounted for slightly less than one-third of the total amount of oxygen required for complete oxidation of the added pipecolic acid. About two-thirds of that total amount were taken up during the both phases of oxidation.     

Phytostabilization potential of ornamental plants grown in soil contaminated with cadmium

In a greenhouse experiment, five ornamental plants, Osmanthus fragrans (OF), Ligustrum vicaryi L. (LV), Cinnamomum camphora (CC), Loropetalum chinense var. rubrum (LC), and Euonymus japonicas cv. Aureo-mar (EJ), were studied for the ability to phytostabilization for Cd-contaminated soil. The results showed that these five ornamental plants can grow normally when the soil Cd content is less than 24.6 mg·kg^?1. Cd was mainly deposited in the roots of OF, LV, LC and EJ which have grown in Cd-contaminated soils, and the maximum Cd contents reached 15.76, 19.09, 20.59 and 32.91 mg·kg^?1, respectively. For CC, Cd was mainly distributed in the shoots and the maximum Cd content in stems and leaves were 12.5 and 10.71 mg·kg^?1, however, the total amount of Cd in stems and leaves was similar with the other ornamental plants. The enzymatic activities in Cd-contaminated soil were benefited from the five tested ornamental plants remediation. Soil urease and sucrase activities were improved, while dehydrogenase activity was depressed. Meanwhile, the soil microbial community was slightly influenced when soil Cd content is less than 24.6 mg·kg^?1 under five ornamental plants remediation. The results further suggested that ornamental plants could be promising candidates for phytostabilization of Cd-contaminated soil.     

Nitrogen fixation in the rhizosphere and rhizoplane of barley

Summary Aerobic and anaerobic N₂-fixing bacteria developed in the rhizosphere of barley seedlings and exhibited N₂ase activity when seedlings were grown in sterilized sand-nutrient cultures containing low levels of combined nitrogen. The source of the N₂-fixing bacteria appeared to be the seed. Average daily rates up to 0.9 μmoles C₂H₄ h⁻¹ g⁻¹ dry root tissue were measured, but the intensity of the activity was affected by moisture levels and concentration of combined N in the rhizosphere. Removal and washing of the roots did not remove the activity, and roots remained active even after surface-sterilization. An unidentified aerobic N₂-fixing bacterium was isolated from the rhizoplane of active barley roots. Inoculation of barley seedlings with the aerobic N₂-fixing bacterium enhanced N₂ase activity of excised roots 10-fold, with average rates of 0.9, 1.1 and 1.3 μmoles h⁻¹ g⁻¹ dry root assayed under pO₂ of 0.01, 0.02 and 0.04 atm respectively. The aerobic N₂-fixing bacterium also exhibited N₂ase activity when inoculated into the rhizosphere of oat, rice and wheat seedlings. Microscopic observations of sterilized live and stained barley roots suggest that the aerobic N₂-fixing bacterium is an endophyte which infects root tissue and metamorphoses into vesicle-like structures.