Cell membrane fluidity related to electroporation and resealing

In this paper, we report the results of a systematic attempt to relate the intrinsic plasma membrane fluidity of three different cell lines to their electroporation behaviour, which consists of reversible and irreversible electroporation. Apart from electroporation behaviour of given cell lines the time course required for membrane resealing was determined in order to distinguish the effect of resealing time from the cell’s ability to survive given electric pulse parameters. Reversible, irreversible electroporation and membrane resealing were then related to cell membrane fluidity as determined by electron paramagnetic resonance spectroscopy and computer characterization of membrane domains. We found that cell membrane fluidity does not have significant effect on reversible electroporation although there is a tendency for the voltage required for reversible electroporation to increase with increased membrane fluidity. Cell membrane fluidity, however, may affect irreversible electroporation. Nevertheless, this effect, if present, is masked with different time courses of membrane resealing found for the different cell lines studied. The time course of cell membrane resealing itself could be related to the cell’s ability to survive.     

Ionic concentration profiles and charge distribution for the domain of a polarized spherical cell

Solutions of the Poisson-Boltzmann equation yield potential profiles and equilibrium distributions of ions on either side of a spherical shell membrane across which there exists a separation of ionic charges. For the special case in which the membrane is permeable to only one ion the total charge separation is analyzed in terms of the potential difference given by the Nernst equation. Potential profiles and ionic charge distributions are also given for situations involving a uniform distribution of fixed charges within the membrane.     

Shapes of bilayer vesicles with membrane embedded molecules

The interdependence of the lateral distribution of molecules which are embedded in a membrane (such as integral membrane proteins) and the shape of a cell with no internal structure (such as phospholipid vesicles or mammalian erythrocytes) has been studied. The coupling of the lateral distribution of the molecules and the cell shape is introduced by considering that the energy of the membrane embedded molecule at a given site of the membrane depends on the curvature of the membrane at that site. Direct interactions between embedded molecules are not considered. A simple expression for the interaction of the membrane embedded molecule with the local membrane curvature is proposed. Starting from this interaction, the consistently related expressions for the free energy and for the distribution function of the embedded molecules are derived. The equilibrium cell shape and the corresponding lateral distribution of the membrane embedded molecules are determined by minimization of the membrane free energy which includes the free energy of the membrane embedded molecules and the membrane elastic energy. The resulting inhomogeneous distribution of the membrane embedded molecules affects the cell shape in a nontrivial manner. In particular, it is shown that the shape corresponding to the absolute energy minimum at given cell volume and membrane area may be elliptically non-axisymmetric, in contrast to the case of a laterally homogeneous membrane where it is axisymmetric.     

Semiconductor theory of ion transport in thin lipid membranes: I. Potential and field distributions

In the theory as presented in this paper and the following one, we shall attempt to apply the semiconductor principles and methods to the study of ion transport in thin lipid membranes. Detailed formulations are given on the potential energy barriers at the interfaces, voltage drops in the polar and non-polar regions, and potential and field distributions in the diffuse double layer and within a charged membrane. These results will be used mainly as the boundary conditions for the solution of ion flow as to be given in the following paper. The analysis clearly indicates that the ion transport is interface-limited and is profoundly influenced by the presence of surface charges. An explanation of Na⁺ extrusion in nerve membrane is given based on the field distribution analysis. The theory also suggests that the “membrane potential” depends mainly on surface charges but not necessarily on ion permeation through the membrane.     

What we can learn from the effects of thiol reagents on transport proteins.

Many secondary membrane transport systems contain reactive sulfhydryl groups. In this review the applications of SH reagents for analyzing the role of sulfhydryl groups in membrane transport systems will be discussed. First an overview will be given of the more important reagents, that have been used to study SH-groups in membrane transport systems, and examples will be given of transport proteins in which the role of cysteines have been analyzed. An important application of SH-reagents to label transport proteins using various SH-reagents modified with fluorescent- or spin-label moieties will be discussed. Two general models are shown which have been proposed to explain the role of sulfhydryl groups in some membrane transport systems.     

Polarizability of the ionic cloud around a charged membrane sheet

The polarizability of the ionic cloud around a charged membrane sheet parallel to the surface is calculated. The membrane is modeled as an infinitely thin and long strip of width 2d'. The Poisson-Boltzmann equation is solved with an external electric field as a perturbation. The polarizability is given in closed integral form, with numerical results. At higher salt concentration the polarizability varies approximately as kappa(-3), where kappa is the Debye-Hückel constant. The given theoretical result can account for the a.c. electrodichroism of purple membrane suspensions.     

The unidirectional flux transient as a tool for quantifying parallel diffusional pathways through membranes. Exact solution for two pathways

If a plane membrane consists of patches, each with a given area and a given diffusion coefficient, then the transient of the total unidirectional flux of a diffusing substance (as defined experimentally by Ussing) is predictable. Here the inverse problem is studied: given only the observed transient of the total unidirectional diffusion flux, the unknown membrane heterogeneity transverse to the flux is to be quantified. The ratio of the arithmetic and of the harmonic means (both area-weighted) of the diffusion coefficients, evaluated over the membrane, is expressed in terms of the observed transient alone and is used to characterize the heterogeneity. A unique exact solution of the inverse problem for two kinds of patches is obtained in closed form. A singular limit of this solution pertains to currently postulated models of endothelial membranes, for which a characteristically shaped transient is predicted.     

Potential regulation of ADP-ribosylation factor 6 signalling by phosphatidylinositol 3,4,5-trisphosphate

In this review we have described data supporting the conclusion that PtdIns(3,4,5)P3 may regulate the activation state of ARF6 through an ability to recruit the ARF exchange factors ARNO, GRP1 and cytohesin-1 to the plasma membrane. The downstream consequences of such a PtdIns(3,4,5)P3-dependent activation of ARF6 are presently unclear. However, given the role of ARF6 in fusion events at the plasma membrane, we have proposed that PtdIns(3,4,5)P3 may regulate vesicle trafficking at this membrane through its ability to activate ARF6. This is an attractive possibility given the number of PtdIns(3,4,5)P3-dependent pathways which involve some aspect of vesicle trafficking at the plasma membrane, for instance glucose transport, membrane ruffling and cell movement.     

Hydrodynamics of a permeable patch in the fluid membrane.

A patch of cross-linked proteins in the fluid membrane is considered for the case in which the patch is permeable (porous) for the lipid flow in the membrane. The Bretscher flow field is studied quantitatively and the distribution of Brownian particles over the surface of the cell is given. This leads to a simple quantitative criterion for cap formation. Finally, explicit expressions for the rotational and translational diffusion coefficients of a permeable patch, as calculated from hydrodynamics, are given.     

The water permeability of basement membrane under increasing pressure: evidence for a new theory of permeability

The water permeability and physical characteristics of the basement membrane (lens capsule) of the crystalline lens of the adult rat have been investigated. The hydraulic conductivity of the basement membrane at low pressure is 50 +/- 9.5 X 10(-12) m s-1 Pa-1 and at high pressure 17 +/- 7.5 X 10(-12) m s-1 Pa-1. This decrease in permeability occurs despite a 75% increase in area of the membrane and a 65% reduction in its thickness. Conventional theories of a membrane possessing pores or of a fibre matrix of filaments of a constant diameter fail to explain the decreasing permeability of the membrane with increasing hydrostatic pressure. The present data suggest that the structure of the membrane is changed by pressure and the coiled filaments of which it is composed are extended as stress is applied to the membrane. If allowance is made both for thinning and for compaction of the membrane and the extension of its area the permeability of the membrane can be predicted satisfactorily at varying pressures. Thus the hydraulic conductivity of basement membrane at a given pressure can be adequately described by the product of a constant and a dimensionless 'deformation coefficient'. This deformation coefficient is equal to the square of the product of the thickness ratio and elongation ratio of the membrane at the given filtration pressure.     

植物膜蛋白质组学研究技术现状

植物膜蛋白质组学是当前植物科学研究的热点领域。本文概论了蛋白质组学在植物膜蛋白研究中的应用,包括双向电泳前膜蛋白样品的制备以及植物质膜、液泡膜和其他膜蛋白组分的蛋白质组学研究进展,并介绍了植物膜蛋白质组学相关的数据库,最后对其发展作了展望。     

Membrane contact probability: An essential and predictive character for the structural and functional studies of membrane proteins

One of the unique traits of membrane proteins is that a significant fraction of their hydrophobic amino acids is exposed to the hydrophobic core of lipid bilayers rather than being embedded in the protein interior, which is often not explicitly considered in the protein structure and function predictions. Here, we propose a characteristic and predictive quantity, the membrane contact probability (MCP), to describe the likelihood of the amino acids of a given sequence being in direct contact with the acyl chains of lipid molecules. We show that MCP is complementary to solvent accessibility in characterizing the outer surface of membrane proteins, and it can be predicted for any given sequence with a machine learning-based method by utilizing a training dataset extracted from MemProtMD, a database generated from molecular dynamics simulations for the membrane proteins with a known structure. As the first of many potential applications, we demonstrate that MCP can be used to systematically improve the prediction precision of the protein contact maps and structures.     

A Multilabel Model Based on Chou’s Pseudo–Amino Acid Composition for Identifying Membrane Proteins with Both Single and Multiple Functional Types

Predicting membrane protein type is a meaningful task because this kind of information is very useful to explain the function of membrane proteins. Due to the explosion of new protein sequences discovered, it is highly desired to develop efficient computation tools for quickly and accurately predicting the membrane type for a given protein sequence. Even though several membrane predictors have been developed, they can only deal with the membrane proteins which belong to the single membrane type. The fact is that there are membrane proteins belonging to two or more than two types. To solve this problem, a system for predicting membrane protein sequences with single or multiple types is proposed. Pseudo–amino acid composition, which has proven to be a very efficient tool in representing protein sequences, and a multilabel KNN algorithm are used to compose this prediction engine. The results of this initial study are encouraging.     

Solution NMR studies of peptide-lipid interactions in model membranes

Abstract

Many important processes in life take place in or around the cell membranes. Lipids have different properties regarding their membrane-forming capacities, their mobility, shape, size and surface charge, and all of these factors influence the way that proteins and peptides interact with the membrane. In order for us to correctly understand these interactions, we need to be able to study all aspects of the interplay between lipids and peptides and proteins. Solution-state NMR offers a somewhat unique possibility to investigate structure, dynamics and location of proteins and peptides in bilayers. This review focuses on solution NMR as a tool for investigating peptide-lipid interaction, and special attention is given to the various membrane mimetics that are used to model the membrane. Examples from the field of cell-penetrating peptides and their lipid interactions will be given. The importance of studying lipid and peptide dynamics, which reflect on the effect that peptides have on bilayers, is highlighted, and in this respect, also the need for realistic membrane models.     

Solution NMR studies of peptide-lipid interactions in model membranes

Many important processes in life take place in or around the cell membranes. Lipids have different properties regarding their membrane-forming capacities, their mobility, shape, size and surface charge, and all of these factors influence the way that proteins and peptides interact with the membrane. In order for us to correctly understand these interactions, we need to be able to study all aspects of the interplay between lipids and peptides and proteins. Solution-state NMR offers a somewhat unique possibility to investigate structure, dynamics and location of proteins and peptides in bilayers. This review focuses on solution NMR as a tool for investigating peptide-lipid interaction, and special attention is given to the various membrane mimetics that are used to model the membrane. Examples from the field of cell-penetrating peptides and their lipid interactions will be given. The importance of studying lipid and peptide dynamics, which reflect on the effect that peptides have on bilayers, is highlighted, and in this respect, also the need for realistic membrane models.     

Biotechnological Aspects of Membrane Function

Abstract

An overview is given of the biotechnological utilizability of various features of cell membranes. Techniques are given that describe how to make use of the barrier and transport functions of membranes for biotechnological purposes, ranging from cell permeabilization and construction of immobilized biocatalysts to manipulating excretion and uptake properties of the membranes by various methods. Glucose transporters, iron-transporting membrane systems, and pumps engaged in pleiotropic drug resistance are treated in more detail as particularly biotechnologically important membrane proteins.     

Phase separation in the isolation and purification of membrane proteins

Phase separation is a simple, efficient, and cheap method to purify and concentrate detergent-solubilized membrane proteins. In spite of this, phase separation is not widely used or even known among membrane protein scientists, and ready-to-use protocols are available for only relatively few detergent/membrane protein combinations. Here, we summarize the physical and chemical parameters that influence the phase separation behavior of detergents commonly used for membrane protein studies. Examples for the successful purification of membrane proteins using this method with different classes of detergents are provided. As the choice of the detergent is critical in many downstream applications (e.g., membrane protein crystallization or functional assays), we discuss how new phase separation protocols can be developed for a given detergent buffer system.     

Membranes of the adrenal medulla. Behaviour of insoluble proteins of chromaffin granules on gel electrophoresis

Washed membranes of bovine adrenal chromaffin granules contained most of the cholesterol and phospholipids of the particle and 22% of the total protein. The protein/lipid ratio was about 0.45 (w/w). Dopamine(3,4-dihydroxyphenethylamine)beta-hydroxylase, Mg(2+)-activated nucleoside triphosphatase and cytochrome b-559 activities were present in the membrane. ATP was the best substrate for the nucleoside triphosphatase, whose pH optimum was 6.4, K(m) 7x10(-4)m and V(max.) 1.8mumol/h per mg of protein. Treatment of the membranes with various detergents caused a preferential solubilization of protein compared with lipids. Membranes dissolved in sodium dodecyl sulphate or phenol-acetic acid-urea were subjected to polyacrylamide-gel electrophoresis at alkaline and acid pH respectively. The electrophoretic patterns given by the proteins of the chromaffin granule membrane were distinct from those given by the chromogranins, and from those given by mitochondrial and microsomal membrane proteins.     

Improved membrane protein topology prediction by domain assignments

Topology predictions for integral membrane proteins can be substantially improved if parts of the protein can be constrained to a given in/out location relative to the membrane using experimental data or other information. Here, we have identified a set of 367 domains in the SMART database that, when found in soluble proteins, have compartment-specific localization of a kind relevant for membrane protein topology prediction. Using these domains as prediction constraints, we are able to provide high-quality topology models for 11% of the membrane proteins extracted from 38 eukaryotic genomes. Two-thirds of these proteins are single spanning, a group of proteins for which current topology prediction methods perform particularly poorly.     

灌胃和皮下注射脂肪膜蛋白卵黄抗体对大鼠生长和脂肪沉积的影响

目的：研究脂肪膜卵黄抗体不同处理对大鼠生长和脂肪沉积的影响。方法：选用140 g左右雌性SD大鼠96只,随机分成4组,分别灌胃阴性卵黄和含脂肪细胞膜蛋白抗体的阳性卵黄;皮下注射阴性卵黄和含脂肪细胞膜蛋白抗体的阳性卵黄。灌胃每3 d给予1 ml卵黄,皮下注射连续4 d经背部皮下多点注射1 ml卵黄,1月后同方式加强1次。75 d后屠宰并采集血样测定。结果：阳性卵黄处理后大鼠体重和摄食量无显著差异。灌胃阳性卵黄降低肠系膜脂指数、子宫周脂指数和肾脂肪囊指数（P〈0.05）;降低血清甘油三酯（P〈0.05）,升高血清游离脂肪酸（P〈0.01）;降低血清Leptin、胰岛素和TNF-α水平（P〈0.01或P〈0.05）,但对腓肠肌生长、血清总胆固醇无显著影响。皮下注射阳性卵黄提高腓肠肌指数（P〈0.05）;降低血清甘油三脂（P〈0.01）;降低血清Leptin（P〈0.01）,升高血清TNF-α（P〈0.05）;而对脂肪沉积、血清游离脂肪酸、总胆固醇和胰岛素无显著影响。结论：脂肪细胞膜蛋白卵黄抗体能有效改善机体组成,灌胃的效果优于皮下注射。