中国4种蝗虫不同种群的遗传分化

采用水平淀粉凝胶电泳技术,应用等位酶分析方法对采自我国山西、江苏、河北等地不同蝗区优势蝗虫种类3科4种8个种群的12种酶18个酶位点进行了检测,比较了4种蝗虫种群水平的等位基因频率变化和它们之间的遗传距离。等位基因频率分析表明：中华稻蝗和笨蝗各位点等位基因丰富,而长翅素木蝗和短额负蝗各位点等位基因较少。在所研究的4种蝗虫8个种群中,多态位点百分率普遍较高(P＝53．3％—100．0％),由于杂合子数目较少而使每个位点的平均杂合度观察值偏低(H。＝0．034—0．139)。受迁飞能力、繁殖方式和活动范围的限制,4种蝗虫的平均杂合度观察值表现出一定的差异：笨蝗较高(H。＝0．089—0．139),其次是中华稻蝗(H。＝0．073—0．090),而长翅素木蝗(H。＝0．0488—0．068)和短额负蝗(H。＝0．034—0．050)相对较低。除Adk-1、Ao-1、Idh-1、Ldh-1、Ldh-2和Me-1在部分蝗虫种群符合Hardy-Weinberg平衡外,其余绝大多数位点的基因型频率显著偏离H—W平衡,但短额负蝗的多个位点符合或接近H—W平衡,表明该种蝗虫在自然种群结构方面明显有别于其他种类。从4种蝗虫的F—统计量(Fst)看,笨蝗种群间基因分化程度最高(Fst＝0．32),其次是短额负蝗(Fst＝0．31),而中华稻蝗相对较低(Fsl＝0．20),长翅素木蝗种群间基因分化程度最低(Fsl＝0．18),利用非加权算术平均法(UPGMA)对I值和D值进行聚类,所得聚类树也证实了这种遗传分化差异,上述结果反映了迁飞能力、适应性和环境因子对不同蝗虫遗传分化的影响。Nei的遗传距离(D)和遗传一致度(I)进行的聚类分析基本符合传统形态学、细胞学等研究结果：即同属于斑腿蝗科的中华稻蝗和长翅素木蝗遗传距离最小(D＝0．559),遗传一致度最高(I＝0．576)。在3个科中,癞蝗科和锥头蝗科之间呈现较小的遗传距离(D＝0．776)和较高的遗传一致度(I＝0．776),而这两科与斑腿蝗科之间的遗传距离相对较大(D＝0．908),遗传一致度相对较低(I＝0．406)。等位酶分析能较好地反映蝗虫不同物种的亲缘关系和种内不同种群之间的遗传分化程度。     

Electrophoretic Variants of Intracellular Catalase of Different Candida Species

Intracellular and extracellular catalases of different species of Candida were investigated using different culture media. All the Candida strains produced intracellular catalase, whose enzymatic activity was detected by non-denaturating polyacrylamide gradient (4-30%) gel electrophoresis. The cell extracts presented a major 230 kDa catalase band and in some strains variants of catalase with different molecular weights were detected. Candida catalase activity was not affected by heating at 50 degrees C and incubation with beta-mercaptoethanol, but treatment with sodium dodecyl sulphate inhibited or reduced enzymatic activity. Extracellular enzyme activity was not detected in any of the culture filtrate extracts tested.     

Characterization of Virulence-Related Phenotypes in Candida Species of the CUG Clade

Candida species cause a variety of mucosal and invasive infections and are, collectively, the most important human fungal pathogens in the developed world. The majority of these infections result from a few related species within the “CUG clade,” so named because they use a nonstandard translation for that codon. Some members of the CUG clade, such as Candida albicans, present significant clinical problems, whereas others, such as Candida (Meyerozyma) guilliermondii, are uncommon in patients. The differences in incidence rates are imperfectly correlated with virulence in animal models of infection, but comparative analyses that might provide an explanation for why some species are effective pathogens and others are not have been rare or incomplete. To better understand the phenotypic basis for these differences, we characterized eight CUG clade species—C. albicans, C. dubliniensis, C. tropicalis, C. parapsilosis, Clavispora lusitaniae, M. guilliermondii, Debaryomyces hansenii, and Lodderomyces elongisporus—for host-relevant phenotypes, including nutrient utilization, stress tolerance, morphogenesis, interactions with phagocytes, and biofilm formation. Two species deviated from expectations based on animal studies and human incidence. C. dubliniensis was quite robust, grouping in nearly all assays with the most virulent species, C. albicans and C. tropicalis, whereas C. parapsilosis was substantially less fit than might be expected from its clinical importance. These findings confirm the utility of in vitro measures of virulence and provide insight into the evolution of virulence in the CUG clade.     

不同寄主来源白假丝酵母菌多态性与耐药性分析

为研究白色假丝酵母菌的分子多样性情况,探讨RAPD基因多态性与药物敏感性的关系,在获得病菌分离物的基础上,应用经筛选的10条10 bp随机引物,对18株病菌分离物进行RAPD分析,利用UPGMA对结果进行聚类.RAPD扩增的指纹图谱清晰,带型稳定,多态性丰富,可以作为白假丝酵母菌分型方法,18株不同来源的菌株可大致分为6种亲缘关系.药敏结果显示导致出现耐药的机制可能并不相同.所以利用RAPD标记技术在基因水平上对白色假丝酵母菌进行分子分型和鉴定是可行的.     

Eco-physiological Characterization of Soil Bacterial Populations in Different States of Growth

The method based on characterization of microbial populations in terms of their growth rate in agar plates has been used for testing the prediction of the theory of r- and K-selection in a microbial community from a tropical soil. Conditions which could lead bacterial populations to grow exponentially or to enter into a stationary phase were obtained by growing soil microbial populations in a chemostat and in a chemostat with recycle, respectively. Significant differences in population distribution patterns were observed by comparing results from the two growth systems. When soil community was grown in a chemostat and subjected specifically to well-defined r- and K-conditions, stable associations of organisms with r- and K-type characteristics developed as a consequence of environmental pressure. In contrast, when cultivated in chemostat with recycle under the same r- and K-conditions imposed on chemostat cultures, distribution patterns of r- and K-selected populations appeared very little affected by changes in substrate availability.     

Ultrastructural Characterization of Oil Bodies in Different Coffea Species

In the coffee seed, the lipid component known as coffee oil is stored in the endosperm tissue as an energy reserve for germination and post-germination growth. This coffee constituent is present in the form of subcellular spherical oil bodies (“oleosomes”) in a typical size range of 0.2–2.5 μm. These particles are filled with an osmiophilic matrix of triglycerides, delimited by a single protein membrane, typical of oleaginous plant tissues. The object of this study is to characterize the morphology and distribution of oil bodies in different coffee species. In particular, we studied Indian samples of Coffea arabica, C. canephora, C. liberica, C. stenophylla and C. salvatrix. After appropriate fixation and preparation, the samples were examined and oil bodies characterized by optical microscopy and transmission electron microscopy. Oil bodies morphology, tissue distribution and size distribution were determined and several features of these subcellular structures were observed and discussed for the first time in the framework of a coffee inter-species comparative study.     

Characterization of Heterodera zeae Populations from Portugal

Three populations of the corn cyst nematode Heterodera zeae, one found in the rhizosphere of a fig tree and two infecting corn, were studied using the morphology and morphometry of cysts and second-stage juveniles, and compared with other populations. The intrapopulation and intraspecific variability are discussed. A simple and improved technique to prepare vulval cones for SEM is described. The non-specific esterase patterns of females, isolated from infected corn, were analyzed by electrophoresis in polyacrylamide gels. Two bands of esterase activity were detected. The occurrence of H. zeae is reported for the first time in Portugal and Europe.     

苍术属植物6个居群的染色体核型分析

采用常规根尖压片法对苍术属植物6个居群染色体数目和核型进行分析。结果表明,所研究的苍术属植物居群染色体数目均为24条,核型公式分别为:保康居群2n=2x=10m+12sm+2st、商洛居群2n=2x=14m+10sm、岳西居群2n=2x=12m+12sm、英山居群2n=2x=14m+10sm、信阳居群2n=2x=14m+8sm+2st、神农架居群2n=2x=8m+10sm+4st。除了英山居群苍术核型为2A型外,其他的均为2B型。表明英山苍术是6个居群中比较原始的类群,而其他居群进化程度较高。同时根据6个居群的核型分析和Q型聚类结果可知,英山居群罗田苍术与商洛居群北苍术着丝粒核型相同,聚为一小类,再与信阳居群北苍术聚为一大类,认为将英山居群罗田苍术与其他苍术划分开来作为一个新的变种不合适;保康和岳西居群均为南苍术,聚为另一类,因此本研究结果支持北苍术作为苍术的一个变种,支持罗田苍术与南苍术、北苍术共同构成苍术属的一个分支——苍术复合体。神农架苍术居群单独聚为一大类,与其他居群的苍术亲缘关系较远,可能与其海拔高、生境复杂及与其他居群基因交流有限而导致遗传隔离有关,其他5个居群聚为另一大类,表明其遗传亲缘关系比较近,基因交流比较频繁。     

Antifungal Activities of Different Extracts of Marine Macroalgae Against Dermatophytes and Candida Species

Algae are bioactive natural resources, and due to the medical importance of superficial mycoses, we focused the action of macroalgae extracts against dermatophytes and Candida species. Seaweed obtained from the Riacho Doce beach, Alagoas (Brazil), were screened for the antifungal activity, through crude extracts using dichloromethane, chloroform, methanol, ethanol, water and chloroform and hexane fractions of green, brown and red algae in assays with standard strains of the dermatophytes Trichophyton rubrum, T. tonsurans, T. mentagrophytes, Microsporum canis, M. gypseum and yeasts Candida albicans, C. krusei, C. guilliermondi and C. parapsilosis. The M44-A and M27-A2/M38A manuals by CLSI were followed, and the minimum inhibitory concentration (MIC) ranged from 0.03 to 16.00 μg ml(-1), and an inhibition halo of 10.00-25.00 mm was observed for dermatophytes, while for yeast, it was from 8.00 to 16.00 μg ml(-1) and 10.00-15.00 mm. M. canis showed MIC of 0.03 μg ml(-1) and the largest inhibition halo in T. rubrum (25.00 mm) through the use of the methanol extract. For C. albicans, dichloromethane, methanol and ethanol extracts formed the largest inhibition halo. The ethanol extract was shown to be the best inhibiting fungi growth, and chloroform and hexane fractions of H. musciformis inhibited the growth of all dermatophytes and C. albicans, yielding the conclusion that apolar extracts obtained from algae presented the best activity against important pathogenic fungi.     

Admixture in Humans of Two Divergent Plasmodium knowlesi Populations Associated with Different Macaque Host Species

Human malaria parasite species were originally acquired from other primate hosts and subsequently became endemic, then spread throughout large parts of the world. A major zoonosis is now occurring with Plasmodium knowlesi from macaques in Southeast Asia, with a recent acceleration in numbers of reported cases particularly in Malaysia. To investigate the parasite population genetics, we developed sensitive and species-specific microsatellite genotyping protocols and applied these to analysis of samples from 10 sites covering a range of >1,600 km within which most cases have occurred. Genotypic analyses of 599 P. knowlesi infections (552 in humans and 47 in wild macaques) at 10 highly polymorphic loci provide radical new insights on the emergence. Parasites from sympatric long-tailed macaques (Macaca fascicularis) and pig-tailed macaques (M. nemestrina) were very highly differentiated (FST = 0.22, and K-means clustering confirmed two host-associated subpopulations). Approximately two thirds of human P. knowlesi infections were of the long-tailed macaque type (Cluster 1), and one third were of the pig-tailed-macaque type (Cluster 2), with relative proportions varying across the different sites. Among the samples from humans, there was significant indication of genetic isolation by geographical distance overall and within Cluster 1 alone. Across the different sites, the level of multi-locus linkage disequilibrium correlated with the degree of local admixture of the two different clusters. The widespread occurrence of both types of P. knowlesi in humans enhances the potential for parasite adaptation in this zoonotic system.     

Characterization of crystalline formate dehydrogenase from Candida methanolica

The crystalline formate dehydrogenase from Candida methanolica, which showed the highest specific activity (7.52 U/mg) so far reported, was characterized in detail. The enzyme is a dimer composed of identical subunits, each containing one SH group related to the catalytic activity. The molecular mass of the enzyme is about 82-86 kDa. The Km values were found to be 3.0 mM for formate and 0.11 mM for NAD+. Even if the enzyme was incubated at pH 6.5-9.5 or at 55 degrees C, the activity remained at 100%. Hg2+, Ni2+, NaCN, NaN3 and p-chloromercuribenzoate strongly inhibited the enzyme activity, while the enzyme showed relatively high resistance to various chelating agents. The amino acid composition and some other physicochemical properties of the enzyme were studied. Immunological studies revealed that formate dehydrogenases of methanol-utilizing yeasts immunologically more or less resemble each other, but differ from those of methanol-utilizing bacteria. Furthermore, yeast formate dehydrogenases can be immunologically classified into three types: (a) the Candida type, (b) the Torulopis/Hansenula/Pichia type and (c) the formaldehyde-resistant yeast type. For simple and large-scale preparation of the enzyme for practical use, treatment of cells of C. methanolica with the commercial cationic detergent, 'Benzalkonium' cation, is useful: the total and specific activities of the enzyme are 1.17-fold and 3.10-fold higher than those of the crude cell-free extract, respectively.     

Fluctuations in Populations of 3 Vorticella Species from an Activated-Sludge Sewage Plant

SYNOPSIS. To evaluate Vorticella populations in an activated sludge sewage-disposal plant as a ) indicators and b ) contributors to purification, population behavior in the plant was compared with behavior in clonaI cultures maintained with mixed sludge microflora. In a 12-month survey of protozoa in the plant, of 37 spp recorded only 9—all ciliates—were indigenous. Ciliate populations fluctuated cyclically. Alternations in dominance of Vorticella convallaria (L.) with V. octava (Stokes) + V. aequitata (Kahl) apparently followed changes in bacterial activity as indicated by changes in reduction of biochemical oxygen demand and suspended solids of the wastes. This correlation of Vorticella and bacterial activities was also investigated with clonal populations of the vorticellas and their accompanying mixed microflora—the bacteria being isolated together with the vorticellas from sludge samples. The mixed microflora which consistently supported healthy vorticellas was predominantly proteolytic. Varying periods of dominance in Vorticella species thus indicated activity of their supporting microflora. Log-phase bacteria activity stimulated V. octava ; stationary and declining phases stimulated V. convallaria. Thus, V. octava appeared predatory and V. convallaria appeared to require bacterial conditioning of the medium. Bacterial activity was stimulated by V. octava predation. Vorticella activity may thus promote purification.     

Karyotypes of 25 Populations of 15 Species in Allium Section Rhiziridium from China

Karyotypes of 25 populations of 15 species in Allium section Rhiziridium from China were analyzed to discuss the evolutionary mechanisms of Allium section Rhiziridium and cytogeography of some species. Root tips for the study of mitotic chromosomes were obtained from potted plants and pretreated with paradichlorobenzene at room temperature for 9 hours. After 12-24 hours fixation in 1∶3 acetic alcohol, the root tips were macerated in 1mol·L-1 HC1 for 9 minutes at 60℃ and then stained and squashed in carbol fuchsin. Karyotype asymmetry was assessed by As.K%. Results showed that taxa investigated were diploid or tetraploid. Furthermore, the karyotype types were 1A, 2A or 2B according to Stebbins’ karyotype classification. Karyotypes of A.tekesicola, A.tianschanicum, A.beesianum and A.spirale were reported for the first time. Combined with previous karyotype studies, we suggested that: (1) The basic chromosome number of Allium section Rhiziridium from China is x=8. (2) The karyotype types evolutionary trend of Allium section Rhiziridium from China is 1A→2A→2B→2C . (3) Satellite chromosomes of Allium section Rhiziridium from China are varied in numbers and shapes. (4) Polyploidy and chromosome structural rearrangement are two important evolution patterns in Allium section Rhiziridium from China. (5) A.cyaneum and A.nu tans have exploited new niches through polyploidy and asexual reproduction.     

中国葱属根茎组植物15种25居群的核型研究

采用常规压片法,对15种25居群葱属根茎组植物进行核型研究,首次报道荒漠韭Allium tekesicola、蓝花韭A.beesianum的染色体数目和核型,并增补了一些根茎组植物的细胞学资料。结果表明：供试类群为二倍体或四倍体,核型类型为1A、2A或2B;高山韭A.sikkimense壤塘居群和荒漠韭具短臂随体,宽苞韭A.platyspathum的和布克赛尔居群、奇台居群具居间随体;野黄韭A.rude雅江居群和荒漠韭中各存在1条B染色体。结合前人研究结果,我们讨论了中国根茎组植物的染色体基数、随体染色体的多型性、B染色体的进化意义和该组植物的进化方式,探讨了天蓝韭A.cyaneum、齿丝山韭A.nutans的地理分布成因,得到了如下推论：（1）中国根茎组植物的染色体基数x=8;（2）中国根茎组植物的核型进化趋势为：1A→2A→2B→2C;（3）中国根茎组植物的随体染色体具多型性;（4）多倍化和结构变异是中国根茎组植物进化的两种重要方式;（5）天蓝韭和齿丝山韭以多倍化和无性生殖来克服扩大新的生存空间遇到的困难。     

伞形科3个种5个居群的核型分析

对伞形科前胡属(PeucedanumL.)2个种以及羌活属(NotopterygiumH.Boiss.)1个种3个居群的染色体数目和核型进行了研究。研究表明,它们的染色体数目均为2n=22,核型公式可分别表示为长前胡:2n=2x=22=22 m(1 SAT),属1A型;松潘前胡:2n=2x=22=20 m 2 sm,属2A型;宽叶羌活的3个居群分别是:马边大风顶居群1为2n=2x=22=6 m 12 sm 4 st,属2A型;马边大风顶居群2为2n=2x=22=12 m 4 sm 6 st,属2B型;屏山老君山居群为2n=2x=22=4 m 14 sm 4 st,属2A型。其中长前胡和松潘前胡的染色体数目和核型为首次报道。     

Microbial Ecophysiology of Whey Biomethanation: Characterization of Bacterial Trophic Populations and Prevalent Species in Continuous Culture

The organization and species composition of bacterial trophic groups associated with lactose biomethanation were investigated in a whey-processing chemostat by enumeration, isolation, and general characterization studies. The bacteria were spatially organized as free-living forms and as self-immobilized forms appearing in flocs. Three dominant bacterial trophic group populations were present (in most probable number per milliliter) whose species numbers varied with the substrate consumed: hydrolytic, 10¹⁰; acetogenic, 10⁷ to 10¹⁰; and methanogenic, 10⁶ to 10⁹. The three prevalent species utilizing lactose were identified as Leuconostoc mesenteroides, Klebsiella oxytoca, and Clostridium butyricum. Clostridium propionicum and Desulfovibrio vulgaris were the dominant lactate-consuming, hydrogen-producing acetogenic bacteria, while D. vulgaris was the only significant ethanol-degrading species. Methanosarcina barkeri and Methanothrix soehngenii were identified as the dominant acetate-utilizing methanogens, and Methanobacterium formicicum was the prevalent hydrogen-utilizing methanogen. A microbial food chain is proposed for lactose biomethanation that comprises multiple species in three different groups, with the major hydrogen-producing acetogen being a sulfate-reducing species, D. vulgaris, which functioned in the absence of significant levels of environmental sulfate.     

DNA Barcoding of Shark Meats Identify Species Composition and CITES-Listed Species from the Markets in Taiwan

Background

An increasing awareness of the vulnerability of sharks to exploitation by shark finning has contributed to a growing concern about an unsustainable shark fishery. Taiwan’s fleet has the 4th largest shark catch in the world, accounting for almost 6% of the global figures. Revealing the diversity of sharks consumed by Taiwanese is important in designing conservation plans. However, fins make up less than 5% of the total body weight of a shark, and their bodies are sold as filets in the market, making it difficult or impossible to identify species using morphological traits.

Methods

In the present study, we adopted a DNA barcoding technique using a 391-bp fragment of the mitochondrial cytochrome oxidase I (COI) gene to examine the diversity of shark filets and fins collected from markets and restaurants island-wide in Taiwan.

Results

Amongst the 548 tissue samples collected and sequenced, 20 major clusters were apparent by phylogenetic analyses, each of them containing individuals belonging to the same species (most with more than 95% bootstrap values), corresponding to 20 species of sharks. Additionally, Alopias pelagicus, Carcharhinus falciformis, Isurus oxyrinchus, and Prionace glauca consisted of 80% of the samples we collected, indicating that these species might be heavily consumed in Taiwan. Approximately 5% of the tissue samples used in this study were identified as species listed in CITES Appendix II, including two species of Sphyrna, C. longimanus and Carcharodon carcharias.

Conclusion

DNA barcoding provides an alternative method for understanding shark species composition when species-specific data is unavailable. Considering the global population decline, stock assessments of Appendix II species and highly consumed species are needed to accomplish the ultimate goal of shark conservation.