The Effect of Aerobic Methylotrophic Bacteria on the in vitro Morphogenesis of Soft Wheat (Triticum aestivum)

The effects of four aerobic methylotrophic bacteria on the morphogenesis of soft wheat (Triticum aestivum) were studied in vitro using immature embryos as explants. The inoculation of the embryos with methylotrophic bacteria led to their stable colonization with the bacteria. The colonization of the explants with the strains of Methylobacterium sp. D10 and Methylophilus glucoseoxidans stimulated the formation of morphogenic calli and shoots and also promoted development of the regenerated plants. These regenerated plants manifested bright green leaves and a well-developed root system. The colonization of immature wheat embryos with methylotrophic bacteria can be employed as a tool for raising the efficiency of genetic transformation of various wheat cultivars.     

Phylogenetic Analysis of Dichloromethane-Utilizing Aerobic Methylotrophic Bacteria

The phylogenetic relationships of 12 aerobic dichloromethane-degrading bacteria that implement different C₁-assimilation pathways was determined based on 16S ribosomal RNA sequences and DNA–DNA hybridization data. The restricted facultative methylotroph Methylophilus leisingerii DM11 with the ribulose monophosphate pathway was found to belong to the genus Methylophilus cluster of the beta subclass of Proteobacteria. The facultative methylotroph Methylorhabdus multivorans DM13 was assigned to a separate branch of the alpha-2 group of Proteobacteria. Paracoccus methylutens DM12, which utilizes C₁-compounds via the Calvin cycle, was found to belong to the alpha-3 group of Proteobacteria (more precisely, to the genus Paracoccus cluster). Thus, phylogenetic analysis confirmed the taxonomic status of these recently characterized bacteria. According to the degree of DNA homology, several novel strains of methylotrophic bacteria were divided into three genotypic groups within the alpha-2 group of the Proteobacteria. Genotypic group 1, comprising strains DM1, DM3, and DM5 through DM9, and genotypic group 3, comprising strain DM10, were phylogenetically close to the methylotrophic bacteria of the genus Methylopila, whereas genotypic group 2 (strain DM4) was close to bacteria of the genus Methylobacterium. The genotypic groups obviously represent distinct taxa of methylotrophic bacteria, whose status should be confirmed by phenotypic analysis.     

甲基营养菌甲醇脱氢酶基因的克隆及表达

目的:从甲基营养菌MP681中扩增甲醇脱氢酶(MDH)基因,在大肠杆菌中表达并检测其活性,同时在MP681中考察该基因对吡咯喹啉醌(PQQ)产生的影响。方法:根据MP681基因组序列设计引物,PCR扩增靶基因mdh,构建表达载体,考察活性,利用接合转移转化至MP681,考察PQQ的合成。结果:扩增得到甲基营养菌MP681甲醇脱氢酶基因,在大肠杆菌中的表达产物能够催化甲醇脱氢;将携带mdh基因的质粒转入MP681后,PQQ产量略有提高。结论:获得编码MDH的基因,该基因能够在大肠杆菌中表达,且表达产物具有生物活性;甲醇脱氢酶基因表达对宿主菌的PQQ合成可能有一定影响。     

甲基营养菌MP681基因组测序文库的构建

目的:建立甲基营养菌MP681基因组文库,用于鸟枪法测序。方法:提取MP681基因组DNA,经超声随机片段化及T4 DNA聚合酶末端修平处理后,与经SmaⅠ酶切、小牛肠碱性磷酸酶(CIP)去磷酸化处理的pUC19载体连接,电击转化大肠杆菌DH5α感受态,并通过末端双向测序对文库质量进行评价。结果:分别构建了2～4 kb和4～6 kb基因组文库,电泳结果显示插入片段长度与预期符合,文库库容均在10万以上。结论:构建了插入片段大小和库容符合要求的甲基营养菌MP681全基因组鸟枪法2～4 kb、4～6 kb测序文库。     

Plant Growth and Morphogenesis in vitroIs Promoted by Associative Methylotrophic Bacteria

The effects of aerobic methylotrophic bacteria Methylovorus mayson growth and morphogenesis were studied in in vitropropagated tobacco, potato, and flax. Colonization of plant explants with the methylo-trophic bacteria led to the stable association of bacteria and plants and enhanced the growth and the capacity of the latter for regeneration and root formation. When colonized by the methylotrophic bacteria, the rootless transgenic tobacco plants carrying the agrobacterial cytokinin gene iptrestored their ability to form roots. These data indicate the possibility to employ methylotrophic bacteria as a tool in experimental biology and plant biotechnology.     

Phylogenetic Diversity of Aerobic Saprotrophic Bacteria Isolated from the Daqing Oil Field

A diverse and active microbial community in the stratal waters of the Daqing oil field (China), which is exploited with the use of water-flooding, was found to contain aerobic chemoheterotrophic bacteria (including hydrocarbon-oxidizing ones) and anaerobic fermentative, sulfate-reducing, and methanogenic bacteria. The aerobic bacteria were most abundant in the near-bottom zones of injection wells. Twenty pure cultures of aerobic saprotrophic bacteria were isolated from the stratal waters. Under laboratory conditions, they grew at temperatures, pH, and salinity values typical of the stratal water from which they were isolated. These isolates were found to be able to utilize crude oil and a wide range of hydrocarbons, fatty acids, and alcohols. Phylogenetic analysis carried out with the use of complete 16S rRNA sequences showed that the isolates could be divided into three major groups: gram-positive bacteria with a high and a low G+C content of DNA and gram-negative bacteria of the -subclass of the Proteobacteria. Gram-positive isolates belonged to the genera Bacillus, Brevibacillus, Rhodococcus, Dietzia, Kocuria, Gordonia, Cellulomonas, and Clavibacter. Gram-negative isolates belonged to the genera Pseudomonas and Acinetobacter. In their 16S rRNA sequences, many isolates were similar to the known microbial species and some probably represented new species.     

Improved in vitro clonal propagation of Rauwolfia serpentina L. Benth – An endangered medicinal plant

In this protocol, 96% of bud proliferation was observed after 14 days of inoculation. Highest rate of shoot multiplication (13.3 shoots per explant) with an average shoot length of 8.2 cm was observed in Murashige and Skoog (MS) medium+2 mg/l 6-benzylaminopurine+0.25 mg/l 1-naphthaleneacetic acid+3% sucrose. Half MS (1/2 MS)+0.5 mg/l indol-3-butyric acid proved best with 73.3% rooting. The rooted shoots showed 90% survival. Genetic uniformity of the micropropagated plants with their donor plants was confirmed through random amplified polymorphic DNA molecular technique.     

Aerobic Methylobacteria Are Capable of Synthesizing Auxins

Obligately and facultatively methylotrophic bacteria with different pathways of C1 metabolism were found to be able to produce auxins, particularly indole-3-acetic acid (IAA), in amounts of 3–100 g/ml. Indole-3-pyruvic acid and indole-3-acetamide were detected only in methylobacteria with the serine pathway of C1 metabolism (Methylobacterium mesophilicumand Aminobacter aminovorans).The production of auxins by methylobacteria was stimulated by the addition of L-tryptophan to the growth medium and was inhibited by ammonium ions. The methylobacteria under study lacked tryptophan decarboxylase and tryptophan side-chain oxidase. At the same time, they were found to contain several aminotransferases. IAA is presumably synthesized by methylobacteria through indole-3-pyruvic acid.     

The Phylogenetic Diversity of Aerobic Organotrophic Bacteria from the Dagang High-Temperature Oil Field

The distribution and species diversity of aerobic organotrophic bacteria in the Dagang high-temperature oil field (China), which is exploited with water-flooding, have been studied. Twenty-two strains of the most characteristic thermophilic and mesophilic aerobic organotrophic bacteria have been isolated from the oil stratum. It has been found that, in a laboratory, the mesophilic and thermophilic isolates grow in the temperature, pH, and salinity ranges characteristic of the injection well near-bottom zones or of the oil stratum, respectively, and assimilate a wide range of hydrocarbons, fatty acids, lower alcohols, and crude oil, thus exhibiting adaptation to the environment. Using comparative phylogenetic 16S rRNA analysis, the taxonomic affiliation of the isolates has been established. The aerobic microbial community includes gram-positive bacteria with a high and low G+C content of DNA, and γ and β subclasses of Proteobacteria. The thermophilic bacteria belong to the genera Geobacillus and Thermoactinomyces, and the mesophilic strains belong to the genera Bacillus, Micrococcus, Cellulomonas, Pseudomonas, and Acinetobacter. The microbial community of the oil stratum is dominated by known species of the genus Geobacillus (G. subterraneus, G. stearothermophilus, and G. thermoglucosidasius) and a novel species “Geobacillus jurassicus.” A number of novel thermophilic oil-oxidizing bacilli have been isolated.__________Translated from Mikrobiologiya, Vol. 74, No. 3, 2005, pp. 401–409.Original Russian Text Copyright © 2005 by Nazina, Sokolova, Shestakova, Grigoryan, Mikhailova, Babich, Lysenko, Tourova, Poltaraus, Qingxian Feng, Fangtian Ni, Belyaev.     

Novel Aerobic Methylotrophic Isolates from the Soda Lakes of the Southern Transbaikal Region

Twenty-one bacterial associations isolated from the soda lakes of the southern Transbaikal region were found to be able to actively grow at pH 9–10 on methanol as the source of carbon and energy. Two alkalitolerant facultatively methylotrophic strains, Bur 3 and Bur 5, were obtained in pure cultures. Both strains represent gram-negative, nonmotile, bean-shaped, encapsulated cells that reproduce by binary fission. The strains are able to grow at temperatures ranging from 6 to 42°C, with an optimum growth temperature of 25–29°C (strain Bur 3) and 35–37°C (strain Bur 5) and at pH between 6.5 and 9.5, with an optimum pH value of 8.0–8.5. At pH 9.0, strain Bur 3 exhibits an increased content of phosphatidylglycerol and a decreased content of phosphatidylethanolamine. Strains Bur 3 and Bur 5 are similar in the G+C content of their DNAs (66.2 and 65.5 mol %, respectively) and in the type of the dominant ubiquinone (Q ₁₀). Unlike Bur 5, strain Bur 3 is able to grow autotrophically in an atmosphere of CO₂+ O₂+ H₂. The strains oxidize, by the respective dehydrogenases, methanol to CO₂, which is assimilated by the ribulose bisphosphate pathway. Ammonium ions are assimilated in the glutamate cycle and by the reductive amination of -ketoglutarate. The strains are highly homologous to each other (92%) and are much less homologous (at a level of 28–35%) to representatives of the genus Ancylobacter, A. aquaticusATCC 25396^Tand A. vacuolatumDSM 1277. Based on the results obtained, both strains are assigned to a new species, Ancylobacter natronumsp. nov.     

细菌好氧反硝化研究进展

阐述了好氧反硝化细菌的种类及有关性质 ,并从电子理论、氧的浓度、反硝化酶系等方面对细菌好氧反硝化的作用机制进行了探讨 ,对细菌好氧反硝化的研究概况、进展及其研究意义和目前存在的问题作了较为详细的介绍。     

Direct shoot organogenesis from needles of three genotypes of <Emphasis Type="Italic">Sequoia sempervirens</Emphasis>

Using in vitro-grown needles of Sequoia sempervirens (D. Don.) Endl., direct shoot organogenesis was induced. The effects of three genotypes and two cytokinins, N⁶-benzyladenine (BA) and N-benzyl-9 (2-tetrahydropyranl) adenine (BPA), in combination with 2,4-D were investigated. Among tested cytokinins, BPA produced the highest frequency of shoot organogenesis from all three genotypes tested. Adventitious shoots were induced directly from explants without intervening callus within 5weeks following incubation. Shoots were elongated on a 1/2 Wolter and Skoog (WS) medium supplemented with activated charcoal but without growth regulators. Later, elongated shoots were transferred to a 1/4 WS medium, but without activated charcoal and free of plant growth regulators to promote continued shoot growth. These shoots rooted spontaneously.     

Growth Performance of Cuttings Raised from in vitro and in vivo Propagated Stock Plants of Rosa damascena Mill.

Comparative studies on rooting and growth performance of cuttings raised from in vitro and in vivo grown plants of Rosa damascena are described. Cuttings were treated with different auxins and upon transfer to soil their growth performance was recorded. Overall, the auxin treated cuttings of in vitro raised plants responded better than the cuttings of in vivo raised plants. Optimal response for percentage of rooting, root number, root length and bottom breaks was observed at 100 mg dm^–3 IBA. The cuttings derived from in vitro raised plants showed a significantly better response for percent rooting, root number, root length and bottom buds in control treatments.     

In vitro regeneration of Trifolium glomeratum

In vitro regeneration of Trifolium glomeratum, a leguminous forage species, was attempted through leaf, petiole, cotyledon, hypocotyl, collar and root explants and two media combinations. Root and collar explants showed no callus induction. Medium with 0.05 mg dm⁻³ α-naphthaleneacetic acid (NAA) and 0.10 mg dm⁻³ N⁶-benzyladenine (BA) was more effective for hypocotyl explant whereas cotyledon and petiole explant were more responsive to 5.0 mg dm⁻³ NAA and 1.0 mg dm⁻³ BA. Friable, green calli obtained from petiole explant on this medium showed organogenetic potential. Modified root-inducing medium having 0.21 mg dm⁻³ indole-3-acetic acid and 2.5 % sucrose was successful for root induction and plantlets were successfully transferred to field after hardening and Rhizobium inoculation.     

Role of auxins and cytokinins in the development of lateral roots in wheat plants with several roots removed

The removal of four of five roots of 7–8-day-old wheat plants resulted in the activation of lateral root growth and the initiation of lateral root primordia on the remained root as compared to the main root of intact plants. The extent of this growth response depended on placing cut surface above or beneath the surface of the nutrient solution. The measurement of the IAA and cytokinin contents showed accumulation of these hormones in the root of experimental plants as compared to the main root of intact plants. IAA accumulation was correlated with the number of lateral roots and their primordia. The analysis of hormonal balance and their transport from the shoot to the root permits discussing the involvement of these hormones and their interaction in the control of root growth at the stages of both primordium initiation and development and lateral root elongation.     

Aerobic Phototrophic Bacteria: New Evidence for the Diversity,Ecological Importance and Applied Potential of this Previously Overlooked Group

The aerobic phototrophic bacteria are a recently discovered group capable of producing a photosynthetic apparatus similar to that of purple phototrophic bacteria. However, this apparatus, in contrast to that of their anaerobic counterparts, is functional in terms of photoinduced electron transport only under aerobic conditions. Although these bacteria have been widely studied, little is yet known about their ecological importance, and why they differ from other anoxygenic phototrophs with respect to oxygen requirements. In recent years a large number of new genera and species have been described from a wide variety of habitats, and evidence has been presented to support their important ecological role. This minireview focuses on recent discoveries regarding taxonomy, ecology and physiology, as well as the latest advances in the understanding of their photosynthetic apparatus and its genetic regulation.This revised version was published online in October 2005 with corrections to the Cover Date.     

Effect of changing the endogenous concentration of auxins and cytokinins and the production of ethylene in pea stem cuttings on adventitious root formation

Decapitation or treatment with naphthylphthalamic acid (NPA) ndash; an inhibitor of IAA transport ndash; or a synthetic cytokinin N-(2-chloro-4-pyridyl)-N-phenylurea (CPPU) caused a decrease in rooting of pea cuttings. However the mode of action of the above treatments was different. Decapitation resulted in a decrease of indole-3-acetic acid (IAA) and a simultaneous increase in cytokinin content at the base of the cuttings. NPA decreased IAA even more, but did not influence cytokinins. CPPU alone or in combination with amino-ethoxy-vinylglycine (AVG) ndash; an ethylene biosynthesis inhibitor ndash; increased IAA at the rooting zone, but CPPU was transported from apex to the base of the cuttings where it inhibited rooting. NAA, applied alone after decapitation, stimulated rooting, probably partly by being an auxin, and partly by inhibiting the accumulation of cytokinins at the base of the cuttings. Treatment with AVG neither influenced rooting nor auxin or cytokinin content. Therefore, ethylene production does not seem to be one of the main factors involved in the reduced rooting after the various treatments.