Quantifying the relative roles of selective and neutral processes in defining eukaryotic microbial communities

We have a limited understanding of the relative contributions of different processes that regulate microbial communities, which are crucial components of both natural and agricultural ecosystems. The contributions of selective and neutral processes in defining community composition are often confounded in field studies because as one moves through space, environments also change. Managed ecosystems provide an excellent opportunity to control for this and evaluate the relative strength of these processes by minimising differences between comparable niches separated at different geographic scales. We use next-generation sequencing to characterize the variance in fungal communities inhabiting adjacent fruit, soil and bark in comparable vineyards across 1000 kms in New Zealand. By compartmentalizing community variation, we reveal that niche explains at least four times more community variance than geographic location. We go beyond merely demonstrating that different communities are found in both different niches and locations by quantifying the forces that define these patterns. Overall, selection unsurprisingly predominantly shapes these microbial communities, but we show the balance of neutral processes also have a significant role in defining community assemblage in eukaryotic microbes.     

Complex relationships between species niches and environmental heterogeneity affect species co-occurrence patterns in modelled and real communities

Species co-occurrence analysis is commonly used to assess how interspecific interactions dictate community assembly. Non-random co-occurrences, however, may also emerge from niche differences as well as environmental heterogeneity. The relationships between species co-occurrence patterns, environmental heterogeneity and species niches are not fully understood, due to complex interactions among them. To analyse the relationships among these patterns and processes, I developed synthetic community models and analysed a large dataset of tree species across the conterminous United States. Niche overlap and environmental heterogeneity had significant and contrasting effects on species co-occurrence patterns, in both modelled and real communities. Niche breadth, in turn, affected the effect sizes of both variables on species co-occurrence patterns. The effect of niche breadth on the relationship between co-occurrence and niche overlap was markedly consistent between modelled and real communities, while its effect on the relationship between co-occurrence and environmental heterogeneity was mostly consistent between real and modelled data. The results of this analysis highlight the complex and interactive effects of species niche overlap, niche breadth and environmental heterogeneity on species co-occurrence patterns. Therefore, inferring ecological processes from co-occurrence patterns without accounting for these fundamental characteristics of species and environments may lead to biased conclusions.     

Biogeographical patterns of abundant and rare bacterial biospheres in paddy soils across East Asia

Soil bacterial communities play fundamental roles in ecosystem functioning and often display a skewed distribution of abundant and rare taxa. So far, relatively little is known about the biogeographical patterns and mechanisms structuring the assembly of abundant and rare biospheres of soil bacterial communities. Here, we studied the geographical distribution of different bacterial sub-communities by examining the relative influence of environmental selection and dispersal limitation on taxa distributions in paddy soils across East Asia. Our results indicated that the geographical patterns of four different bacterial sub-communities consistently displayed significant distance–decay relationships (DDRs). In addition, we found niche breadth and dispersal rates to significantly explain differences in community assembly of abundant and rare taxa, directly affecting the strength of DDRs. While conditionally rare and abundant taxa displayed the strongest DDR due to higher environmental filtering and dispersal limitation, moderate taxa sub-communities had the weakest DDR due to greater environmental tolerance and dispersal rate. Random forest models indicated that soil pH (9.13%–49.78%) and average annual air temperature (16.59%–46.49%) were the most important predictors of the variation in the bacterial community. This study advances our understanding of the intrinsic links between fundamental ecological processes and microbial biogeographical patterns in paddy soils.     

Biogeographic responses and niche occupancy of microbial communities following long-term land-use change

Understanding the effects of forest-to-agriculture conversion on microbial diversity has been a major goal in soil ecological studies. However, linking community assembly to the ruling ecological processes at local and regional scales remains challenging. Here, we evaluated bacterial community assembly patterns and the ecological processes governing niche specialization in a gradient of geography, seasonality, and land-use change, totaling 324 soil samples, 43 habitat characteristics (abiotic factors), and 16 metabolic and co-occurrence patterns (biotic factors), in the Brazilian Atlantic Rainforest, a subtropical biome recognized as one the world’s largest and most threatened hotspots of biodiversity. Pairwise beta diversities were lower in pastures than in forest and no-till soils. Pasture communities showed a predominantly neutral model, regarding stochastic processes, with moderate dispersion, leading to biotic homogenization. Most no-till and forest microbial communities followed a niche-based model, with low rates of dispersal and weak homogenizing selection, indicating niche specialization or variable selection. Historical and evolutionary contingencies, as represented by soil type, season, and dispersal limitation were the main drivers of microbial assembly and processes at the local scale, markedly correlated with the occurrence of endemic microbes. Our results indicate that the patterns of assembly and their governing processes are dependent on the niche occupancy of the taxa evaluated (generalists or specialists). They are also more correlated with historical and evolutionary contingencies and the interactions among taxa (i.e., co-occurrence patterns) than the land-use change itself.

     

干旱荒漠区植物生态位对水盐的响应

全球气候变化对生态系统功能的影响决定着种群地位和群落演替,由于干旱区的特殊性成为研究生物响应环境变化的热点地区。为探索艾比湖流域荒漠区植物生态位对土壤水盐梯度的响应,在研究水、盐含量和植物生态位特征的基础上,应用变系数模型,分析了土壤水盐梯度下的群落组成和生态位响应趋势。结果显示:(1)随土壤水盐梯度的降低,艾比湖流域群落的物种组成呈倒"V"型分布,说明土壤水盐交互作用影响着植被分布和群落类型。(2)高水盐环境下,胡杨(Populus euphratica)、琵琶柴(Reaumuria soongorica)和梭梭(Haloxylon ammodendron)等生态位宽度值(B_i)较大,柽柳(Tamarix ramosissima)、骆驼刺(Alhagi sparsifolia)和甘草(Glycyrrhiza uralensis)等B_i较小;中水盐环境下,白刺(Nitraria schoberi)和琵琶柴的B_i较大,铃铛刺(Halimodendron halodendron)、甘草和盐节木(Halocnemum strobilaceum)的B_i较小;低水盐环境下,梭梭、花花柴(Karelinia caspica)和琵琶柴等B_i较大,盐节木的B_i较小;说明土壤水盐环境和物种生态学特性是影响B_i的重要因素。(3)物种水平上,B_i较大的种群与其他物种的生态位重叠(O_(ij))一般较大,但B_i较小的物种间的O_(ij)不一定小(例如:高水盐土壤环境下柽柳和骆驼刺的O_(ij)为1);群落水平上,B_i与O_(ij)具有一定的正相关性;说明由于资源纬度的相似性增大了低B_i物种间的O_(ij),并且B_i和O_(ij)由物种向群落尺度转换时,两者之间的关系存在冗余。(4)土壤水盐梯度与群落生态幅呈现一种非线性相关特征,高水盐格局对群落B_i有一定的促进效应,而低水盐模式对B_i具有一定的限制作用,表明土壤水盐的协同效应影响着物种在群落的地位,并在一定程度上决定了群落向正负两极演替的方向。     

土壤微生物多样性海拔格局研究进展

生物多样性的海拔分布格局与维持机制是生物多样性与生态系统功能研究的热点领域。相比动植物多样性海拔分布格局,土壤微生物多样性海拔分布格局的研究还处在起步阶段。近年来,随着以罗氏454、Illumina Mi Seq等为代表的高通量测序平台的发展,土壤微生物海拔梯度分布格局的研究进展较快。对土壤微生物多样性海拔分布格局最新研究综述发现,土壤微生物海拔分布模式并不明确,表现为无趋势、下降、单峰或者下凹型等多种海拔分布模式。这与大型动植物并不相同,暗示其驱动机制可能存在一定的差异。微生物由于其个体微小、扩散能力强以及较高的多样性和个体丰度而在局域尺度上可能更易受到气候环境因素的影响。土壤pH、碳、氮等因子是影响微生物多样性和群落组成在海拔梯度上变异的重要因素。此外,温度和降水也具有重要作用。另外,除微生物自身属性以及取样限制外,测序深度可能是影响土壤微生物物种丰富度海拔分布格局的重要因素。目前,对土壤微生物群落的研究在功能基因、群落构建机制以及生态学理论的验证方面还存在着不足。未来的研究应进一步加大测序深度,增加取样密度,着重关注全球气候变化及生物多样性丧失背景下土壤微生物群落的构建和维持机制及其生态系统功能等方面。     

雅鲁藏布江中游地区土壤淡色丝孢菌群落多样性及物种生态位研究

从雅鲁藏布江中游地区采集土壤样品35份,主要涵盖农田、城市花园、高山草甸、湿地和防护林带五种生态类型,从中分离获得土壤淡色丝孢菌12属。利用种群优势度、Shannon-Wiener多样性指数、均匀度、生态位宽度、群落相似性等指标对该地区不同生境的土壤淡色丝孢菌物种(属级)的生态多样性及物种生态位进行了分析。结果表明,土壤淡色丝孢菌的数量和类群分布在该地区不同生态类型土壤中差异明显。农田生境中土壤淡色丝孢菌物种多样性指数最高,均匀度较高;防护林带生境中土壤淡色丝孢菌物种多样性指数最低,均匀度也最低。对不同生态类型土壤中淡色丝孢菌的相似性分析发现,农田和防护林带生境的相似性系数最大,说明这两种生境具有较多的共同物种;湿地和城市花园生境的相似性系数最小。物种生态位结果分析表明,在上述五种生境中,拟青霉属Paecilomyces、刺座霉属Volutella、曲霉属Aspergillus和青霉属Penicillium具有较宽的生态位宽度,属于广适性物种;而白僵菌属Beauveria和绿僵菌属Metarhizium生态位很窄,只存在于某个生境中,属于狭适性物种。     

A stochastic biodiversity model with overlapping niche structure

The niche is a fundamental ecological concept that underpins many explanations of patterns of biodiversity. The complexity of niche processes in ecological systems, however, means that it is difficult to capture them accurately in theoretical models of community assembly. In this study, we build upon simple neutral biodiversity models by adding the important ingredient of overlapping niche structure. Our model is spatially implicit and contains a fixed number of equal-sized habitats. Each species in the metacommunity arises through a speciation event; at which time, it is randomly assigned a fundamental niche or set of environments/habitats in which it can persist. Within each habitat, species compete with other species that have different but overlapping fundamental niches. Species abundances then change through ecological drift; each, however, is constrained by its maximum niche breadth and by the presence of other species in its habitats. Using our model, we derive analytical expressions for steady-state species abundance distributions, steady-state distributions of niche breadth across individuals and across species, and dynamic distributions of niche breadth across species. With this framework, we identify the conditions that produce the log-series species abundance distribution familiar from neutral models. We then identify how overlapping niche structure can lead to other species abundance distributions and, in particular, ask whether these new distributions differ significantly from species abundance distributions predicted by non-overlapping niche models. Finally, we extend our analysis to consider additional distributions associated with realized niche breadths. Overall, our results show that models with overlapping niches can exhibit behavior similar to neutral models, with the caveat that species with narrow fundamental niche breadths will be very rare. If narrow-niche species are common, it must be because they are in a non-overlapping niche or have countervailing advantages over broad-niche species. This result highlights the role that niches can play in establishing demographic neutrality.     

Limiting similarity and functional diversity along environmental gradients

Recent developments in community models emphasize the importance of incorporating stochastic processes (e.g. ecological drift) in models of niche‐structured community assembly. We constructed a finite, spatially explicit, lottery model to simulate the distribution of species in a one‐dimensional landscape with an underlying gradient in environmental conditions. Our framework combines the potential for ecological drift with environmentally‐mediated competition for space in a heterogeneous environment. We examined the influence of niche breadth, dispersal distances, community size (total number of individuals) and the breadth of the environmental gradient on levels of species and functional trait diversity (i.e. differences in niche optima). Three novel results emerge from this model: (1) niche differences between adjacent species (e.g. limiting similarity) increase in smaller communities, because of the interaction of competitive effects and finite population sizes; (2) immigration from a regional species pool, stochasticity and niche‐assembly generate a bimodal distribution of species residence times (‘transient’ and ‘resident’) under a heterogeneous environment; and (3) the magnitude of environmental heterogeneity has a U‐shaped effect on diversity, because of shifts in species richness of resident vs. transient species. These predictions illustrate the potential importance of stochastic (although not necessarily neutral) processes in community assembly.     

Compositional divergence and convergence in local communities and spatially structured landscapes

Community structure depends on both deterministic and stochastic processes. However, patterns of community dissimilarity (e.g. difference in species composition) are difficult to interpret in terms of the relative roles of these processes. Local communities can be more dissimilar (divergence) than, less dissimilar (convergence) than, or as dissimilar as a hypothetical control based on either null or neutral models. However, several mechanisms may result in the same pattern, or act concurrently to generate a pattern, and much research has recently been focusing on unravelling these mechanisms and their relative contributions. Using a simulation approach, we addressed the effect of a complex but realistic spatial structure in the distribution of the niche axis and we analysed patterns of species co-occurrence and beta diversity as measured by dissimilarity indices (e.g. Jaccard index) using either expectations under a null model or neutral dynamics (i.e., based on switching off the niche effect). The strength of niche processes, dispersal, and environmental noise strongly interacted so that niche-driven dynamics may result in local communities that either diverge or converge depending on the combination of these factors. Thus, a fundamental result is that, in real systems, interacting processes of community assembly can be disentangled only by measuring traits such as niche breadth and dispersal. The ability to detect the signal of the niche was also dependent on the spatial resolution of the sampling strategy, which must account for the multiple scale spatial patterns in the niche axis. Notably, some of the patterns we observed correspond to patterns of community dissimilarities previously observed in the field and suggest mechanistic explanations for them or the data required to solve them. Our framework offers a synthesis of the patterns of community dissimilarity produced by the interaction of deterministic and stochastic determinants of community assembly in a spatially explicit and complex context.     

小麦-玉米轮作农田土壤螨多样性空间分布格局

以农田土壤动物长期监测样地为平台, 阐明土壤动物物种和功能多样性空间分布格局, 是揭示农田土壤动物多样性维持机制、提高农田土壤质量的重要基础。本试验于2020年10月, 对河南商丘农田土壤动物大型固定样地(9 ha)的210个采样点进行土壤样品野外采集和室内分离, 将土壤螨样品鉴定到种并测量其体长体宽数据, 以说明小麦-玉米轮作农田土壤螨多样性及其体长体宽的空间分布格局。结果表明: (1)共捕获成螨个体17,256头, 其中甲螨亚目为优势类群, 其个体数占总捕获量的94.67%; MGP分析表明样地甲螨群落属于P型, 说明受人为因素影响强烈; 生态位宽度和重叠度分析表明, 进化程度越高甲螨的生态位宽度越宽, 进化程度越相近甲螨之间的竞争越激烈。(2) Moran’s I分析显示, 在20-100 m的空间尺度上, 土壤螨群落、优势种的个体数和体长体宽多为显著正相关; 在220-300 m的空间尺度上, 部分为显著负的空间自相关。半方差函数结果表明, 甲螨群落物种数、个体数和体长体宽的空间变异主要受确定性过程影响, 中气门螨群落的空间变异由确定性和随机性过程共同影响。(3)土壤螨个体数与体长体宽存在显著弱的负相关关系, 这种关系普遍存在于土壤螨各群落与优势种中。本研究建议同时开展物种多样性和以体长体宽为代表的功能多样性空间格局研究, 对揭示土壤螨群落维持机制、保护土壤螨多样性具有重要意义。     

Australian Tropical and Subtropical Rain Forest Community Assembly: Phylogeny,Functional Biogeography,and Environmental Gradients

To compare community assemblage patterns in tropical northeastern and subtropical central eastern Australia across selected gradients and scales, we tested the relationship of species traits with phylogenetic structure, and niche breadth. We considered phylogenetic relationships across current‐day species in assemblages in relation to rain forest species pool sizes, and trait values along gradients including elevation and latitude. Trait values were quantified across scales for seed size, leaf area, wood density and maximum height at maturity for 1137 species and 596 assemblages using trait gradient analysis (TGA). Local assemblages of subtropical species had narrower trait ranges, and higher niche breadth values than corresponding assemblages of tropical species. Leaf size and seed size increased at low latitudes, and community phylogenetic structure was most strongly correlated with seed traits in the subtropics, reflecting dispersal and re‐colonization processes. Elevation accounted for little of the variance in community phylogenetic structure or trait variation across local and regional scales. Stable moist forest areas retained many species from ancestral rain forest lineages across a range of temporally conserved habitats; species within assemblages were less related; and rain forest assemblages had higher functional diversity, but lower niche breadth. This suggests that on average, assemblages of species in stable areas had greater trait variation and narrower distributions. Historic and recent rain forest contraction and re‐expansion can result in recolonized areas that are dominated by species that are more related (phylogenetically) than by chance, have smaller, widely dispersed seeds, and greater niche breadth (broader distributions).     

农业活动对三江平原湿地主要植物种群生态位的影响

农业活动是三江平原湿地主要干扰方式之一,长期的农业活动已对该区域湿地生态环境产生显著影响。本研究以三江平原退化湿地20种主要植物为研究对象,分析其在土壤含水量、土壤有机碳、全氮、碱解氮、全磷、速效磷、全钾、速效钾8个资源维上的生态位宽度及生态位重叠特征,揭示农业活动导致的生境退化对湿地主要植物种群生态位产生的影响。研究结果表明：优势种中,小叶章具有最大生态位宽度,漂筏苔草具有最小生态位宽度。伴生种中,球尾花具有最大生态位宽度。湿地植物对不同资源的利用能力存在差异。60%的湿地植物对土壤有机碳表现为较窄的生态位宽度,70%以上的湿地植物在土壤含水量、氮、磷、钾资源维具有较高的生态位宽度。优势种在土壤含水量、土壤有机碳和氮资源维表现出不同的生态位宽度和生态位重叠,这种差异是影响湿地优势物种分布和种群生态位分化的主要原因之一。农业活动导致的土壤养分的变化,会引起植物种群间对有限资源的竞争,成为影响植物群落物种组成和群落动态的关键因素。     

Seed mucilage interacts with soil microbial community and physiochemical processes to affect seedling emergence on desert sand dunes

Seedling emergence is a critical stage in the establishment of desert plants. Soil microbes participate in plant growth and development, but information is lacking with regard to the role of microbes on seedling emergence. We applied the biocides (captan and streptomycin) to assess how seed mucilage interacts with soil microbial community and physiochemical processes to affect seedling emergence of Artemisia sphaerocephala on the desert sand dune. Fungal and bacterial community composition and diversity and fungal–bacterial interactions were changed by both captan and streptomycin. Mucilage increased soil enzyme activities and fungal–bacterial interactions. Highest seedling emergence occurred under streptomycin and mucilage treatment. Members of the phyla Firmicutes and Glomeromycota were the keystone species that improved A. sphaerocephala seedling emergence, by increasing resistance of young seedlings to drought and pathogen. Seed mucilage directly improved seedling emergence and indirectly interacted with the soil microbial community through strengthening fungal–bacterial interactions and providing favourable environment for soil enzymes to affect seedling emergence. Our study provides a comprehensive understanding of the regulatory mechanisms by which soil microbial community and seed mucilage interactively promote successful establishment of populations of desert plants on the barren and stressful sand dune.     

Metabolic Flexibility as a Major Predictor of Spatial Distribution in Microbial Communities

A better understand the ecology of microbes and their role in the global ecosystem could be achieved if traditional ecological theories can be applied to microbes. In ecology organisms are defined as specialists or generalists according to the breadth of their niche. Spatial distribution is often used as a proxy measure of niche breadth; generalists have broad niches and a wide spatial distribution and specialists a narrow niche and spatial distribution. Previous studies suggest that microbial distribution patterns are contrary to this idea; a microbial generalist genus (Desulfobulbus) has a limited spatial distribution while a specialist genus (Methanosaeta) has a cosmopolitan distribution. Therefore, we hypothesise that this counter-intuitive distribution within generalist and specialist microbial genera is a common microbial characteristic. Using molecular fingerprinting the distribution of four microbial genera, two generalists, Desulfobulbus and the methanogenic archaea Methanosarcina, and two specialists, Methanosaeta and the sulfate-reducing bacteria Desulfobacter were analysed in sediment samples from along a UK estuary. Detected genotypes of both generalist genera showed a distinct spatial distribution, significantly correlated with geographic distance between sites. Genotypes of both specialist genera showed no significant differential spatial distribution. These data support the hypothesis that the spatial distribution of specialist and generalist microbes does not match that seen with specialist and generalist large organisms. It may be that generalist microbes, while having a wider potential niche, are constrained, possibly by intrageneric competition, to exploit only a small part of that potential niche while specialists, with far fewer constraints to their niche, are more capable of filling their potential niche more effectively, perhaps by avoiding intrageneric competition. We suggest that these counter-intuitive distribution patterns may be a common feature of microbes in general and represent a distinct microbial principle in ecology, which is a real challenge if we are to develop a truly inclusive ecology.     

植物与土壤微生物在调控生态系统养分循环中的作用

陆地生态系统的地上、地下是相互联系的。植物与土壤微生物作为陆地生态系统中的重要组成部分, 它们之间的相互作用是生态系统地上、地下结合的重要纽带。该文首先介绍了植物在养分循环中对营养元素的吸收、积累和归还等作用, 阐述了土壤微生物对养分有效性及土壤质量具有重要的作用。其次, 重点综述了植物与土壤微生物之间相互依存、相互竞争的关系。植物通过其凋落物与分泌物为土壤微生物提供营养, 土壤微生物作为分解者提供植物可吸收的营养元素, 比如共生体菌根真菌即可使植物根与土壤真菌达到互惠。然而, 植物的养分吸收与微生物的养分固持同时存在, 因而两者之间存在对养分的竞争。通过植物多样性对土壤微生物多样性的影响分析, 以及土壤微生物直接或间接作用于植物多样性和生产力的分析, 探讨了植物物种多样性与土壤微生物多样性之间的内在联系。针对当前植物与土壤微生物对养分循环的调控机制的争论, 提出植物凋落物是调节植物与土壤微生物养分循环的良好媒介, 植物与土壤微生物的共同作用对维持整个生态系统的稳定性具有重要意义。也指出了目前在陆地生态系统地上、地下研究中存在的不足和亟待解决的问题。     

荒漠草原“土岛”生境群落物种共存机制

经过长期破碎化, 荒漠草原原生硬质灰钙土斑块散布在广大沙化土地中, 形成类似“土岛”的土被结构。为揭示土岛生境的群落物种共存机制, 2016年在宁夏盐池县皖记沟村选取大(200-300 m²)、中(约100 m²)、小(约50 m²)土岛各3个开展调查, 采用Jaccard相异系数、物种生态位宽度和生态位重叠度、零模型、Meta分析, 综合计算和分析土岛内部与外部植物群落相似性、物种生态位宽度和生态位重叠、物种共存格局及其影响因子。研究发现, (1)随着破碎化加剧, 土岛内部植物多样性整体呈现下降趋势, 群落优势种从短花针茅(Stipa breviflora)转变为猪毛蒿(Artemisia scoparia)和短花针茅共优种, 土岛内外群落相似性增加。(2)土岛内外绝大多数物种生态位重叠较小, 生态位重叠在土岛内呈集中分布, 而土岛外则呈均匀发散分布。(3)环境过滤为主的生态过程决定了土岛生境群落物种的共存格局, 随着土岛面积减小, 环境因子对群落物种共存的调控强度降低, 关键性环境因子由土壤细砂粒和黏粒转变为粗砂粒, 显著性竞争物种共存格局在小岛出现。综上所述, 土岛生境对于维持草原物种具有重要作用, 环境过滤主导了荒漠草原物种共存格局。随着生境破碎化加剧或土岛面积减小, 物种共存格局及其调控因子发生转变。保护面积在200 m²以上的大土岛对于恢复荒漠草原区草原成分种和其物种多样性机制都十分必要。     

Macroecological Patterns of Climatic Niche Breadth Variation in Lacertid Lizards

Measuring climatic niche position and breadth may help to determine where species can occur over space and time. Using GIS-based and phylogenetic comparative methods, we investigated global patterns of variation in climatic niche breadth in lacertid lizards to test the following three hypotheses about climatic niche widths. First, does a species' temperature or precipitation niche breadth relate to its temperature or precipitation niche position(the mean value of annual mean temperature or annual precipitation across sampled localities in the range of each species)? Second, are there trade-offs between a species' temperature niche breadth and precipitation niche breadth? Third, does a species' temperature or precipitation niche breadth relate to altitude or latitude? We expect that:(1) species distributed in cold regions are specialized for low-temperature environments(i.e. narrow niche breadth center around low temperatures);(2) a negative relationship between species niche breadth on temperature and precipitation axes according to the tradeoff hypothesis(i.e. species that tolerate a broad range of precipitation regimes cannot also tolerate a broad range of temperatures);(3) precipitation niche breadth decreases with altitude or latitude, whereas temperature climatic niche breadth increases with altitude or latitude. Based on the analytical results we found that:(1) temperature niche breadth and position are negatively related, while precipitation niche breadth and position are positively related;(2) there is no trade-off between temperature and precipitation niche breadths; and (3) temperature niche breadth and latitude/altitude are positively related, but precipitation niche breadth and latitude/altitude are not significantly related. Our results show many similarities with previous studies on climatic niche widths reported for amphibians and lizards, which provide further evidence that such macroecological patterns of variation in climatic niche breadths may be widespread.     

Soil ecological interactions: comparisons between tropical and subalpine forests

Soil fauna can influence soil processes through interactions with the microbial community. Due to the complexity of the functional roles of fauna and their effects on microbes, little consensus has been reached on the extent to which soil fauna can regulate microbial activities. We quantified soil microbial biomass and maximum growth rates in control and fauna-excluded treatments in dry and wet tropical forests and north- and south-facing subalpine forests to test whether soil fauna effects on microbes are different in tropical and subalpine forests. Exclusion of fauna was established by physically removing the soil macrofauna and applying naphthalene. The effect of naphthalene application on the biomass of microbes that mineralize salicylate was quantified using the substrate induced growth response method. We found that: (1) the exclusion of soil fauna resulted in a higher total microbial biomass and lower maximum growth rate in the subalpine forests, (2) soil fauna exclusion did not affect the microbial biomass and growth rate in the tropical forests, and (3) the microbial biomass of salicylate mineralizers was significantly enhanced in the fauna-exclusion treatment in the tropical wet and the south-facing subalpine forests. We conclude that non-target effects of naphthalene on the microbial community alone cannot explain the large differences in total microbial biomass found between control and fauna-excluded treatments in the subalpine forests. Soil fauna have relatively larger effects on the microbial activities in the subalpine forests than in tropical dry and wet forests.     

18S rDNA gene metabarcoding of microeukaryotes and epi-endophytes in the holobiome of seven species of large brown algae

Brown algae (Phaeophyceae) are habitat-forming species in coastal ecosystems and include kelp forests and seaweed beds that support a wide diversity of marine life. Host-associated microbial communities are an integral part of phaeophyte biology, and whereas the bacterial microbial partners have received considerable attention, the microbial eukaryotes associated with brown algae have hardly been studied. Here, we used broadly targeted “pan-eukaryotic” primers (metabarcoding) to investigate brown algal-associated eukaryotes (the eukaryome). Using this approach, we aimed to investigate the eukaryome of seven large brown algae that are important and common species in coastal ecosystems. We also aimed to assess whether these macroalgae harbor novel eukaryotic diversity and to ascribe putative functional roles to the host-associated eukaryome based on taxonomic affiliation and phylogenetic placement. We detected a significant diversity of microeukaryotic and algal lineages associated with the brown algal species investigated. The operational taxonomic units (OTUs) were taxonomically assigned to 10 of the eukaryotic major supergroups, including taxonomic groups known to be associated with seaweeds as epibionts, endobionts, parasites, and commensals. Additionally, we revealed previously unrecorded sequence types, including novel phaeophyte OTUs, particularly in the Fucus spp. samples, that may represent fucoid genomic variants, sequencing artifacts, or undescribed epi-/endophytes. Our results provide baseline data and technical insights that will be useful for more comprehensive seaweed eukaryome studies investigating the evidently lineage-rich and functionally diverse symbionts of brown algae.