El Niño impacts on human-modified tropical forests: Consequences for dung beetle diversity and associated ecological processes

Our knowledge of how tropical forest biodiversity and functioning respond to anthropogenic and climate-associated stressors is limited. Research exploring El Niño impacts are scarce or based on single post-disturbance assessments, and few studies assess forests previously affected by anthropogenic disturbance. Focusing on dung beetles and associated ecological functions, we assessed (a) the ecological effects of a strong El Niño, (b) if post-El Niño beetle responses were influenced by previous forest disturbance, and (c) how these responses compare between forests impacted only by drought and those affected by both drought and fires. We sampled 30 Amazonian forest plots distributed across a gradient of human disturbance in 2010, 2016, and 2017—approximately 5 years before, and 3–6 and 15–18 months after the 2015–16 El Niño. We found 14,451 beetles from 98 species and quantified the beetle-mediated dispersal of >8,600 seed mimics and the removal of c. 30 kg of dung. All dung beetle responses (species richness, abundance, biomass, compositional similarity to pre-El Niño condition, and rates of dung removal and seed dispersal) declined after the 2015–16 El Niño, but the greatest immediate losses (i.e., in 2016) were observed within fire-affected forests. Previous forest disturbance also influenced post-El Niño dung beetle species richness, abundance, and species composition. We demonstrate that dung beetles and their ecological functions are negatively affected by climate-associated disturbances in human-modified Amazonian forests and suggest that the interaction between local anthropogenic and climate-related stressors merits further investigation.     

El Niño droughts and their effects on tree species composition and diversity in tropical rain forests

In this study I investigated the effects of the extreme, 1997/98 El Niño related drought on tree mortality and understorey light conditions of logged and unlogged tropical rain forest in the Indonesian province of East Kalimantan (Borneo). My objectives were to test (1) whether drought had a significant effect on tree mortality and understorey light conditions, (2) whether this effect was greater in logged than in undisturbed forest, (3) if the expected change in tree mortality and light conditions had an effect on Macaranga pioneer seedling and sapling densities, and (4) which (a)biotic factors influenced tree mortality during the drought. The 1997/1998 drought led to an additional tree mortality of 11.2, 18.1, and 22.7% in undisturbed, old logged and recently logged forest, respectively. Mortality was highest in logged forests, due to extremely high mortality of pioneer Macaranga trees (65.4%). Canopy openness was significantly higher during the drought than during the non-drought year (6.0, 8.6 and 10.4 vs 3.7, 3.8 and 3.7 in undisturbed, old logged and recently logged forest, respectively) and was positively correlated with the number of dead standing trees. The increase in light in the understorey was accompanied by a 30 to 300-fold increase in pioneer Macaranga seedling densities. Factors affecting tree mortality during drought were (1) tree species successional status, (2) tree size, and (3) tree location with respect to soil moisture. Tree density and basal area per surface unit had no influence on tree mortality during drought. The results of this study show that extreme droughts, such as those associated with El Niño events, can affect the tree species composition and diversity of tropical forests in two ways: (1) by disproportionate mortality of certain tree species groups and tree size classes, and (2) by changing the light environment in the forest understorey, thereby affecting the recruitment and growth conditions of small and immature trees.     

Impact of game hunting by the Kayapó of south-eastern Amazonia: implications for wildlife conservation in tropical forest indigenous reserves

Indigenous forest reserves represent approximately one fifth of Brazilian Amazonia and pose enormous challenges for sustainable natural resource management by native Amazonians. In collaboration with the Kayapó Indians of A’Ukre of southeastern Amazonia, we obtained a game harvest profile of over 1360 forest vertebrates consumed at this village over a 20-month period, including 743 mammals, 361 forest tortoises and 256 birds from a minimum of 42 game species. This amounted to a total of 13,775 kg of game animals harvested over the entire study (mean = 26.2 kg d⁻¹). We also obtained some 450 km of line transect census data of midsized to large-bodied vertebrates within the core hunting catchment of this village and in an unhunted but otherwise comparable site upriver of A’Ukre. Population density estimates of 16 of the 18 species censused were significantly depressed by hunting by central place foragers within the village catchment, and a number of harvest-sensitive prey species showed clear evidence of local depletion. For the time being, however, we can conclude that hunting was sustainable at the landscape scale largely because source-sink dynamics in the context of low village catchment density is made possible by large surrounding tracts of primary forest that remain unharvested or underharvested.     

Correspondence between Scientific and Traditional Ecological Knowledge: Rain Forest Classification by the Non-Indigenous Ribereños in Peruvian Amazonia

Traditional ecological knowledge (TEK) is a potential source of ecological information. Typically TEK has been documented at the species level, but habitat data would be equally valuable for conservation applications. We compared the TEK forest type classification of ribereños, the non-indigenous rural peasantry of Peruvian Amazonia, to a floristic classification produced using systematically collected botanical data. Indicator species analysis of pteridophytes in 300 plots detected two forest types on non-flooded tierra firme, each associated with distinct soil texture and fertility, and one forest type in areas subject to flooding. Nine TEK forest types were represented in the same set of plots. Each TEK forest type was consistently (>82%) associated with one of the three floristic classes and there were also clear parallels in the ecological characterizations of the forest types. Ribereños demonstrated clear preferences for certain forest types when selecting sites for slash-and-burn agriculture and hunting. Our results indicate that the non-tribal inhabitants of Amazonia possess valuable TEK that could be used in biodiversity inventories and wildlife management and conservation for characterizing primary rain forest habitats in Amazonia.     

Urban-rural differences in immune responses to mycobacterial and tetanus vaccine antigens in a tropical setting: A role for helminths?

Several vaccines elicit lower efficacy or impaired immune responses in rural compared to urban settings, and in tropical low-income countries compared to high-income countries. An unresolved hypothesis is that immunomodulation by parasitic infections such as helminths (prevalent in rural tropical settings) contributes to suppression of vaccine responses. Among 1–17-year-old Ugandan residents of rural Schistosoma mansoni (Sm)-endemic islands and proximate urban communities with lower helminth exposure, we assessed plasma antibody and whole blood assay cytokine responses to tetanus toxoid (TT) and purified protein derivative of Mycobacterium tuberculosis (PPD). These were taken to represent recall responses to tetanus and BCG vaccination in infancy. PPD-specific responses are additionally induced by tuberculous and non-tuberculous mycobacterial exposure. Urban-rural comparisons showed that PPD-specific IFN-γ and IL-13 and TT-specific IL-13 and IgG concentrations were lower in the rural setting, but that PPD-specific IgE concentrations were higher. Among rural participants, Sm infection was inversely associated with PPD-specific IFN-γ, while nematode infection was positively associated with PPD-specific IgG. Among urban participants, Sm infection was positively associated with PPD-specific responses but inversely associated with TT-specific responses, while nematode infection was inversely associated with TT-specific IgG and IgG4, but no associations were observed with PPD-specific responses. Despite these associations, for the urban-rural comparisons there were no notable changes in test statistics after adjusting for current helminth infections, suggesting that helminths were not the sole explanation for the urban-rural differences observed. Helminths likely work in concert with other environmental exposures and operational factors to influence vaccine response.     

Phylogeography and subspecies assessment of vicuñas in Chile and Bolivia utilizing mtDNA and microsatellite markers: implications for vicuña conservation and management

The rearing and maintenance of wildvicuñas in semi-captivity for economicutilization is practiced mainly in Peru, butArgentina, Bolivia, and Chile are quicklydeveloping their own programs of economic use. Large scale rearing practices will likelyisolate populations and may foster selectivebreeding. In addition to these concerns, thereare also uncertainties about the distributionand validity of the currently recognizedsubspecies. To better understand the potentialimpact that economic utilization will have onthe vicuña, we describe the moleculargenetic variation among four populations andboth described subspecies. An analysis of 794~bp of mitochondrial DNA sequences (16s,cytochrome b genes, and mtDNA control region)revealed appreciable genetic diversity, low tomoderate levels of genetic differentiation, andrestricted gene flow with isolation by distanceamong populations. Analysis of microsatellitedata also indicated genetic differentiationamong populations. Past climatic and geologicevents, coupled with human history, have likelysubjected the vicuña to various episodes ofpopulation isolation and admixture. Therefore,we suggest that managers aim to ensure geneflow among adjoining populations, as observedat mtDNA and microsatellite loci, as well asmaintaining apparent restricted gene flow withisolation by distance among populationsseparated by great distances. Intensiverearing procedures like those being practicedin Peru will ultimately disrupt movements andmigration among wild populations. Furthermore,animals that are not exposed to predation byremaining inside fences, may overtime, loseportions of their behavioral repertoire thatenable them to recognize potentially dangeroussounds associated with the presence ofpredators. Therefore, we do not recommend thatanimals be placed behind fences as this couldlead to a loss of genetic and behavioraldiversity as well as halting natural ecologicalprocesses. If, however, vicuñas are placedbehind fences for commercial purposes (withlittle or no regard for the retention ofgenetic, and/or behavioral diversity as well asnatural population processes) then we suggestclose genetic monitoring of animals that are(will be) maintained in captivity.     

Seasonal and El Niño Southern Oscillation-driven variations in isotopic and elemental patterns among estuarine primary producers: implications for ecological studies

Estuaries are complex systems where environmental fluctuations occur over distinct timescales due to local meteorological and large-scale climatic factors. Consequently, studies with low temporal resolution and taxonomic coverage may fail to detect isotopic variations in basal sources, providing biased interpretations of isotope mixing models. We investigated the seasonal and El Niño Southern Oscillation (ENSO)-driven interannual variations in δ¹³C, δ¹⁵N and C:N values among distinct basal sources and their implications for mixing models interpretation in a subtropical estuary. δ¹³C variations among sources differed in their magnitude and timescales, being large enough to confound source-specific values. Macroalgae and POM δ¹³C varied seasonally, whereas ENSO effects prevailed for C₃ and C₄ salt marsh plants, highlighting the contrasting influence of local versus remote environmental drivers on short- and long-lived primary producers, respectively. Peaks of δ¹⁵N were detected for all sources during short-term anthropogenic nutrient inputs. Isotope mixing model comparisons showed that overlooking isotopic variations in basal sources under distinct ENSO conditions can cause misinterpretation of local trophic interactions and nutrient cycling. The present study contributes to design appropriate sampling delineations in highly variable aquatic environments, emphasizing the importance of comprehensive, long-term monitoring of estuarine primary producers to encompass environmental drivers of stable isotopic variations.

     

Viability of invertebrate diapausing eggs exposed to saltwater: implications for Great Lakes’ ship ballast management

International shipping has been the dominant vector of nonindigenous species introductions to the Laurentian Great Lakes over the past century. Apparent ballast-mediated invasions have been recorded in recent years, despite the implementation of voluntary ballast water exchange regulations in 1989. Since unregulated no-ballast-on-board vessels currently dominate inbound traffic to the Great Lakes, it has been proposed that live or dormant organisms contained in residual ballast of these vessels may be partially responsible for recent invasions. Alternatively, euryhaline species may pose a significant invasion threat because they can potentially survive ballast exchange. In this study, we explored whether exposure to open-ocean water (32) reduced the viability of invertebrate diapausing eggs in ballast sediments. Sediments collected from three transoceanic ships and from three freshwater habitats were exposed to open-ocean seawater. Egg viability, assessed as the abundance of taxa hatched between exposed and unexposed sediments, was not affected by saltwater exposure in any experiment. Species richness of hatched diapausing eggs was reduced by saltwater exposure in only one of seven trials. Our results indicate that oligostenohaline zooplankton may pose an invasion risk because their diapausing eggs are largely resistant to exposure to open-ocean saltwater.     

Old‐growth forests,carbon and climate change: Functions and management for tall open‐forests in two hotspots of temperate Australia

Abstract

The prognosis and utility under climate change are presented for two old‐growth, temperate forests in Australia, from ecological and carbon accounting perspectives. The tall open‐forests (TOFs) of south‐western Australia (SWA) are within Australia’s global biodiversity hotspot. The forest management and timber usage from the carbon‐dense old‐growth TOFs of Tasmania (TAS) have a high carbon efflux, rendering it a carbon hotspot. Under climate change the warmer, dryer climate in both areas will decrease carbon stocks directly; and indirectly through changes towards dryer forest types and through positive feedback. Near 2100, climate change will decrease soil organic carbon (SOC) significantly, e.g. by ～30% for SWA and at least 2% for TAS. The emissions from the next 20 years of logging old‐growth TOF in TAS, and conversion to harvesting cycles, will conservatively reach 66(±33) Mt‐CO₂‐equivalents in the long‐term – bolstering greenhouse gas emissions. Similar emissions will arise from rainforest SOC in TAS due to climate change. Careful management of old‐growth TOFs in these two hotspots, to help reduce carbon emissions and change in biodiversity, entails adopting approaches to forest, wood product and fire management which conserve old‐growth characteristics in forest stands. Plantation forestry on long‐cleared land and well‐targeted prescribed burning supplement effective carbon management.

Abbreviations: C, carbon; CBS, clearfell, burn and sow; CO₂‐e, CO₂ equivalents; CWD, coarse woody debris; DOC, dissolved organic carbon; GHG, greenhouse gas; Mt, megatonnes; SOC, soil organic carbon; SWA, south‐western Australia; SWAFR, Southwest Australian Floristic Region; TAS, Tasmania; TOF, tall open‐forest; t‐C ha^?1 yr^?1, tonnes of carbon per hectare per year     

The chemical nature of P accumulation in agricultural soils��implications for fertiliser management and design: an Australian perspective

Sand burial, persistent seed bank and soil water content (SWC) are three factors that potentially can affect regeneration in sand dune plant populations. To evaluate the effects of these three factors on population regeneration of Eremosparton songoricum, a rare and endangered legume, we investigated seed germination, seedling emergence and seedling survival in greenhouse and controlled field experiments in different sand dunes microsites. Freshly matured seeds are physically dormant, and the highest germination was only 9.3?±?5.8% at 25/10°C. Seed germination occurred at burial depths from 0 to 10 cm, but the maximum depth from which seedlings emerged was 6 cm; from 1 to 6 cm, the deeper the burial, the lower the percentage of seedling emergence. Only 36.2% of the total soil seed banks occurred at depths of 0?C6 cm. For artificially sown seeds at different dune microsites, mean seedling emergence percentage was 6.8%. Of 150 seedlings that emerged in the field investigation at the study site, only those germinating in flat sandy areas survived, and mean survival percentage was only 2.0%. Thus, the proportion of non-dormant seeds in soil seed banks that developed into seedlings and survived to the end of the growing season was only 0.2%. Minimum SWC for seed germination, seedling emergence and seedling survival was 2.0%. During monitoring of emergent seedlings in the field, low seedling recruitment was at least partly due to the rate of root extension (1.6?±?0.3 cm day^?1) into the sandy soil, which was slower than that of the downward movement of plant-available moisture (2.8?±?0.6 cm day^?1). Thus, population regeneration under natural conditions rarely occurred via sexual reproduction, owing to the limited water resources available for seedling establishment. Rational field seeding practices, including manually scarified or dry stored seeds before sowing, sowing the seeds at right time and suitable place, are suggested for ecological restoration of endangered E. songoricum populations.     

Genetic and morphological variation in the Bulbophyllum exaltatum (Orchidaceae) complex occurring in the Brazilian “campos rupestres”: implications for taxonomy and biogeography

The Bulbophyllum exaltatum complex comprises 15 described taxa, and present a number of unresolved taxonomic questions, especially among populations found in the Brazilian campo rupestre vegetation. Allozymes were examined in 33 populations to determine the degree of genetic variability between them and their degree of differentiation to better define the taxa of this group. Additionally morphometric analyses were also performed on representatives of 24 populations. All of the populations examined demonstrated high levels of variability and none of the species formed distinct groups comprising all of the conspecific populations. However, the populations primarily grouped according to their regional occurrence, with a distinction between populations of the states of Minas Gerais and Bahia, which coincided with the geophysical disjunction of the mountain chains where they occur. It is probable that hybridization or incipient differentiation is contributing to the elevated genetic identity observed among the populations, generating a reticulated grouping pattern.     

Correction to: Dose–responses for mortality from cerebrovascular and heart diseases in atomic bomb survivors: 1950–2003

Radiation and Environmental Biophysics - The article Dose–responses for mortality from cerebrovascular and heart diseases in atomic bomb survivors: 1950–2003, written by Helmut...     

From evergreen to deciduous tropical forests: how energy–water balance,temperature, and space influence the tree species composition in a high diversity region

Background: Understanding floristic and geographic patterns in one of the most biodiverse regions in the world – the Atlantic forest of eastern Bahia, Brazil – can identify the drivers of diversity in tropical forests and provide useful information for biological conservation.

Aims: To understand the role of both climate and geographical location on variation in tree species composition in a region characterised by an abrupt transition from wet forests to semi-arid thorn-woodlands. To test whether a regional classification of forests according to elevation belts and leaf flush pattern is consistent with floristic composition.

Methods: We submitted 14,094 tree species occurrence records and 31 geo-climatic variables prepared for 57 sites in eastern Bahia, Brazil, to multivariate and regression analyses and variance partitioning.

Results: Climate and space were both significantly (P ≤ 0.05) contributing to explaining floristic variations. Actual evapotranspiration, duration of water deficit, and minimum temperature of coldest month were the main predictors. Floristic differences were significant except when comparing evergreen lower plains and upper plains forests.

Conclusions: Although distance among sites may play an important role, species composition is chiefly influenced by environmental gradients. This highlights environmental heterogeneity as a key factor in the planning of biodiversity conservation in tropical forests.     

IL-4 inhibits the TNF-α induced proliferation of renal cell carcinoma (RCC) and cooperates with TNF-α to induce apoptotic and cytokine responses by RCC: implications for antitumor immune responses

Objective: While previous reports clearly demonstrated antiproliferative effects of IL-4 on renal cell carcinoma (RCC) in vitro, the administration of IL-4 to patients with metastatic RCC in clinical trials could not recapitulate the promising preclinical results. In the present study we wanted to examine the context of IL-4 action and to establish conditions of enhanced IL-4 efficacy. Methods: Primary and permanent human RCC cells were cultured in either serum-supplemented or chemically defined, serum-free culture medium in the presence or absence of cytokines. Cell proliferation was assessed as [³H]-thymidine incorporation. Cell apoptosis was measured using the fluorescent DNA intercalator 7-aminoactinomycin D and flow cytometry. In addition, culture media conditioned by RCC were subjected to cytokine antibody array and cytokine multiplex analysis. Results: Our results indicate that the previously reported antiproliferative effects of IL-4 are serum-dependent. Under serum-free conditions, IL-4 failed to exhibit growth-inhibitory effects or was even growth-stimulatory. In a chemically defined, serum-free medium (AIM-V), however, IL-4 inhibited the TNF-α induced proliferation of RCC. IL-4 and TNF-α synergistically induced apoptosis of RCC as well as a complex cytokine response by RCC, which included the synergistic upregulation of RANTES and MCP-1. Conclusions: IL-4 alone has little effect on the spontaneous proliferation of RCC but can prevent the enhancement of proliferation induced by growth promoters like FBS and TNF-α. The concomitant growth inhibitory, apoptosis-inducing, and cytokine-enhancing effects of IL-4 in combination with TNF-α on RCC support the view that Th2 cytokines may be required for productive immune responses against RCC.     

Relation between phosphate and organic matter in fish-pond sediments of the Deroua fish farm (Béni-Mellal, Morocco): implications for pond management

An experimental approach of the phosphate exchange across the water–sediment interface in fish ponds of the Deroua farm (Béni-Mellal, Morocco) is needed to understand the phosphate dynamics in these ponds in relation to their water quality. During this study, we conducted experiments to determine the P-fractions of the different pond sediments and to estimate the release from these sediments of phosphate available for algal uptake. We also determined the amount of phosphate needed to saturate the sediments of two different fish ponds under anoxic and oxic conditions. Phosphate release from sediments comes mainly from Fe(OOH)P and is more important in ponds lined with sheets. The accumulation of organic matter in sediments favours the installation of anoxic conditions and enhances the phosphate release from CaCO₃P, labile in these pond sediments. Under experimental conditions, org-P plays a minor role in the P-release. Oxic conditions, to the contrary, have an inhibitory effect on the P-release from sediments. About 80–98% of the P-adsorbed onto different pond sediments was recovered in the inorg-P-fractions. Aeration induces the oxidation of FeS to Fe(OOH) which can adsorb phosphate from solution. Besides, the presence of bacteria in pond sediments was essential to promote phosphate release under anoxic conditions by controlling the oxidation state of iron and the mineralization of the organic matter. Sheet-lined ponds, when insufficiently dried, accumulate a large quantity of organic matter in their sediments. After a decrease in pH, P is released from CaCO₃P and enhances the phytoplankton productivity responsible for renewed accumulation of organic matter. Org-C concentrations in sediments over 20 mg g^–1 d.w. favour the formation of toxic factors (Fe²⁺, Mn²⁺, NO₂ ^– and H₂S) harmful for carp growth. An extended period of drying efficiently enhances the mineralization of organic matter.     

Beryllium(II) binding to ATP and ADP: Potentiometric determination of the thermodynamic constants and implications for in vivo toxicity

Highly toxic beryllium(II) is divalent metal ion with a high charge density, making it a potential target for binding to bio-molecules rich in O donor groups. In aqueous solution Be2+ binds to ATP and ADP to form 1:1 Be2+:ATP and Be2+:ADP complexes in relatively acidic media. At neutral pH the complex formed undergoes hydrolysis. Be2+ binding to ATP and ADP is much stronger than Ca2+ and Mg2+ binding. The high affinity of Be2+ toward ATP and ADP binding suggests a mechanism relevant to understanding the in vivo chemical toxicity of this metal.     

Genetic diversity and population structure of Eugenia dysenterica DC. (``cagaiteira' – Myrtaceae) in Central Brazil: Spatial analysis and implications for conservation and management

Studies about the organization of the genetic variability and population structure in natural plant populations are used to support conservation and management programs. Among the Cerrado fruit tree species that possess potential economic importance in agriculture, the “Cagaiteira” (Eugenia dysenterica DC. – Myrtaceae), deserves an special position. We obtained information about allele and genotypic frequencies in 10 local populations, situated up to 250 km apart, from six isozymes that furnished a total of 8 loci. The average within-population fixation index (f) was 0.337, and the out crossing rate was 0.835, suggesting a mixed mating system for this species, which seems to be preferably alogamous. Based on genetic diversity and analysis of variance techniques, a high degree of population differentiation (θ_P = 0.154) was found, in comparison with other tropical tree species. Genetic divergence, analyzed by Nei's genetic distances, clustered with UPGMA and ordinated by non-metric multidimensional scaling, showed spatial patterns of clusters of local populations. Explicit spatial analyses, using Mantel tests and boundary tests, basically confirmed these patterns and revealed a complex pattern of genetic variation in geographic space. The intercept of the multivariate spatial correlograms was around 120 km, an indication of the minimum distance between samples needed to conserve genetic diversity among samples. This spatial scale can be used to define population genetics units for conservation programs or to establish sampling strategies. This revised version was published online in July 2006 with corrections to the Cover Date.     

Two decades of tropical cyclone impacts on North Carolina’s estuarine carbon,nutrient and phytoplankton dynamics: implications for biogeochemical cycling and water quality in a stormier world

Coastal North Carolina (USA) has experienced 35 tropical cyclones over the past 2 decades; the frequency of these events is expected to continue in the foreseeable future. Individual storms had unique and, at times, significant hydrologic, nutrient-, and carbon (C)-loading impacts on biogeochemical cycling and phytoplankton responses in a large estuarine complex, the Pamlico Sound (PS) and Neuse River Estuary (NRE). Major storms caused up to a doubling of annual nitrogen and tripling of phosphorus loading compared to non-storm years; magnitudes of loading depended on storm tracks, forward speed, and precipitation in NRE-PS watersheds. With regard to C cycling, NRE-PS was a sink for atmospheric CO₂ during dry, storm-free years and a significant source of CO₂ in years with at least one storm, although responses were storm-specific. Hurricane Irene (2011) mobilized large amounts of previously-accumulated terrigenous C in the watershed, mainly as dissolved organic carbon, and extreme winds rapidly released CO₂ to the atmosphere. Historic flooding after Hurricanes Joaquin (2015) and Matthew (2016) provided large inputs of C from the watershed, modifying the annual C balance of NRE-PS and leading to sustained CO₂ efflux for months. Storm type affected biogeochemical responses as C-enriched floodwaters enhanced air–water CO₂ exchange during ‘wet’ storms, while CO₂ fluxes during ‘windy’ storms were largely supported by previously-accumulated C. Nutrient loading and flushing jointly influenced spatio-temporal patterns of phytoplankton biomass and composition. These findings suggest the importance of incorporating freshwater discharge and C dynamics in nutrient management strategies for coastal ecosystems likely to experience a stormier future.