The adequacy of collecting techniques for estimating species richness of grassland invertebrates

1.  There is still considerable debate about the most effective methods of sampling invertebrates in monitoring and assessment programmes.
2.  The above-ground invertebrates of a limestone grassland in north-east England were compared between samples from pitfall traps and from a D-vac suction trap combined with a lightweight swish net (SW/DV).
3.  Over 14 000 individuals were captured, with similar numbers in the pitfall and SW/DV samples. A total of 480 species of Hemiptera, Coleoptera, Diptera and Araneae was identified and placed into 14 taxa for further analysis.
4.  The pitfall sample produced species/specimen curves from which it was possible to estimate species richness for all the Coleoptera and Araneae taxa and the calypterate Schizophora. The SW/DV sample was adequate to estimate the species richness of Hemiptera, most Diptera taxa, herbivorous Coleoptera and Linyphiidae.
5.  The proportion of Coleoptera and Araneae taxa that were method-unique was higher in the pitfall sample than the SW/DV sample and vice versa for the Hemiptera and Diptera taxa. Nevertheless, a relatively high proportion of method-unique species of most taxa was found in both sample types, indicating that they can each contribute to assessing species assemblages in grasslands.
6.  Both pitfall traps and SW/DV samples are needed to estimate species richness in grasslands for all taxa except Heteroptera, Homoptera and Lycosidae. Herbivorous Coleoptera and Linyphiidae were collected in numbers adequate for assessing richness in both sample types, but more specimens were required in one or other sample for the remaining taxa.     

Declines in littoral species richness across both spatial and temporal nutrient gradients: a palaeolimnological study of two taxonomic groups

1. Using a palaeolimnological approach in shallow lakes, we quantified the species richness responses of diatoms and Cladocera to phosphorus enrichment. We also examined differences in species richness responses between littoral and pelagic assemblages of our focal communities. To address both spatial and temporal relationships, our study includes an analysis of both surface sediments from 40 lakes and of a lake sediment record spanning c. 120 years. The objective of our study was to determine whether similar species richness patterns occurred across trophic levels, as well as along spatial and temporal gradients. 2. We found that both diatom and Cladocera species richness estimates significantly declined with increasing phosphorus across space and through time. When the assemblages were subdivided according to known habitat preferences, littoral biodiversity maintained a negative trend, whereas pelagic species richness tended to show no relationship with phosphorus. 3. Negative productivity–diversity patterns have been observed across almost all palaeolimnological studies that span large productivity gradients. This congruence in patterns is most likely due to the similarity in data collection methods and in focal communities studied. The contrasting responses between littoral and pelagic assemblages may be explained by the differences in physical habitat and the pool of taxa in each of these environments. Consistent with the literature, we found statistical support for the idea that littoral diversity declines could be explained by an interaction between macrophytes and nutrients along strong trophic gradients. The general lack of a diversity response in our pelagic assemblages could be attributable to the limited pool of subfossil taxa. The response of the pelagic diatom could also be related to their broad range of nutrient tolerances. 4. The observed negative response of species richness to phosphorus enrichment, particularly in the littoral assemblages, has implications for ecosystems functioning because communities with reduced biodiversity often are less resilient to anthropogenic change.     

Assessing the quality of native vegetation: The 'habitat hectares' approach

Summary Assessments of the 'quality', condition or status of stands of native vegetation or habitat are now commonplace and are often an essential component of ecological studies and planning processes. Even when soundly based upon ecological principles, these assessments are usually highly subjective and involve implicit value judgements. The present paper describes a novel approach to vegetation or habitat quality assessment (habitat hectares approach) that can be used in almost all types of terrestrial vegetation. It is based on explicit comparisons between existing vegetation features and those of 'benchmarks' representing the average characteristics of mature stands of native vegetation of the same community type in a 'natural' or 'undisturbed' condition. Components of the index incorporate vegetation physiognomy and critical aspects of viability (e.g. degree of regeneration, impact of weeds) and spatial considerations (e.g. area, distribution and connectivity of remnant vegetation in the broader landscape). The approach has been developed to assist in making more objective and explicit decisions about where scarce conservation resources are allocated. Although the approach does not require an intimate botanical knowledge, it is believed to be ecologically valid and useful in many contexts. Importantly, the index does not provide a definitive statement on conservation status nor habitat suitability for individual species. It purposefully takes a 'broad-brush' approach and is primarily intended for use by people involved with making environmentally sensitive planning and management decisions, but may be useful within environmental research programmes. The 'habitat hectares' approach is subject to further research and ongoing refinement and constructive feedback is sought from practitioners.     

The importance of physical habitat assessment for evaluating river health

1. Physical habitat is the living space of instream biota; it is a spatially and temporally dynamic entity determined by the interaction of the structural features of the channel and the hydrological regime. 2. This paper reviews the need for physical habitat assessment and the range of physical habitat assessment methods that have been developed in recent years. These methods are needed for assessing improvements made by fishery enhancement and river restoration procedures, and as an intrinsic element of setting environmental flows using instream flow methods. Consequently, the assessment methods must be able to evaluate physical habitat over a range of scales varying from the broad river segment scale (up to hundreds of kilometres) down to the microhabitat level (a few centimetres). 3. Rapid assessment methods involve reconnaissance level surveys (such as the habitat mapping approach) identifying, mapping and measuring key habitat features over long stretches of river in a relatively short space of time. More complex appraisals, such as the Physical Habitat Simulation System (PHABSIM), require more detailed information on microhabitat variations with flow. 4. Key research issues relating to physical habitat evaluation lie in deciding which levels of detail are appropriate for worthwhile yet cost-effective assessment, and in determining those features that are biologically important and hence can be considered habitat features rather than simple geomorphic features. 5. The development of new technologies particularly relating to survey methods should help improve the speed and level of detail attainable by physical habitat assessments. These methods will provide the necessary information required for the development of the two-and three-dimensional physical and hydraulic habitat models. 6. A better understanding of the ways in which the spatial and temporal dynamics of physical habitat determine stream health, and how these elements can be incorporated into assessment methods, remains a key research goal.     

Climate impacts at multiple scales: evidence for differential population responses in juvenile Chinook salmon

1. We explored differential population responses to climate in 18 populations of threatened spring-summer Chinook salmon Onchorynchus tshawytscha in the Salmon River basin, Idaho. 2. Using data from a long-term mark-release-recapture study of juvenile survival, we found that fall stream flow is the best predictor of average survival across all populations. 3. To determine whether all populations responded similarly to climate, we used a cluster analysis to group populations that had similar annual fluctuations in survival. The populations grouped into four clusters, and different environmental factors were important for different clusters. 4. Survival in two of the clusters was negatively correlated with summer temperature, and survival in the other two clusters was positively correlated with minimum fall stream flow, which in turn depends on snow pack from the previous winter. 5. Using classification and regression tree analysis, we identified stream width and stream temperature as key habitat factors that shape the responses of individual populations to climate. 6. Climate change will likely have different impacts on different populations within this metapopulation, and recognizing this diversity is important for accurately assessing risks.     

River condition assessment may depend on the sub-sampling method: field live-sort versus laboratory sub-sampling of invertebrates for bioassessment

Aquatic macroinvertebrates are commonly used biological indicators for assessing the health of freshwater ecosystems. However, counting all the invertebrates in the large samples that are usually collected for rapid site assessment is time-consuming and costly. Therefore, sub-sampling is often done with fixed time or fixed count live-sorting in the field or with preserved material using sample splitters in the laboratory. We investigate the differences between site assessments provided when the two sub-sampling approaches (Live-sort and Lab-sort) were used in conjunction with predictive bioassessment models. The samples showed a method bias. The Live-sort sub-samples tended to have more large, conspicuous invertebrates and often fewer small and, or cryptic animals that were more likely to be found in Lab-sort samples where a microscope was used. The Live-sort method recovered 4–6 more taxa than Lab-sorting in spring, but not in autumn. The magnitude of the significant differences between Live-sort and Lab-sort predictive model outputs, observed to expected (O/E) taxa scores, for the same sites ranged from 0.12 to 0.53. These differences in the methods resulted in different assessments of some sites only and the number of sites that were assessed differently depended on the season, with spring samples showing most disparity. The samples may differ most in spring because many of the invertebrates are larger at that time (and thus are more conspicuous targets for live-sorters). The Live-sort data cannot be run through a predictive model created from Lab-sort data (and vice versa) because of the taxonomic differences in sub-sample composition and the sub-sampling methods must be standardized within and among studies if biological assessment is to provide valid comparisons of site condition. Assessments that rely on the Live-sorting method may indicate that sites are ‘less impaired’ in spring compared to autumn because more taxa are retrieved in spring when they are larger and more visible. Laboratory sub-sampling may return fewer taxa in spring, which may affect assessments relying on taxonomic richness.     

Factors influencing species selection for littoral rainforest restoration: Do environmental gradients matter?

Summary Littoral rainforest in northern New South Wales, Australia, has been severely reduced in area and is now extremely limited in extent. Factors influencing the floristics, species richness and abundance, and relationship of this coastal rainforest community type to other lowland rainforests are explored. The purpose of the study was to provide ecological information to support (i) the development of management recommendations and assist habitat expansion and restoration planning for a coastal site at Lennox Head, in northern New South Wales, and (ii) the implementation of recovery actions for an endangered ecological community and an endangered tree species. Multivariate analysis techniques were used to classify and ordinate sampled sites relative to environmental variables to provide an explanation for current floristic assemblages. Eight locations at varying distances to the coast, and representing a range of soil types, were chosen to test the influence of selected environmental variables. At the broad scale, the results show that proximity to the coast and altitude were generally correlated and represented the most influential variables; soil depth, topographic position and slope were broadly correlated but markedly less influential; disturbance was a significant but independent influence on floristics; and soil type and aspect had the least influence. The study provided insight into the ecological parameters of a range of species suited to the habitat rehabilitation and restoration project, and identified finer‐scale floristic patterns at the Lennox site that appear to reflect the influence of environmental variables. In that case, areas in closer proximity to the ocean are dominated by several littoral rainforest and disturbance‐related species, and species richness increases relative to distance from the ocean. This highlights the need to be sensitive to landscape variation, and the influence of environmental variables on plant species distributions, and population dynamics and structure, to guide final selection of appropriate plant material for littoral rainforest restoration projects.     

The effects of pitfall trap diameter on ant species richness (Hymenoptera: Formicidae) and species composition of the catch in a semi-arid eucalypt woodland

Abstract Ants play an important role in Australian biodiversity and environmental impact assessments, with pitfall-trapping being the principal sampling method. However, the relationship between trap diameter and ant species catch has not been investigated in the context of survey design. Using four different trap diameters, each at a density of one trap per 100 m2, the present study asks three questions: (i) given an equal number of traps, do traps with larger diameters catch more species than smaller-diameter traps?; (ii) do traps with small diameters bias against large or rare species?; (iii) for equal area of the trap mouth, do small but more numerous traps catch more species than fewer but large traps? A total of 84 species were sampled within the 1600 m2 study site, with numbers of species for trap diameters of: 18mm (46 species), 42mm (56 species), 86mm (62 species) and 135mm (64 species). At equal trap density, 18 mm traps caught significantly fewer species than larger traps. Traps of 86 mm and 135mm were no more efficient than 42mm traps. Only 86mm and 135mm traps caught all species > 10mm in length (6 species). For equal area of the trap mouth, small traps were more efficient than large traps. Differences in the catch of the different-sized traps were due primarily to different capture rates of the rare species (40 species): 18mm traps caught 25% of rare species, 42 mm caught 41%, 86 mm caught 44% and 135 mm caught 52%. The role of rare ant species in environmental impact studies is discussed.     

Synoptic assessment of wetland function: a planning tool for protection of wetland species biodiversity

We present a synoptic assessment intended to maximize the benefits to wetland species biodiversity gained through Clean Water Act regulatory efforts within 225 sub-basins in Missouri, Iowa, Nebraska and Kansas (US Environmental Protection Agency, Region 7), USA. Our assessment provides a method for prioritizing sub-basins potentially critical for supporting wetland species biodiversity and may assist environmental managers and conservationists constrained by limited resources. We prioritize sub-basins based on the projected increase in the risk of wetland species extirpation across Region 7 that would be avoided by applying a unit of regulatory protection effort within a sub-basin. Because the projected increase in risk avoided per unit effort has not been directly measured, we represent this quantity with an index of indicators drawn from readily available data. A conceptual model incorporating landscape and anthropogenic factors guides index development via a series of simple benefit-cost equations. We rank and map the final index scores to show the relative priority among sub-basins for protection effort. High priority sub-basins appear to be concentrated along the major river systems within the region, where sensitive wetland species and intensive agriculture tend to coincide. Protection of wetland species biodiversity is an important, but not exclusive, attribute around which priorities should be set. Nevertheless, incorporation of our results into management strategies should allow managers to cast their local decisions in the context of regional scale maintenance of wetland species biodiversity, increasing ecological benefits for a given protection effort.     

The centipede genus Eupolybothrus Verhoeff, 1907 (Chilopoda: Lithobiomorpha: Lithobiidae) in North Africa, a cybertaxonomic revision, with a key to all species in the genus and the first use of DNA barcoding for the group

The centipede genus Eupolybothrus Verhoeff, 1907 in North Africa is revised. A new cavernicolous species, Eupolybothruskahfi Stoev & Akkari, sp. n., is described from a cave in Jebel Zaghouan, northeast Tunisia. Morphologically, it is most closely related to Eupolybothrusnudicornis (Gervais, 1837) from North Africa and Southwest Europe but can be readily distinguished by the long antennae and leg-pair 15, a conical dorso-median protuberance emerging from the posterior part of prefemur 15, and the shape of the male first genital sternite. Molecular sequence data from the cytochrome c oxidase I gene (mtDNA-5' COI-barcoding fragment) exhibit 19.19% divergence between Eupolybothruskahfi and Eupolybothrusnudicornis, an interspecific value comparable to those observed among four other species of Eupolybothrus which, combined with a low intraspecific divergence (0.3-1.14%), supports the morphological diagnosis of Eupolybothruskahfi as a separate species. This is the first troglomorphic myriapod to be found in Tunisia, and the second troglomorph lithobiomorph centipede known from North Africa. Eupolybothrusnudicornis is redescribed based on abundant material from Tunisia and its post-embryonic development, distribution and habitat preferences recorded. Eupolybothruscloudsley-thompsoni Turk, 1955, a nominal species based on Tunisian type material, is placed in synonymy with Eupolybothrusnudicornis. To comply with the latest technological developments in publishing of biological information, the paper implements new approaches in cybertaxonomy, such as fine granularity XML tagging validated against the NLM DTD TaxPub for PubMedCentral and dissemination in XML to various aggregators (GBIF, EOL, Wikipedia), vizualisation of all taxa mentioned in the text via the dynamically created Pensoft Taxon Profile (PTP) page, data publishing, georeferencing of all localities via Google Earth, and ZooBank, GenBank and MorphBank registration of datasets. An interactive key to all valid species of Eupolybothrus is made with DELTA software.